AT2G41550

Rho termination factor, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009279
Physical Location & Seq
Reverse (-)
17328886 .. 17331173
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41550.1

Sequence Viewer

Length: 1428 bp
ATGGATGATGATGATGATCTCTGGGGTCCGCCACGAGTTTTTGTAGTTGTGCAAGACGATACCTTTCGTAAACAGACCGTACGTCGTTGTGAATTTTGGTTCGATTTCAGAACAGATGTGCTCGAAGAAAATTTCCAGAACGAAAAGTATTGTGAGCTAGTTTGGAGGATATTGACAGAGAAGAAGAGGCAAGTTACTGAAATTGCTGAGCTTGAGAGGGTTTCAGTTTCAGTATCGGCTCAAAATGATACGGCTTCCTCTGGGAGTGGTGGTGACTTGCATGAGATAGACTCTTCTGATTCTGATAAGACTCTCAGTACTACTCTTCCAGATTCTGATACTAGTTCTGCTAAACTGGCTCTTGATGACGACGAAAACACTTCTAGTATCAGCGATGCTCAGACTGCTCAAACTGTTCAGATCAGAGATTCTAGTAACGACGACACTGAAGATATAGAGCCTGAAACAAGATTGATGCCTCATGAGACAGCAGCTAATGATCCACTAACAGTTGAGGTTGCAGAAGATGCAGATACCTCTTCTAGCCCTGTGTTGGAAAGCAAGATTGACGAAGCTGAAGAACATTCTTGTTCATCCTTGGTTACTGACCAAGTCTTTGATCCTATAAAGCAAGCCCTCGAGAACAAATCTTCATCTGCTATAAGCCGTGAGAGTATTGGAGGTTCCACACTGAGACCATTGCATTTAGAGACCCGGGAGAAGGCAAATACTACAGACGAAGATGGAGATATATTGAAGGATCACCAGCAAAACGATAGCTTGCAAGACATTGTAACTGTTTCGGAACCTTTTACCACAGAGTCTCTCTTAGAAATGTGTGATGAACCGGACAAAGGCAGAGATATCCCATGTGGTGAGAGAAGCAAAAAATCACATCCTGAAGCTGTGGTGAAGACTGTAGTTAAAGACGAGCTGATCATAAGCTTGCTTACCGAGGCAAGAAAAAAGGCAGAGAGCAAGAATCCTGGGTCAGTCCTTATAAAGAAGAGACAGAGACAGTCTAATAGCAGTGACAATAAAGGCGCGAACACAAGTTTTATCAGAAACATCAAGCAGAAAGTACAAGGTGGAGCTGGTGAGATTAATATTGATCCAGTTAAAAACTCAACCCAGTCGACACCAAAGATCATCAGGGGTTCGAGTGTTCCCACACAGCATGCAGATTCGTTGTTGGATTCTTCCATGGACGGAAAAATCCAGAGAGGTGGAAAAAATGTAAGTGGCTCATTGATATCATTATCCATAAGTGAGTTGAAGAAGAAGACAGGCAAGGAATTAAGAAGCATAGCGAAGGATCTGAAAGTACAACATTACTATAAGCTCAAGAAAGAAGATCTGCTTCAACGGATAACCAATCAACTAAACCCCCAGTTAGCCGATTGTACAAAGCAGAGAATGGAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rho_N

Protein Analysis

475

Amino Acids

52.7

Weight (kDa)

4.83

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_N PF07498 424 - 458 4.8e-07 Rho termination factor, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1001
AccI GTMKAC 1 cut(s) 1136
AccII CGCG 1 cut(s) 1046
AciI CCGC 1 cut(s) 29
AclWI GGATC 5 cut(s) 494, 614, 768, 1106, 1323
AcsI RAATTY 2 cut(s) 92, 130
AcuI CTGAAG 3 cut(s) 468, 597, 921
AfaI GTAC 5 cut(s) 81, 319, 1083, 1326, 1405
AfiI CCNNNNNNNGG 3 cut(s) 553, 721, 854
AgsI TTSAA 3 cut(s) 757, 1276, 1364
AhdI GACNNNNNGTC 1 cut(s) 81
AhlI ACTAGT 1 cut(s) 341
AjnI CCWGG 1 cut(s) 985
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 6 cut(s) 479, 688, 704, 828, 1003, 1009
AlwI GGATC 5 cut(s) 494, 614, 768, 1106, 1323
AlwNI CAGNNNCTG 1 cut(s) 335
Ama87I CYCGRG 2 cut(s) 638, 714
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 2 cut(s) 92, 130
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AseI ATTAAT 1 cut(s) 1104
AspLEI GCGC 1 cut(s) 1046
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 2 cut(s) 715, 716
AsuHPI GGTGA 5 cut(s) 284, 755, 887, 922, 1109
AvaI CYCGRG 2 cut(s) 638, 714
AvaII GGWCC 1 cut(s) 26
BauI CACGAG 1 cut(s) 33
BbsI GAAGAC 2 cut(s) 920, 1289
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 503
BccI CCATC 1 cut(s) 737
BceAI ACGGC 2 cut(s) 267, 651
BciT130I CCWGG 1 cut(s) 987
BclI TGATCA 1 cut(s) 936
BcnI CCSGG 2 cut(s) 715, 716
BcoDI GTCTC 6 cut(s) 479, 688, 704, 828, 1003, 1009
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 5 cut(s) 158, 342, 384, 432, 543
BfmI CTRYAG 2 cut(s) 732, 918
BglII AGATCT 1 cut(s) 1354
BisI GCNGC 1 cut(s) 492
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 493
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 3 cut(s) 715, 716, 987
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 81
BmeT110I CYCGRG 2 cut(s) 638, 714
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 3 cut(s) 27, 685, 807
BmrFI CCNGG 3 cut(s) 715, 716, 987
BmrI ACTGGG 2 cut(s) 1126, 1384
BmsI GCATC 3 cut(s) 385, 465, 517
BmuI ACTGGG 2 cut(s) 1126, 1384
BpiI GAAGAC 2 cut(s) 920, 1289
BplI GAGNNNNNCTC 2 cut(s) 275, 307
Bpu1102I GCTNAGC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 233, 1328
BpuMI CCSGG 2 cut(s) 715, 716
BsaBI GATNNNNATC 1 cut(s) 15
BsaI GGTCTC 2 cut(s) 688, 704
BsaJI CCNNGG 5 cut(s) 597, 714, 954, 986, 1203
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 3 cut(s) 553, 721, 854
Bse1I ACTGG 4 cut(s) 360, 1115, 1132, 1390
Bse3DI GCAATG 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 987
BseDI CCNNGG 5 cut(s) 597, 714, 954, 986, 1203
BseGI GGATG 3 cut(s) 10, 593, 895
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 3 cut(s) 553, 721, 854
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 4 cut(s) 198, 328, 413, 683
BseNI ACTGG 4 cut(s) 360, 1115, 1132, 1390
BseXI GCAGC 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 1046
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 2 cut(s) 638, 714
BsiSI CCGG 2 cut(s) 715, 848
BsiWI CGTACG 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 553, 721, 854
BsmAI GTCTC 6 cut(s) 479, 688, 704, 828, 1003, 1009
Bso31I GGTCTC 2 cut(s) 688, 704
BsoBI CYCGRG 2 cut(s) 638, 714
Bsp1286I GDGCHC 1 cut(s) 123
Bsp1407I TGTACA 1 cut(s) 1403
Bsp1720I GCTNAGC 1 cut(s) 207
Bsp19I CCATGG 1 cut(s) 1203
BspACI CCGC 1 cut(s) 29
BspCNI CTCAG 4 cut(s) 199, 327, 412, 684
BspFNI CGCG 1 cut(s) 1046
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 3 cut(s) 27, 685, 807
BspPI GGATC 5 cut(s) 494, 614, 768, 1106, 1323
BspTNI GGTCTC 2 cut(s) 688, 704
BsrDI GCAATG 1 cut(s) 698
BsrGI TGTACA 1 cut(s) 1403
BsrI ACTGG 4 cut(s) 360, 1115, 1132, 1390
BssECI CCNNGG 5 cut(s) 597, 714, 954, 986, 1203
BssSI CACGAG 1 cut(s) 33
BssT1I CCWWGG 2 cut(s) 597, 1203
Bst2BI CACGAG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 987
Bst4CI ACNGT 6 cut(s) 79, 415, 511, 799, 919, 1020
Bst6I CTCTTC 5 cut(s) 179, 298, 330, 544, 1001
BstAPI GCANNNNNTGC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 1403
BstC8I GCNNGC 4 cut(s) 633, 782, 947, 1179
BstDEI CTNAG 5 cut(s) 207, 314, 399, 692, 829
BstDSI CCRYGG 1 cut(s) 1203
BstF5I GGATG 3 cut(s) 10, 593, 895
BstFNI CGCG 1 cut(s) 1046
BstHHI GCGC 1 cut(s) 1046
BstMAI GTCTC 6 cut(s) 479, 688, 704, 828, 1003, 1009
BstMWI GCNNNNNNNGC 3 cut(s) 356, 404, 527
BstNI CCWGG 1 cut(s) 987
BstNSI RCATGY 1 cut(s) 1181
BstSCI CCNGG 3 cut(s) 713, 714, 985
BstSFI CTRYAG 2 cut(s) 732, 918
BstUI CGCG 1 cut(s) 1046
BstV1I GCAGC 1 cut(s) 503
BstV2I GAAGAC 2 cut(s) 920, 1289
BstX2I RGATCY 2 cut(s) 1315, 1354
BstXI CCANNNNNNTGG 1 cut(s) 1226
BstYI RGATCY 2 cut(s) 1315, 1354
BtgI CCRYGG 1 cut(s) 1203
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 3 cut(s) 10, 593, 895
BtsI GCAGTG 1 cut(s) 1036
BtsIMutI CAGTG 3 cut(s) 444, 689, 1036
Cac8I GCNNGC 4 cut(s) 633, 782, 947, 1179
CaiI CAGNNNCTG 1 cut(s) 335
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 1046
Cfr13I GGNCC 1 cut(s) 26
Cfr9I CCCGGG 1 cut(s) 714
Csp6I GTAC 5 cut(s) 80, 318, 1082, 1325, 1404
CviAII CATG 5 cut(s) 281, 482, 870, 1178, 1204
CviQI GTAC 5 cut(s) 80, 318, 1082, 1325, 1404
DdeI CTNAG 5 cut(s) 207, 314, 399, 692, 829
DriI GACNNNNNGTC 1 cut(s) 81
Eam1104I CTCTTC 5 cut(s) 179, 298, 330, 544, 1001
Eam1105I GACNNNNNGTC 1 cut(s) 81
EarI CTCTTC 5 cut(s) 179, 298, 330, 544, 1001
EciI GGCGGA 1 cut(s) 18
Eco130I CCWWGG 2 cut(s) 597, 1203
Eco31I GGTCTC 2 cut(s) 688, 704
Eco32I GATATC 2 cut(s) 865, 1254
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 3 cut(s) 468, 597, 921
Eco88I CYCGRG 2 cut(s) 638, 714
EcoRII CCWGG 1 cut(s) 985
EcoRV GATATC 2 cut(s) 865, 1254
EcoT14I CCWWGG 2 cut(s) 597, 1203
ErhI CCWWGG 2 cut(s) 597, 1203
FaeI CATG 5 cut(s) 284, 485, 873, 1181, 1207
FalI AAGNNNNNCTT 2 cut(s) 1344, 1376
FatI CATG 5 cut(s) 280, 481, 869, 1177, 1203
FbaI TGATCA 1 cut(s) 936
FblI GTMKAC 1 cut(s) 1136
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 3 cut(s) 17, 580, 882
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 5 cut(s) 158, 342, 384, 432, 543
GlaI GCGC 1 cut(s) 1045
GluI GCNGC 1 cut(s) 492
HapII CCGG 2 cut(s) 715, 848
HhaI GCGC 1 cut(s) 1046
Hin1II CATG 5 cut(s) 284, 485, 873, 1181, 1207
Hin6I GCGC 1 cut(s) 1044
HinP1I GCGC 1 cut(s) 1044
HincII GTYRAC 1 cut(s) 1137
HindII GTYRAC 1 cut(s) 1137
HindIII AAGCTT 1 cut(s) 943
HpaII CCGG 2 cut(s) 715, 848
HphI GGTGA 5 cut(s) 284, 755, 887, 922, 1109
Hpy166II GTNNAC 2 cut(s) 71, 1137
Hpy188III TCNNGA 8 cut(s) 136, 329, 362, 482, 640, 899, 1219, 1345
Hpy8I GTNNAC 2 cut(s) 71, 1137
Hpy99I CGWCG 3 cut(s) 87, 374, 443
HpyAV CCTTC 3 cut(s) 715, 751, 1306
HpyCH4III ACNGT 6 cut(s) 79, 415, 511, 799, 919, 1020
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 7 cut(s) 52, 280, 521, 530, 703, 784, 1181
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 404, 527
HpyF3I CTNAG 5 cut(s) 207, 314, 399, 692, 829
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 5 cut(s) 284, 485, 873, 1181, 1207
HspAI GCGC 1 cut(s) 1044
Ksp22I TGATCA 1 cut(s) 936
LmnI GCTCC 1 cut(s) 1091
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 3 cut(s) 385, 465, 517
MaeI CTAG 5 cut(s) 158, 342, 384, 432, 543
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 6 cut(s) 193, 272, 434, 601, 793, 1031
MflI RGATCY 2 cut(s) 1315, 1354
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 4 cut(s) 92, 130, 201, 1295
MlyI GAGTC 3 cut(s) 284, 304, 830
MmeI TCCRAC 2 cut(s) 534, 1173
MseI TTAA 4 cut(s) 924, 1104, 1119, 1298
MspI CCGG 2 cut(s) 715, 848
MspR9I CCNGG 3 cut(s) 715, 716, 987
MvaI CCWGG 1 cut(s) 987
MvnI CGCG 1 cut(s) 1046
MwoI GCNNNNNNNGC 3 cut(s) 356, 404, 527
NciI CCSGG 2 cut(s) 715, 716
NcoI CCATGG 1 cut(s) 1203
NlaIII CATG 5 cut(s) 284, 485, 873, 1181, 1207
NlaIV GGNNCC 3 cut(s) 27, 685, 807
NmuCI GTSAC 2 cut(s) 272, 1031
NspI RCATGY 1 cut(s) 1181
PaeI GCATGC 1 cut(s) 1181
PaeR7I CTCGAG 1 cut(s) 638
PagI TCATGA 1 cut(s) 481
PfeI GAWTC 6 cut(s) 299, 332, 428, 982, 1184, 1196
Pfl23II CGTACG 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 611
PkrI GCNGC 1 cut(s) 493
PleI GAGTC 3 cut(s) 284, 304, 829
PpsI GAGTC 3 cut(s) 284, 304, 829
PshBI ATTAAT 1 cut(s) 1104
PsiI TTATAA 1 cut(s) 1001
Psp6I CCWGG 1 cut(s) 985
PspGI CCWGG 1 cut(s) 985
PspLI CGTACG 1 cut(s) 79
PspN4I GGNNCC 3 cut(s) 27, 685, 807
PspPI GGNCC 1 cut(s) 26
PsrI GAACNNNNNNTAC 2 cut(s) 667, 699
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 2 cut(s) 1315, 1354
PsyI GACNNNGTC 1 cut(s) 611
RsaI GTAC 5 cut(s) 81, 319, 1083, 1326, 1405
RsaNI GTAC 5 cut(s) 80, 318, 1082, 1325, 1404
SalI GTCGAC 1 cut(s) 1135
SaqAI TTAA 4 cut(s) 924, 1104, 1119, 1298
SatI GCNGC 1 cut(s) 492
Sau96I GGNCC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 319
SchI GAGTC 3 cut(s) 284, 304, 830
ScrFI CCNGG 3 cut(s) 715, 716, 987
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 3 cut(s) 385, 465, 517
SfcI CTRYAG 2 cut(s) 732, 918
Sfr274I CTCGAG 1 cut(s) 638
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 638
SmaI CCCGGG 1 cut(s) 716
SmlI CTYRAG 3 cut(s) 212, 638, 1343
SmoI CTYRAG 3 cut(s) 212, 638, 1343
SpeI ACTAGT 1 cut(s) 341
SphI GCATGC 1 cut(s) 1181
Sse9I AATT 4 cut(s) 92, 130, 201, 1295
SsiI CCGC 1 cut(s) 29
SspI AATATT 1 cut(s) 1108
SspMI CTAG 5 cut(s) 158, 342, 384, 432, 543
StyD4I CCNGG 3 cut(s) 713, 714, 985
StyI CCWWGG 2 cut(s) 597, 1203
TaaI ACNGT 6 cut(s) 79, 415, 511, 799, 919, 1020
TaiI ACGT 1 cut(s) 85
TaqI TCGA 5 cut(s) 102, 123, 639, 1136, 1160
TasI AATT 4 cut(s) 92, 130, 201, 1295
TatI WGTACW 4 cut(s) 317, 1081, 1324, 1403
TfiI GAWTC 6 cut(s) 299, 332, 428, 982, 1184, 1196
Tru1I TTAA 4 cut(s) 924, 1104, 1119, 1298
Tru9I TTAA 4 cut(s) 924, 1104, 1119, 1298
TscAI CASTG 3 cut(s) 451, 696, 1036
TseFI GTSAC 2 cut(s) 272, 1031
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 2 cut(s) 272, 1031
TspDTI ATGAA 3 cut(s) 582, 642, 858
TspGWI ACGGA 2 cut(s) 1224, 1381
TspMI CCCGGG 1 cut(s) 714
TspRI CASTG 3 cut(s) 451, 696, 1036
Tth111I GACNNNGTC 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 1104
XapI RAATTY 2 cut(s) 92, 130
XceI RCATGY 1 cut(s) 1181
XhoI CTCGAG 1 cut(s) 638
XmaI CCCGGG 1 cut(s) 714
XmiI GTMKAC 1 cut(s) 1136
XspI CTAG 5 cut(s) 158, 342, 384, 432, 543
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.