FvH4_6g24470

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
18571748 .. 18576815
5068 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24470.t3

Sequence Viewer

Length: 1968 bp
ATGGCTTGGGATCTGTGGGGTCCATCACATCCTCAAGTTGAACTTGAGACTACTTACTTCCCGCAATCGGAATGGCATTGTGACTTTTACTTTGGCTATGGACATGATATCATAGAAGAAAATGCGCTAAACGAGAAATTTTGTTTAGAAGTAGTGAAGAGATTGCTGGCAAAGGCCGATACAGAAATTGATGATTTCAAAAAGGATTTGGTGTCTCTTCAAAGTGAACTAGCGTGGGCTAAACATGAGGAATGGAATGACATATGTTTTGGTGCTTTGAGTGACAATTTTGCTTTCGGTGACAGTTCTATCAAGAATTCGAGAAATAAAGATGAGAACAATATCGAGGTTCAATCACTAGTGCATACAGAACCTGCAGAGAGTACAGATGAGAAAGATGAGCAGTGTATGACTACAAAACATTCAACTAATGTCAGCTCCATTGATGAGAAGACACGCCTAGAAAGTTTTGATTCAAAATTGATTAATGAGGTGGTAGAGCACTCTTTCATACCCGCAGCATATATAGGTACTTCACTGACGCCTGATGAACGCAGATCAAATGCCAGTAAAATGGTTGAGCCTGCAGATGTTATGGCCAAAAGTTCTCTTATCTATGGAAATGGCTGTTCCAGTGAGGTGAAAAATTCATGCATGCCTATTTTGACAGAAAATGGATGTGATGAAATAAGGAAAAAGCCTTCTACTAGAAGTCAAACCTTGATGTCATCTTTAACTTCTGAAATCAAGGCAACCCTTCAACAAACCAATAAGCCTGCATGTCCCCTTGTTAAGTATGGTGGTCAAGACGCTTTGAGACAATCAGCTGGCATCAAGAAGAGTAATGGATGTCCGGAATCCAGCTTGTGCGCTTCAAGTCCGACAGAATGTAATGTAGAGCAAAAGCTGATTGACTTTGTTCTGCAAACTGCACGAAAAGTGGGCATCAGAAAATCAAAGATGACTATGGGTAACAAGATTGGCTGTCCAAATGAGTCTTTAAGTACCACTAAAAATGGAAGAAATCAACGAAAAACAGTCAAGTTTCAAGGCAGGAGCACTGATAAGGAAGGTTCTGATCAGTTCACAATAGCAAAAGAAACTCAAAGCCTAAAGCGAAAGAGGAAATCACCATTGAGTGCACAGAATGTCCAAGAAACATGTTTTCCTTCTACAGAGATCAGTTCAAATACAAAGGTTATTTCAAAAGCTGAGAAGGAACAAAAATCCAAAATAACTGATGACAATACTAGGTTGAATCTGATTTCGAAGAAGTGTGAAAAATTAGGTCATATTGAACATTGTGAAGACAAAGATCATGGCACCTCTCATGGTAATAGTAAAACTTCAGCTTCACAGTTGCAAAAGAAGAGGAAAAGGACTCCAAGTTCCCCACTTACTGCAGACACTAGAGAAAGGACTGCATGTTTAGGCTCAAAAGACTTGAACAGTTATTTGCGAAAGAAGAGGAAAGTGACTTCAGTTTTCACATGTACTGCCGAGGTAAAAGATTTGTCTTTAAGTTTGCCATTGCAAGATTTACACAGAGACGCTACTAATGGTTCTTTTGAGGAAGATCTTAAGCATCCAGAGAGGGAAGATTCAGAAATTGTAGAGGCTTCAAAGTCACAAAAGCAGAGAAATATGACTTCAACTTTCACAATTCCTGCAGAAATTAAAGATCTGTCTTTAGGTGTGGGCATGCAAAATTTACACAAGGATAGGGACGCAACTAATGGTAAGGTTGAGGAAGATCCTCTGATCGTCAAGTCCTATTCTGGAGATGATTCTCACACTAGGAATTTGGTTCCATATGCAATTCCAACTCCTATTCCAAGTCAGAGGTTGATGGAAATGACTGTAGGTAAACTGAAAGAATTGGCAAAGAGACTTGAACTGAAAAACATTCACAAGCTACGGAAAATGGAGCTGGTTGACCTACTAGCCAAGACACAGGGAGGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

656

Amino Acids

73.28

Weight (kDa)

7.78

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AccB1I GGYRCC 1 cut(s) 1322
AccIII TCCGGA 1 cut(s) 853
AciI CCGC 2 cut(s) 62, 516
AclWI GGATC 2 cut(s) 18, 1748
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 5 cut(s) 137, 316, 646, 1708, 1801
AcuI CTGAAG 2 cut(s) 1332, 1464
AcyI GRCGYC 1 cut(s) 542
AfaI GTAC 4 cut(s) 385, 532, 1006, 1495
AfiI CCNNNNNNNGG 1 cut(s) 67
AflII CTTAAG 1 cut(s) 1580
AflIII ACRYGT 2 cut(s) 1160, 1490
AhlI ACTAGT 1 cut(s) 358
AloI GAACNNNNNNTCC 2 cut(s) 1372, 1404
AluBI AGCT 8 cut(s) 438, 827, 864, 907, 1211, 1352, 1915, 1930
AluI AGCT 8 cut(s) 438, 827, 864, 907, 1211, 1352, 1915, 1930
Alw21I GWGCWC 3 cut(s) 504, 1061, 1144
Alw26I GTCTC 5 cut(s) 41, 219, 811, 1542, 1882
Alw44I GTGCAC 1 cut(s) 1140
AlwI GGATC 2 cut(s) 18, 1748
AlwNI CAGNNNCTG 1 cut(s) 374
Aor13HI TCCGGA 1 cut(s) 853
AoxI GGCC 2 cut(s) 174, 597
ApaLI GTGCAC 1 cut(s) 1140
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 5 cut(s) 137, 316, 646, 1708, 1801
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 251, 283
AseI ATTAAT 1 cut(s) 486
AspLEI GCGC 2 cut(s) 127, 872
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 3 cut(s) 311, 652, 1122
AsuII TTCGAA 1 cut(s) 1268
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 1144
BalI TGGCCA 1 cut(s) 599
BanI GGYRCC 1 cut(s) 1322
BbsI GAAGAC 2 cut(s) 458, 1314
Bbv12I GWGCWC 3 cut(s) 504, 1061, 1144
BbvI GCAGC 1 cut(s) 530
BccI CCATC 2 cut(s) 31, 1843
BclI TGATCA 1 cut(s) 1078
BcoDI GTCTC 5 cut(s) 41, 219, 811, 1542, 1882
BcuI ACTAGT 1 cut(s) 358
BfaI CTAG 8 cut(s) 230, 359, 461, 708, 1251, 1410, 1797, 1943
BfmI CTRYAG 6 cut(s) 375, 585, 1173, 1401, 1668, 1860
BfrI CTTAAG 1 cut(s) 1580
BfuAI ACCTGC 1 cut(s) 382
BglII AGATCT 2 cut(s) 1576, 1681
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 3 cut(s) 21, 1324, 1809
BmsI GCATC 3 cut(s) 840, 954, 1594
BpiI GAAGAC 2 cut(s) 458, 1314
BpmI CTGGAG 1 cut(s) 1800
Bpu14I TTCGAA 1 cut(s) 1268
BpuEI CTTGAG 2 cut(s) 18, 65
BsaHI GRCGYC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 1500
BsaWI WCCGGW 1 cut(s) 853
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 567, 633
Bse3DI GCAATG 1 cut(s) 1529
BseAI TCCGGA 1 cut(s) 853
BseDI CCNNGG 1 cut(s) 1500
BseGI GGATG 4 cut(s) 28, 683, 854, 1585
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 1529
BseMII CTCAG 1 cut(s) 1203
BseNI ACTGG 2 cut(s) 567, 633
BseSI GKGCMC 1 cut(s) 1144
BseXI GCAGC 1 cut(s) 530
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 2 cut(s) 176, 599
BshNI GGYRCC 1 cut(s) 1322
BsiHKAI GWGCWC 3 cut(s) 504, 1061, 1144
BsiSI CCGG 1 cut(s) 854
BslFI GGGAC 2 cut(s) 768, 1739
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 5 cut(s) 41, 219, 811, 1542, 1882
BsmBI CGTCTC 1 cut(s) 1542
BsmFI GGGAC 2 cut(s) 768, 1739
BsnI GGCC 2 cut(s) 176, 599
Bsp119I TTCGAA 1 cut(s) 1268
Bsp1286I GDGCHC 3 cut(s) 504, 1061, 1144
Bsp13I TCCGGA 1 cut(s) 853
Bsp143I GATC 9 cut(s) 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761
BspACI CCGC 2 cut(s) 62, 516
BspANI GGCC 2 cut(s) 176, 599
BspCNI CTCAG 1 cut(s) 1204
BspEI TCCGGA 1 cut(s) 853
BspLI GGNNCC 3 cut(s) 21, 1324, 1809
BspMAI CTGCAG 4 cut(s) 379, 589, 1405, 1672
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 2 cut(s) 18, 1748
BspT104I TTCGAA 1 cut(s) 1268
BspT107I GGYRCC 1 cut(s) 1322
BspTI CTTAAG 1 cut(s) 1580
BsrDI GCAATG 1 cut(s) 1529
BsrI ACTGG 2 cut(s) 567, 633
BssECI CCNNGG 1 cut(s) 1500
BssMI GATC 9 cut(s) 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761
BssNI GRCGYC 1 cut(s) 542
Bst4CI ACNGT 5 cut(s) 305, 1039, 1359, 1451, 1861
Bst6I CTCTTC 5 cut(s) 152, 222, 833, 1364, 1460
BstACI GRCGYC 1 cut(s) 542
BstAFI CTTAAG 1 cut(s) 1580
BstBI TTCGAA 1 cut(s) 1268
BstC8I GCNNGC 6 cut(s) 168, 585, 656, 777, 829, 1703
BstDEI CTNAG 1 cut(s) 1212
BstF5I GGATG 4 cut(s) 28, 683, 854, 1585
BstHHI GCGC 2 cut(s) 127, 872
BstKTI GATC 9 cut(s) 13, 560, 1081, 1182, 1318, 1579, 1684, 1756, 1764
BstMAI GTCTC 5 cut(s) 41, 219, 811, 1542, 1882
BstMBI GATC 9 cut(s) 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761
BstNSI RCATGY 6 cut(s) 658, 783, 1164, 1428, 1494, 1705
BstSFI CTRYAG 6 cut(s) 375, 585, 1173, 1401, 1668, 1860
BstSLI GKGCMC 1 cut(s) 1144
BstV1I GCAGC 1 cut(s) 530
BstV2I GAAGAC 2 cut(s) 458, 1314
BstX2I RGATCY 4 cut(s) 10, 1576, 1681, 1753
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 4 cut(s) 10, 1576, 1681, 1753
BsuRI GGCC 2 cut(s) 176, 599
BtsCI GGATG 4 cut(s) 28, 683, 854, 1585
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 4 cut(s) 410, 536, 640, 1059
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 6 cut(s) 168, 585, 656, 777, 829, 1703
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 2 cut(s) 127, 872
Cfr13I GGNCC 1 cut(s) 20
CseI GACGC 4 cut(s) 550, 818, 1559, 1736
Csp6I GTAC 4 cut(s) 384, 531, 1005, 1494
CviQI GTAC 4 cut(s) 384, 531, 1005, 1494
DdeI CTNAG 1 cut(s) 1212
DpnI GATC 9 cut(s) 12, 559, 1080, 1181, 1317, 1578, 1683, 1755, 1763
DpnII GATC 9 cut(s) 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 5 cut(s) 152, 222, 833, 1364, 1460
EarI CTCTTC 5 cut(s) 152, 222, 833, 1364, 1460
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 1332, 1464
EcoRI GAATTC 1 cut(s) 316
EcoRV GATATC 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 656
Esp3I CGTCTC 1 cut(s) 1542
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 2 cut(s) 768, 1739
FauI CCCGC 2 cut(s) 69, 523
FauNDI CATATG 2 cut(s) 263, 1813
FbaI TGATCA 1 cut(s) 1078
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 4 cut(s) 15, 690, 861, 1572
Fsp4HI GCNGC 1 cut(s) 519
FspBI CTAG 8 cut(s) 230, 359, 461, 708, 1251, 1410, 1797, 1943
GlaI GCGC 2 cut(s) 126, 871
GluI GCNGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 1800
HaeIII GGCC 2 cut(s) 176, 599
HapII CCGG 1 cut(s) 854
HgaI GACGC 4 cut(s) 550, 818, 1559, 1736
HhaI GCGC 2 cut(s) 127, 872
Hin1I GRCGYC 1 cut(s) 542
Hin6I GCGC 2 cut(s) 125, 870
HinP1I GCGC 2 cut(s) 125, 870
HincII GTYRAC 1 cut(s) 1936
HindII GTYRAC 1 cut(s) 1936
HinfI GANTC 7 cut(s) 473, 857, 995, 1258, 1381, 1601, 1787
HpaII CCGG 1 cut(s) 854
HphI GGTGA 3 cut(s) 311, 652, 1122
Hpy166II GTNNAC 5 cut(s) 227, 1086, 1142, 1868, 1936
Hpy188I TCNGA 9 cut(s) 70, 742, 882, 950, 1078, 1263, 1606, 1761, 1842
Hpy188III TCNNGA 7 cut(s) 313, 321, 806, 835, 854, 1589, 1779
Hpy8I GTNNAC 5 cut(s) 227, 1086, 1142, 1868, 1936
HpyAV CCTTC 5 cut(s) 711, 767, 1064, 1179, 1210
HpyCH4III ACNGT 5 cut(s) 305, 1039, 1359, 1451, 1861
HpyF3I CTNAG 1 cut(s) 1212
Hsp92I GRCGYC 1 cut(s) 542
HspAI GCGC 2 cut(s) 125, 870
Kpn2I TCCGGA 1 cut(s) 853
Ksp22I TGATCA 1 cut(s) 1078
Kzo9I GATC 9 cut(s) 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761
LmnI GCTCC 3 cut(s) 443, 1056, 1927
Lsp1109I GCAGC 1 cut(s) 530
LweI GCATC 3 cut(s) 840, 954, 1594
MaeI CTAG 8 cut(s) 230, 359, 461, 708, 1251, 1410, 1797, 1943
MaeIII GTNAC 7 cut(s) 80, 281, 299, 971, 1474, 1626, 1961
MalI GATC 9 cut(s) 12, 559, 1080, 1181, 1317, 1578, 1683, 1755, 1763
MboI GATC 9 cut(s) 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761
MflI RGATCY 4 cut(s) 10, 1576, 1681, 1753
MhlI GDGCHC 3 cut(s) 504, 1061, 1144
MlsI TGGCCA 1 cut(s) 599
MluNI TGGCCA 1 cut(s) 599
MlyI GAGTC 2 cut(s) 1004, 1375
MmeI TCCRAC 2 cut(s) 905, 1847
Mox20I TGGCCA 1 cut(s) 599
Mph1103I ATGCAT 1 cut(s) 656
MroI TCCGGA 1 cut(s) 853
MscI TGGCCA 1 cut(s) 599
MseI TTAA 7 cut(s) 486, 734, 792, 1001, 1520, 1581, 1677
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 827
MspCI CTTAAG 1 cut(s) 1580
MspI CCGG 1 cut(s) 854
NdeI CATATG 2 cut(s) 263, 1813
NdeII GATC 9 cut(s) 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761
NlaIV GGNNCC 3 cut(s) 21, 1324, 1809
NmeAIII GCCGAG 1 cut(s) 1525
NmuCI GTSAC 6 cut(s) 80, 281, 299, 1474, 1626, 1961
NsiI ATGCAT 1 cut(s) 656
NspI RCATGY 6 cut(s) 658, 783, 1164, 1428, 1494, 1705
NspV TTCGAA 1 cut(s) 1268
PaeI GCATGC 2 cut(s) 658, 1705
PciI ACATGT 2 cut(s) 1160, 1490
PfeI GAWTC 5 cut(s) 473, 857, 1258, 1601, 1787
PkrI GCNGC 1 cut(s) 520
PleI GAGTC 2 cut(s) 1003, 1375
PpsI GAGTC 2 cut(s) 1003, 1375
PscI ACATGT 2 cut(s) 1160, 1490
PshBI ATTAAT 1 cut(s) 486
PspN4I GGNNCC 3 cut(s) 21, 1324, 1809
PspPI GGNCC 1 cut(s) 20
PstI CTGCAG 4 cut(s) 379, 589, 1405, 1672
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 4 cut(s) 10, 1576, 1681, 1753
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 4 cut(s) 385, 532, 1006, 1495
RsaNI GTAC 4 cut(s) 384, 531, 1005, 1494
SaqAI TTAA 7 cut(s) 486, 734, 792, 1001, 1520, 1581, 1677
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 9 cut(s) 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 2 cut(s) 1004, 1375
SduI GDGCHC 3 cut(s) 504, 1061, 1144
SfaNI GCATC 3 cut(s) 840, 954, 1594
SfcI CTRYAG 6 cut(s) 375, 585, 1173, 1401, 1668, 1860
SfuI TTCGAA 1 cut(s) 1268
SinI GGWCC 1 cut(s) 20
SmlI CTYRAG 3 cut(s) 33, 44, 1580
SmoI CTYRAG 3 cut(s) 33, 44, 1580
SpeI ACTAGT 1 cut(s) 358
SphI GCATGC 2 cut(s) 658, 1705
SsiI CCGC 2 cut(s) 62, 516
SspMI CTAG 8 cut(s) 230, 359, 461, 708, 1251, 1410, 1797, 1943
TaaI ACNGT 5 cut(s) 305, 1039, 1359, 1451, 1861
TaqI TCGA 3 cut(s) 320, 345, 1268
TatI WGTACW 2 cut(s) 383, 1493
TfiI GAWTC 5 cut(s) 473, 857, 1258, 1601, 1787
Tru1I TTAA 7 cut(s) 486, 734, 792, 1001, 1520, 1581, 1677
Tru9I TTAA 7 cut(s) 486, 734, 792, 1001, 1520, 1581, 1677
TscAI CASTG 4 cut(s) 410, 543, 640, 1066
TseFI GTSAC 6 cut(s) 80, 281, 299, 1474, 1626, 1961
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 6 cut(s) 80, 281, 299, 1474, 1626, 1961
TspDTI ATGAA 4 cut(s) 499, 564, 639, 699
TspGWI ACGGA 1 cut(s) 1933
TspRI CASTG 4 cut(s) 410, 543, 640, 1066
Vha464I CTTAAG 1 cut(s) 1580
VneI GTGCAC 1 cut(s) 1140
VpaK11BI GGWCC 1 cut(s) 20
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 5 cut(s) 137, 316, 646, 1708, 1801
XceI RCATGY 6 cut(s) 658, 783, 1164, 1428, 1494, 1705
XspI CTAG 8 cut(s) 230, 359, 461, 708, 1251, 1410, 1797, 1943
Zsp2I ATGCAT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.