No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G41550 |
| fragaria_vesca | FvH4_6g24470 FvH4_6g24470 FvH4_6g24470 |
| prunus_persica | Prupe.7G054000_v2.0.a1 |
| pyrus_communis | pycom14g06580 |
| rosa_chinensis | RchiOBHm_Chr3g0483481 |
| rosa_laevigata | RLG00000023277 |
| rosa_multiflora | Rmu_co8490643.1_g000001 Rmu_sc0005045.1_g000039 Rmu_sc0007722.1_g000003 Rmu_sc0007793.1_g000029 |
| rosa_roxburghii | Rroxscaffold_6G00398290 |
| rosa_rugosa | Rorug03G0205900 Rorug03G0206000 Rorug03G0206100 |
| rosa_samantha | Rh3AG254700 Rh3BG292000 Rh3CG289100 Rh3DG284900 Rh3DG285500 |
| rosa_wichuraiana | Rw3G023010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 382 |
| AccB1I | GGYRCC | 1 cut(s) | 1322 |
| AccIII | TCCGGA | 1 cut(s) | 853 |
| AciI | CCGC | 2 cut(s) | 62, 516 |
| AclWI | GGATC | 2 cut(s) | 18, 1748 |
| AcoI | YGGCCR | 1 cut(s) | 597 |
| AcsI | RAATTY | 5 cut(s) | 137, 316, 646, 1708, 1801 |
| AcuI | CTGAAG | 2 cut(s) | 1332, 1464 |
| AcyI | GRCGYC | 1 cut(s) | 542 |
| AfaI | GTAC | 4 cut(s) | 385, 532, 1006, 1495 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 67 |
| AflII | CTTAAG | 1 cut(s) | 1580 |
| AflIII | ACRYGT | 2 cut(s) | 1160, 1490 |
| AhlI | ACTAGT | 1 cut(s) | 358 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1372, 1404 |
| AluBI | AGCT | 8 cut(s) | 438, 827, 864, 907, 1211, 1352, 1915, 1930 |
| AluI | AGCT | 8 cut(s) | 438, 827, 864, 907, 1211, 1352, 1915, 1930 |
| Alw21I | GWGCWC | 3 cut(s) | 504, 1061, 1144 |
| Alw26I | GTCTC | 5 cut(s) | 41, 219, 811, 1542, 1882 |
| Alw44I | GTGCAC | 1 cut(s) | 1140 |
| AlwI | GGATC | 2 cut(s) | 18, 1748 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 374 |
| Aor13HI | TCCGGA | 1 cut(s) | 853 |
| AoxI | GGCC | 2 cut(s) | 174, 597 |
| ApaLI | GTGCAC | 1 cut(s) | 1140 |
| ApeKI | GCWGC | 1 cut(s) | 518 |
| ApoI | RAATTY | 5 cut(s) | 137, 316, 646, 1708, 1801 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 74, 106, 251, 283 |
| AseI | ATTAAT | 1 cut(s) | 486 |
| AspLEI | GCGC | 2 cut(s) | 127, 872 |
| AspS9I | GGNCC | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 3 cut(s) | 311, 652, 1122 |
| AsuII | TTCGAA | 1 cut(s) | 1268 |
| AvaII | GGWCC | 1 cut(s) | 20 |
| BaeGI | GKGCMC | 1 cut(s) | 1144 |
| BalI | TGGCCA | 1 cut(s) | 599 |
| BanI | GGYRCC | 1 cut(s) | 1322 |
| BbsI | GAAGAC | 2 cut(s) | 458, 1314 |
| Bbv12I | GWGCWC | 3 cut(s) | 504, 1061, 1144 |
| BbvI | GCAGC | 1 cut(s) | 530 |
| BccI | CCATC | 2 cut(s) | 31, 1843 |
| BclI | TGATCA | 1 cut(s) | 1078 |
| BcoDI | GTCTC | 5 cut(s) | 41, 219, 811, 1542, 1882 |
| BcuI | ACTAGT | 1 cut(s) | 358 |
| BfaI | CTAG | 8 cut(s) | 230, 359, 461, 708, 1251, 1410, 1797, 1943 |
| BfmI | CTRYAG | 6 cut(s) | 375, 585, 1173, 1401, 1668, 1860 |
| BfrI | CTTAAG | 1 cut(s) | 1580 |
| BfuAI | ACCTGC | 1 cut(s) | 382 |
| BglII | AGATCT | 2 cut(s) | 1576, 1681 |
| BisI | GCNGC | 1 cut(s) | 519 |
| BlsI | GCNGC | 1 cut(s) | 520 |
| Bme18I | GGWCC | 1 cut(s) | 20 |
| BmgT120I | GGNCC | 1 cut(s) | 20 |
| BmiI | GGNNCC | 3 cut(s) | 21, 1324, 1809 |
| BmsI | GCATC | 3 cut(s) | 840, 954, 1594 |
| BpiI | GAAGAC | 2 cut(s) | 458, 1314 |
| BpmI | CTGGAG | 1 cut(s) | 1800 |
| Bpu14I | TTCGAA | 1 cut(s) | 1268 |
| BpuEI | CTTGAG | 2 cut(s) | 18, 65 |
| BsaHI | GRCGYC | 1 cut(s) | 542 |
| BsaJI | CCNNGG | 1 cut(s) | 1500 |
| BsaWI | WCCGGW | 1 cut(s) | 853 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 67 |
| Bse1I | ACTGG | 2 cut(s) | 567, 633 |
| Bse3DI | GCAATG | 1 cut(s) | 1529 |
| BseAI | TCCGGA | 1 cut(s) | 853 |
| BseDI | CCNNGG | 1 cut(s) | 1500 |
| BseGI | GGATG | 4 cut(s) | 28, 683, 854, 1585 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 67 |
| BseMI | GCAATG | 1 cut(s) | 1529 |
| BseMII | CTCAG | 1 cut(s) | 1203 |
| BseNI | ACTGG | 2 cut(s) | 567, 633 |
| BseSI | GKGCMC | 1 cut(s) | 1144 |
| BseXI | GCAGC | 1 cut(s) | 530 |
| BsgI | GTGCAG | 1 cut(s) | 915 |
| BshFI | GGCC | 2 cut(s) | 176, 599 |
| BshNI | GGYRCC | 1 cut(s) | 1322 |
| BsiHKAI | GWGCWC | 3 cut(s) | 504, 1061, 1144 |
| BsiSI | CCGG | 1 cut(s) | 854 |
| BslFI | GGGAC | 2 cut(s) | 768, 1739 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 67 |
| BsmAI | GTCTC | 5 cut(s) | 41, 219, 811, 1542, 1882 |
| BsmBI | CGTCTC | 1 cut(s) | 1542 |
| BsmFI | GGGAC | 2 cut(s) | 768, 1739 |
| BsnI | GGCC | 2 cut(s) | 176, 599 |
| Bsp119I | TTCGAA | 1 cut(s) | 1268 |
| Bsp1286I | GDGCHC | 3 cut(s) | 504, 1061, 1144 |
| Bsp13I | TCCGGA | 1 cut(s) | 853 |
| Bsp143I | GATC | 9 cut(s) | 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761 |
| BspACI | CCGC | 2 cut(s) | 62, 516 |
| BspANI | GGCC | 2 cut(s) | 176, 599 |
| BspCNI | CTCAG | 1 cut(s) | 1204 |
| BspEI | TCCGGA | 1 cut(s) | 853 |
| BspLI | GGNNCC | 3 cut(s) | 21, 1324, 1809 |
| BspMAI | CTGCAG | 4 cut(s) | 379, 589, 1405, 1672 |
| BspMI | ACCTGC | 1 cut(s) | 382 |
| BspPI | GGATC | 2 cut(s) | 18, 1748 |
| BspT104I | TTCGAA | 1 cut(s) | 1268 |
| BspT107I | GGYRCC | 1 cut(s) | 1322 |
| BspTI | CTTAAG | 1 cut(s) | 1580 |
| BsrDI | GCAATG | 1 cut(s) | 1529 |
| BsrI | ACTGG | 2 cut(s) | 567, 633 |
| BssECI | CCNNGG | 1 cut(s) | 1500 |
| BssMI | GATC | 9 cut(s) | 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761 |
| BssNI | GRCGYC | 1 cut(s) | 542 |
| Bst4CI | ACNGT | 5 cut(s) | 305, 1039, 1359, 1451, 1861 |
| Bst6I | CTCTTC | 5 cut(s) | 152, 222, 833, 1364, 1460 |
| BstACI | GRCGYC | 1 cut(s) | 542 |
| BstAFI | CTTAAG | 1 cut(s) | 1580 |
| BstBI | TTCGAA | 1 cut(s) | 1268 |
| BstC8I | GCNNGC | 6 cut(s) | 168, 585, 656, 777, 829, 1703 |
| BstDEI | CTNAG | 1 cut(s) | 1212 |
| BstF5I | GGATG | 4 cut(s) | 28, 683, 854, 1585 |
| BstHHI | GCGC | 2 cut(s) | 127, 872 |
| BstKTI | GATC | 9 cut(s) | 13, 560, 1081, 1182, 1318, 1579, 1684, 1756, 1764 |
| BstMAI | GTCTC | 5 cut(s) | 41, 219, 811, 1542, 1882 |
| BstMBI | GATC | 9 cut(s) | 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761 |
| BstNSI | RCATGY | 6 cut(s) | 658, 783, 1164, 1428, 1494, 1705 |
| BstSFI | CTRYAG | 6 cut(s) | 375, 585, 1173, 1401, 1668, 1860 |
| BstSLI | GKGCMC | 1 cut(s) | 1144 |
| BstV1I | GCAGC | 1 cut(s) | 530 |
| BstV2I | GAAGAC | 2 cut(s) | 458, 1314 |
| BstX2I | RGATCY | 4 cut(s) | 10, 1576, 1681, 1753 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 574 |
| BstYI | RGATCY | 4 cut(s) | 10, 1576, 1681, 1753 |
| BsuRI | GGCC | 2 cut(s) | 176, 599 |
| BtsCI | GGATG | 4 cut(s) | 28, 683, 854, 1585 |
| BtsI | GCAGTG | 1 cut(s) | 410 |
| BtsIMutI | CAGTG | 4 cut(s) | 410, 536, 640, 1059 |
| BveI | ACCTGC | 1 cut(s) | 382 |
| Cac8I | GCNNGC | 6 cut(s) | 168, 585, 656, 777, 829, 1703 |
| CaiI | CAGNNNCTG | 1 cut(s) | 374 |
| CfoI | GCGC | 2 cut(s) | 127, 872 |
| Cfr13I | GGNCC | 1 cut(s) | 20 |
| CseI | GACGC | 4 cut(s) | 550, 818, 1559, 1736 |
| Csp6I | GTAC | 4 cut(s) | 384, 531, 1005, 1494 |
| CviQI | GTAC | 4 cut(s) | 384, 531, 1005, 1494 |
| DdeI | CTNAG | 1 cut(s) | 1212 |
| DpnI | GATC | 9 cut(s) | 12, 559, 1080, 1181, 1317, 1578, 1683, 1755, 1763 |
| DpnII | GATC | 9 cut(s) | 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761 |
| EaeI | YGGCCR | 1 cut(s) | 597 |
| Eam1104I | CTCTTC | 5 cut(s) | 152, 222, 833, 1364, 1460 |
| EarI | CTCTTC | 5 cut(s) | 152, 222, 833, 1364, 1460 |
| Eco32I | GATATC | 1 cut(s) | 109 |
| Eco47I | GGWCC | 1 cut(s) | 20 |
| Eco57I | CTGAAG | 2 cut(s) | 1332, 1464 |
| EcoRI | GAATTC | 1 cut(s) | 316 |
| EcoRV | GATATC | 1 cut(s) | 109 |
| EcoT22I | ATGCAT | 1 cut(s) | 656 |
| Esp3I | CGTCTC | 1 cut(s) | 1542 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 27, 59 |
| FaqI | GGGAC | 2 cut(s) | 768, 1739 |
| FauI | CCCGC | 2 cut(s) | 69, 523 |
| FauNDI | CATATG | 2 cut(s) | 263, 1813 |
| FbaI | TGATCA | 1 cut(s) | 1078 |
| Fnu4HI | GCNGC | 1 cut(s) | 519 |
| FokI | GGATG | 4 cut(s) | 15, 690, 861, 1572 |
| Fsp4HI | GCNGC | 1 cut(s) | 519 |
| FspBI | CTAG | 8 cut(s) | 230, 359, 461, 708, 1251, 1410, 1797, 1943 |
| GlaI | GCGC | 2 cut(s) | 126, 871 |
| GluI | GCNGC | 1 cut(s) | 519 |
| GsuI | CTGGAG | 1 cut(s) | 1800 |
| HaeIII | GGCC | 2 cut(s) | 176, 599 |
| HapII | CCGG | 1 cut(s) | 854 |
| HgaI | GACGC | 4 cut(s) | 550, 818, 1559, 1736 |
| HhaI | GCGC | 2 cut(s) | 127, 872 |
| Hin1I | GRCGYC | 1 cut(s) | 542 |
| Hin6I | GCGC | 2 cut(s) | 125, 870 |
| HinP1I | GCGC | 2 cut(s) | 125, 870 |
| HincII | GTYRAC | 1 cut(s) | 1936 |
| HindII | GTYRAC | 1 cut(s) | 1936 |
| HinfI | GANTC | 7 cut(s) | 473, 857, 995, 1258, 1381, 1601, 1787 |
| HpaII | CCGG | 1 cut(s) | 854 |
| HphI | GGTGA | 3 cut(s) | 311, 652, 1122 |
| Hpy166II | GTNNAC | 5 cut(s) | 227, 1086, 1142, 1868, 1936 |
| Hpy188I | TCNGA | 9 cut(s) | 70, 742, 882, 950, 1078, 1263, 1606, 1761, 1842 |
| Hpy188III | TCNNGA | 7 cut(s) | 313, 321, 806, 835, 854, 1589, 1779 |
| Hpy8I | GTNNAC | 5 cut(s) | 227, 1086, 1142, 1868, 1936 |
| HpyAV | CCTTC | 5 cut(s) | 711, 767, 1064, 1179, 1210 |
| HpyCH4III | ACNGT | 5 cut(s) | 305, 1039, 1359, 1451, 1861 |
| HpyF3I | CTNAG | 1 cut(s) | 1212 |
| Hsp92I | GRCGYC | 1 cut(s) | 542 |
| HspAI | GCGC | 2 cut(s) | 125, 870 |
| Kpn2I | TCCGGA | 1 cut(s) | 853 |
| Ksp22I | TGATCA | 1 cut(s) | 1078 |
| Kzo9I | GATC | 9 cut(s) | 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761 |
| LmnI | GCTCC | 3 cut(s) | 443, 1056, 1927 |
| Lsp1109I | GCAGC | 1 cut(s) | 530 |
| LweI | GCATC | 3 cut(s) | 840, 954, 1594 |
| MaeI | CTAG | 8 cut(s) | 230, 359, 461, 708, 1251, 1410, 1797, 1943 |
| MaeIII | GTNAC | 7 cut(s) | 80, 281, 299, 971, 1474, 1626, 1961 |
| MalI | GATC | 9 cut(s) | 12, 559, 1080, 1181, 1317, 1578, 1683, 1755, 1763 |
| MboI | GATC | 9 cut(s) | 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761 |
| MflI | RGATCY | 4 cut(s) | 10, 1576, 1681, 1753 |
| MhlI | GDGCHC | 3 cut(s) | 504, 1061, 1144 |
| MlsI | TGGCCA | 1 cut(s) | 599 |
| MluNI | TGGCCA | 1 cut(s) | 599 |
| MlyI | GAGTC | 2 cut(s) | 1004, 1375 |
| MmeI | TCCRAC | 2 cut(s) | 905, 1847 |
| Mox20I | TGGCCA | 1 cut(s) | 599 |
| Mph1103I | ATGCAT | 1 cut(s) | 656 |
| MroI | TCCGGA | 1 cut(s) | 853 |
| MscI | TGGCCA | 1 cut(s) | 599 |
| MseI | TTAA | 7 cut(s) | 486, 734, 792, 1001, 1520, 1581, 1677 |
| Msp20I | TGGCCA | 1 cut(s) | 599 |
| MspA1I | CMGCKG | 1 cut(s) | 827 |
| MspCI | CTTAAG | 1 cut(s) | 1580 |
| MspI | CCGG | 1 cut(s) | 854 |
| NdeI | CATATG | 2 cut(s) | 263, 1813 |
| NdeII | GATC | 9 cut(s) | 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761 |
| NlaIV | GGNNCC | 3 cut(s) | 21, 1324, 1809 |
| NmeAIII | GCCGAG | 1 cut(s) | 1525 |
| NmuCI | GTSAC | 6 cut(s) | 80, 281, 299, 1474, 1626, 1961 |
| NsiI | ATGCAT | 1 cut(s) | 656 |
| NspI | RCATGY | 6 cut(s) | 658, 783, 1164, 1428, 1494, 1705 |
| NspV | TTCGAA | 1 cut(s) | 1268 |
| PaeI | GCATGC | 2 cut(s) | 658, 1705 |
| PciI | ACATGT | 2 cut(s) | 1160, 1490 |
| PfeI | GAWTC | 5 cut(s) | 473, 857, 1258, 1601, 1787 |
| PkrI | GCNGC | 1 cut(s) | 520 |
| PleI | GAGTC | 2 cut(s) | 1003, 1375 |
| PpsI | GAGTC | 2 cut(s) | 1003, 1375 |
| PscI | ACATGT | 2 cut(s) | 1160, 1490 |
| PshBI | ATTAAT | 1 cut(s) | 486 |
| PspN4I | GGNNCC | 3 cut(s) | 21, 1324, 1809 |
| PspPI | GGNCC | 1 cut(s) | 20 |
| PstI | CTGCAG | 4 cut(s) | 379, 589, 1405, 1672 |
| PstNI | CAGNNNCTG | 1 cut(s) | 374 |
| PsuI | RGATCY | 4 cut(s) | 10, 1576, 1681, 1753 |
| PvuII | CAGCTG | 1 cut(s) | 827 |
| RsaI | GTAC | 4 cut(s) | 385, 532, 1006, 1495 |
| RsaNI | GTAC | 4 cut(s) | 384, 531, 1005, 1494 |
| SaqAI | TTAA | 7 cut(s) | 486, 734, 792, 1001, 1520, 1581, 1677 |
| SatI | GCNGC | 1 cut(s) | 519 |
| Sau3AI | GATC | 9 cut(s) | 10, 557, 1078, 1179, 1315, 1576, 1681, 1753, 1761 |
| Sau96I | GGNCC | 1 cut(s) | 20 |
| SchI | GAGTC | 2 cut(s) | 1004, 1375 |
| SduI | GDGCHC | 3 cut(s) | 504, 1061, 1144 |
| SfaNI | GCATC | 3 cut(s) | 840, 954, 1594 |
| SfcI | CTRYAG | 6 cut(s) | 375, 585, 1173, 1401, 1668, 1860 |
| SfuI | TTCGAA | 1 cut(s) | 1268 |
| SinI | GGWCC | 1 cut(s) | 20 |
| SmlI | CTYRAG | 3 cut(s) | 33, 44, 1580 |
| SmoI | CTYRAG | 3 cut(s) | 33, 44, 1580 |
| SpeI | ACTAGT | 1 cut(s) | 358 |
| SphI | GCATGC | 2 cut(s) | 658, 1705 |
| SsiI | CCGC | 2 cut(s) | 62, 516 |
| SspMI | CTAG | 8 cut(s) | 230, 359, 461, 708, 1251, 1410, 1797, 1943 |
| TaaI | ACNGT | 5 cut(s) | 305, 1039, 1359, 1451, 1861 |
| TaqI | TCGA | 3 cut(s) | 320, 345, 1268 |
| TatI | WGTACW | 2 cut(s) | 383, 1493 |
| TfiI | GAWTC | 5 cut(s) | 473, 857, 1258, 1601, 1787 |
| Tru1I | TTAA | 7 cut(s) | 486, 734, 792, 1001, 1520, 1581, 1677 |
| Tru9I | TTAA | 7 cut(s) | 486, 734, 792, 1001, 1520, 1581, 1677 |
| TscAI | CASTG | 4 cut(s) | 410, 543, 640, 1066 |
| TseFI | GTSAC | 6 cut(s) | 80, 281, 299, 1474, 1626, 1961 |
| TseI | GCWGC | 1 cut(s) | 518 |
| Tsp45I | GTSAC | 6 cut(s) | 80, 281, 299, 1474, 1626, 1961 |
| TspDTI | ATGAA | 4 cut(s) | 499, 564, 639, 699 |
| TspGWI | ACGGA | 1 cut(s) | 1933 |
| TspRI | CASTG | 4 cut(s) | 410, 543, 640, 1066 |
| Vha464I | CTTAAG | 1 cut(s) | 1580 |
| VneI | GTGCAC | 1 cut(s) | 1140 |
| VpaK11BI | GGWCC | 1 cut(s) | 20 |
| VspI | ATTAAT | 1 cut(s) | 486 |
| XapI | RAATTY | 5 cut(s) | 137, 316, 646, 1708, 1801 |
| XceI | RCATGY | 6 cut(s) | 658, 783, 1164, 1428, 1494, 1705 |
| XspI | CTAG | 8 cut(s) | 230, 359, 461, 708, 1251, 1410, 1797, 1943 |
| Zsp2I | ATGCAT | 1 cut(s) | 656 |