Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005045.1

Orthogroup ID

OG0009279

Physical Location & Seq

Genomic Coordinates Forward (+)

115588 .. 116691

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005045.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ctgttgctcaaattgggccgccatcctctctgcatcactctgggtaacaagattggctgtccaaatgagtctttaaagactgctgggaatggaagaaatcatcgacaaacagtcaagtttcaaggccggatcactgatgaggaagattctgatcagtttggaacagcaaaagaaactcaaaaggatgagaatgctgatcttgatggtaagcccctcttgcccttgggtttgaaaccacaaaggccaaagcgaaagaggaagttaccgttgactgtgcagaatgtccaagaaacatgttttccttctacagaaatgagttcaaatacgacgtttatttcaaaagctcaaaaggaacaaaaatccaaagtaattgatgactatactaggttaaatcagttttttggttcgaagcagtgtgaaaaatcagaccatcttgaacaatatgaagacaaagaacatgccacctctcttggtaacggtaaaacttcagcttcacagttgcaaaagaagaggaaaaggactccaagtttccattttactgcagacactgaagaatgcactggatatctaggctcgaaagatttacacaaggatgtgcaaaagaagaggaaagtgacgtcaactttgacacctcctgcagaggttaaaggtttgtcctttttgggattgcaagattcacacacagacgcaactaatggttctattgaggaagatctcaagcatccagaaaaggaagatccaaatattgtagaggcttcaaagtcacaaaagcagaggaaaatgacttcagctttcccacttcctgcagaaagtaaagatttgcctttaggtttgggcttgcaagatttacacaaagacagggacacaactaatggttggactgaggaagatcctctgatcgtaaagtcctattctggagatgattctcaagctaggaatttggttccgtatgcaattccaactcctattccaagtctgaaattgaaggaaatgacagtaggtcaactgaaggaattggcaaagaggctcaaagtgaaaggcttttccaagcttaagaaaatggagctggttgagctactagccaggaaacagagaggtcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rho_N

Protein Analysis

367

Amino Acids

41.15

Weight (kDa)

9.26

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41550
fragaria_vesca	FvH4_6g24470 FvH4_6g24470 FvH4_6g24470
prunus_persica	Prupe.7G054000_v2.0.a1
pyrus_communis	pycom14g06580
rosa_chinensis	RchiOBHm_Chr3g0483481
rosa_laevigata	RLG00000023277
rosa_multiflora	Rmu_co8490643.1_g000001 Rmu_sc0005045.1_g000039 Rmu_sc0007722.1_g000003 Rmu_sc0007793.1_g000029
rosa_roxburghii	Rroxscaffold_6G00398290
rosa_rugosa	Rorug03G0205900 Rorug03G0206000 Rorug03G0206100
rosa_samantha	Rh3AG254700 Rh3BG292000 Rh3CG289100 Rh3DG284900 Rh3DG285500
rosa_wichuraiana	Rw3G023010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	620
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	3 cut(s)	137, 731, 884
AcsI	RAATTY	1 cut(s)	937
AcuI	CTGAAG	4 cut(s)	471, 570, 771, 1028
AcyI	GRCGYC	1 cut(s)	617
AflII	CTTAAG	1 cut(s)	1052
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	7 cut(s)	122, 232, 321, 339, 437, 759, 985
AhdI	GACNNNNNGTC	2 cut(s)	110, 999
AjnI	CCWGG	1 cut(s)	1082
AluBI	AGCT	7 cut(s)	344, 491, 791, 932, 1051, 1066, 1075
AluI	AGCT	7 cut(s)	344, 491, 791, 932, 1051, 1066, 1075
AlwI	GGATC	3 cut(s)	137, 731, 884
AlwNI	CAGNNNCTG	1 cut(s)	548
AoxI	GGCC	3 cut(s)	16, 124, 242
ApoI	RAATTY	1 cut(s)	937
ArsI	GACNNNNNNTTYG	2 cut(s)	607, 639
AspS9I	GGNCC	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	453
BccI	CCATC	3 cut(s)	30, 197, 438
BciT130I	CCWGG	1 cut(s)	1084
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	5 cut(s)	384, 569, 933, 1079, 1102
BfmI	CTRYAG	4 cut(s)	306, 540, 636, 804
BfrI	CTTAAG	1 cut(s)	1052
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	1084
BmeRI	GACNNNNNGTC	2 cut(s)	110, 999
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	945
BmrFI	CCNGG	1 cut(s)	1084
BmsI	GCATC	2 cut(s)	42, 730
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	936
Bpu14I	TTCGAA	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	701, 912
BsaBI	GATNNNNATC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	617
BsaJI	CCNNGG	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	565
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	1084
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	4 cut(s)	22, 190, 598, 721
BseJI	GATNNNNATC	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	1 cut(s)	565
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	3 cut(s)	18, 126, 244
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	875
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	2 cut(s)	196, 560
BsnI	GGCC	3 cut(s)	18, 126, 244
Bsp119I	TTCGAA	1 cut(s)	407
Bsp143I	GATC	7 cut(s)	129, 151, 196, 712, 736, 889, 897
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	18, 126, 244
BspCNI	CTCAG	1 cut(s)	874
BspLI	GGNNCC	1 cut(s)	945
BspMAI	CTGCAG	3 cut(s)	544, 640, 808
BspPI	GGATC	3 cut(s)	137, 731, 884
BspT104I	TTCGAA	1 cut(s)	407
BspTI	CTTAAG	1 cut(s)	1052
BsrI	ACTGG	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	7 cut(s)	129, 151, 196, 712, 736, 889, 897
BssNI	GRCGYC	1 cut(s)	617
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	1084
Bst4CI	ACNGT	6 cut(s)	112, 267, 274, 479, 498, 997
Bst6I	CTCTTC	2 cut(s)	503, 599
BstACI	GRCGYC	1 cut(s)	617
BstAFI	CTTAAG	1 cut(s)	1052
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	1 cut(s)	882
BstF5I	GGATG	4 cut(s)	22, 190, 598, 721
BstKTI	GATC	7 cut(s)	132, 154, 199, 715, 739, 892, 900
BstMBI	GATC	7 cut(s)	129, 151, 196, 712, 736, 889, 897
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 1072
BstNI	CCWGG	1 cut(s)	1084
BstNSI	RCATGY	2 cut(s)	297, 461
BstSCI	CCNGG	1 cut(s)	1082
BstSFI	CTRYAG	4 cut(s)	306, 540, 636, 804
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	3 cut(s)	712, 736, 889
BstYI	RGATCY	3 cut(s)	712, 736, 889
BsuRI	GGCC	3 cut(s)	18, 126, 244
BtsCI	GGATG	4 cut(s)	22, 190, 598, 721
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	4 cut(s)	132, 419, 546, 558
Cac8I	GCNNGC	1 cut(s)	839
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	1 cut(s)	695
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	2 cut(s)	294, 458
DdeI	CTNAG	1 cut(s)	882
DpnI	GATC	7 cut(s)	131, 153, 198, 714, 738, 891, 899
DpnII	GATC	7 cut(s)	129, 151, 196, 712, 736, 889, 897
DraI	TTTAAA	1 cut(s)	75
DriI	GACNNNNNGTC	2 cut(s)	110, 999
Eam1104I	CTCTTC	2 cut(s)	503, 599
Eam1105I	GACNNNNNGTC	2 cut(s)	110, 999
EarI	CTCTTC	2 cut(s)	503, 599
Eco130I	CCWWGG	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	566
Eco57I	CTGAAG	4 cut(s)	471, 570, 771, 1028
EcoRII	CCWGG	1 cut(s)	1082
EcoRV	GATATC	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	297, 461
FaiI	YATR	5 cut(s)	295, 381, 444, 459, 951
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	2 cut(s)	293, 457
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	4 cut(s)	9, 197, 605, 708
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	5 cut(s)	384, 569, 933, 1079, 1102
GluI	GCNGC	1 cut(s)	19
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	936
HaeIII	GGCC	3 cut(s)	18, 126, 244
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	695
Hin1I	GRCGYC	1 cut(s)	617
Hin1II	CATG	2 cut(s)	297, 461
HincII	GTYRAC	3 cut(s)	270, 621, 1004
HindII	GTYRAC	3 cut(s)	270, 621, 1004
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	5 cut(s)	68, 146, 520, 674, 923
HpaII	CCGG	1 cut(s)	127
Hpy166II	GTNNAC	3 cut(s)	270, 621, 1004
Hpy188I	TCNGA	4 cut(s)	151, 427, 897, 978
Hpy188III	TCNNGA	4 cut(s)	200, 434, 725, 915
Hpy8I	GTNNAC	3 cut(s)	270, 621, 1004
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	3 cut(s)	312, 979, 1003
HpyCH4III	ACNGT	6 cut(s)	112, 267, 274, 479, 498, 997
HpyCH4IV	ACGT	2 cut(s)	329, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 1072
HpyF3I	CTNAG	1 cut(s)	882
HpySE526I	ACGT	2 cut(s)	329, 617
Hsp92I	GRCGYC	1 cut(s)	617
Hsp92II	CATG	2 cut(s)	297, 461
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	7 cut(s)	129, 151, 196, 712, 736, 889, 897
LmnI	GCTCC	1 cut(s)	1063
LweI	GCATC	2 cut(s)	42, 730
MaeI	CTAG	5 cut(s)	384, 569, 933, 1079, 1102
MaeII	ACGT	2 cut(s)	329, 617
MaeIII	GTNAC	6 cut(s)	44, 261, 473, 613, 762, 1097
MalI	GATC	7 cut(s)	131, 153, 198, 714, 738, 891, 899
MboI	GATC	7 cut(s)	129, 151, 196, 712, 736, 889, 897
MboII	GAAGA	9 cut(s)	105, 155, 458, 520, 563, 616, 722, 746, 899
MflI	RGATCY	3 cut(s)	712, 736, 889
MluCI	AATT	6 cut(s)	11, 369, 937, 954, 980, 1013
MlyI	GAGTC	2 cut(s)	77, 514
MmeI	TCCRAC	2 cut(s)	857, 983
MseI	TTAA	4 cut(s)	74, 389, 645, 1053
MslI	CAYNNNNRTG	1 cut(s)	591
MspCI	CTTAAG	1 cut(s)	1052
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	1084
Mva1269I	GAATGC	2 cut(s)	196, 560
MvaI	CCWGG	1 cut(s)	1084
MwoI	GCNNNNNNNGC	2 cut(s)	217, 1072
NdeII	GATC	7 cut(s)	129, 151, 196, 712, 736, 889, 897
NlaIII	CATG	2 cut(s)	297, 461
NlaIV	GGNNCC	1 cut(s)	945
NmuCI	GTSAC	3 cut(s)	613, 762, 1097
NspI	RCATGY	2 cut(s)	297, 461
NspV	TTCGAA	1 cut(s)	407
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	2 cut(s)	196, 560
PfeI	GAWTC	3 cut(s)	146, 674, 923
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	2 cut(s)	76, 514
PpsI	GAGTC	2 cut(s)	76, 514
PscI	ACATGT	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	1082
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	1082
PspN4I	GGNNCC	1 cut(s)	945
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	3 cut(s)	544, 640, 808
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	3 cut(s)	712, 736, 889
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	4 cut(s)	74, 389, 645, 1053
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	7 cut(s)	129, 151, 196, 712, 736, 889, 897
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	2 cut(s)	77, 514
ScrFI	CCNGG	1 cut(s)	1084
SfaNI	GCATC	2 cut(s)	42, 730
SfcI	CTRYAG	4 cut(s)	306, 540, 636, 804
SfuI	TTCGAA	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	3 cut(s)	716, 927, 1052
SmoI	CTYRAG	3 cut(s)	716, 927, 1052
Sse9I	AATT	6 cut(s)	11, 369, 937, 954, 980, 1013
SsiI	CCGC	1 cut(s)	19
SspI	AATATT	1 cut(s)	745
SspMI	CTAG	5 cut(s)	384, 569, 933, 1079, 1102
StyD4I	CCNGG	1 cut(s)	1082
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	6 cut(s)	112, 267, 274, 479, 498, 997
TaiI	ACGT	2 cut(s)	332, 620
TaqI	TCGA	3 cut(s)	103, 407, 575
TasI	AATT	6 cut(s)	11, 369, 937, 954, 980, 1013
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	146, 674, 923
Tru1I	TTAA	4 cut(s)	74, 389, 645, 1053
Tru9I	TTAA	4 cut(s)	74, 389, 645, 1053
TscAI	CASTG	4 cut(s)	139, 419, 553, 565
TseFI	GTSAC	3 cut(s)	613, 762, 1097
Tsp45I	GTSAC	3 cut(s)	613, 762, 1097
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	1 cut(s)	936
TspRI	CASTG	4 cut(s)	139, 419, 553, 565
Vha464I	CTTAAG	1 cut(s)	1052
XapI	RAATTY	1 cut(s)	937
XceI	RCATGY	2 cut(s)	297, 461
XspI	CTAG	5 cut(s)	384, 569, 933, 1079, 1102
ZraI	GACGTC	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.