Rorug03G0206000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009279
Physical Location & Seq
Reverse (-)
18266078 .. 18266554
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0206000.1

Sequence Viewer

Length: 477 bp
ATGAAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGCAGGTGGAGCAGTACCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAAAGCAGGTTCAGAGGATCACTCTCCAGCTGAAACGGTATGGAAAGATCGAGAACAAGAACGTCTTTTATTGGTTCGTGAACCACAGGGCTCGGGAGAAGCAGAAGAATAAGATCACTTCGGATGTTCATGTGCCTATGCAAAGATCAGGGCTTGTTGGTAATGGTAATTGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATGATTGCTTTTAAAGGGCAAATGGGGAACTATGGTGGTTATGGATCTATGAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rho_N

Protein Analysis

158

Amino Acids

17.72

Weight (kDa)

10.05

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 6.7e-12 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 69
Acc36I ACCTGC 2 cut(s) 69, 166
AclWI GGATC 4 cut(s) 194, 369, 388, 469
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 2 cut(s) 91, 343
AflIII ACRYGT 1 cut(s) 471
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 3 cut(s) 136, 199, 410
AluI AGCT 3 cut(s) 136, 199, 410
AlwI GGATC 4 cut(s) 194, 369, 388, 469
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 357
BanII GRGCYC 1 cut(s) 262
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 55
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 2 cut(s) 69, 166
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 55, 94
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 55, 94
BmsI GCATC 1 cut(s) 398
BplI GAGNNNNNCTC 2 cut(s) 175, 207
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 27
Bse21I CCTNAGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 298
BseJI GATNNNNATC 1 cut(s) 122
BseMII CTCAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 8 cut(s) 112, 186, 216, 282, 314, 361, 380, 461
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 161
BspMI ACCTGC 2 cut(s) 69, 166
BspPI GGATC 4 cut(s) 194, 369, 388, 469
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 8 cut(s) 112, 186, 216, 282, 314, 361, 380, 461
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 37, 298
BstKTI GATC 8 cut(s) 115, 189, 219, 285, 317, 364, 383, 464
BstMBI GATC 8 cut(s) 112, 186, 216, 282, 314, 361, 380, 461
BstMWI GCNNNNNNNGC 2 cut(s) 84, 407
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 2 cut(s) 73, 475
BstSCI CCNGG 2 cut(s) 53, 92
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 2 cut(s) 380, 461
BstYI RGATCY 2 cut(s) 380, 461
Bsu36I CCTNAGG 1 cut(s) 357
BtsCI GGATG 2 cut(s) 37, 298
BveI ACCTGC 2 cut(s) 69, 166
Cfr13I GGNCC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 342
CviAII CATG 3 cut(s) 70, 299, 472
CviJI RGCY 6 cut(s) 53, 136, 199, 260, 322, 410
CviKI_1 RGCY 6 cut(s) 53, 136, 199, 260, 322, 410
CviQI GTAC 2 cut(s) 90, 342
DdeI CTNAG 1 cut(s) 357
DpnI GATC 8 cut(s) 114, 188, 218, 284, 316, 363, 382, 463
DpnII GATC 8 cut(s) 112, 186, 216, 282, 314, 361, 380, 461
DraI TTTAAA 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 390
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 3 cut(s) 73, 302, 475
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 69, 298, 471
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 44, 305
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 1 cut(s) 54
Hin1II CATG 3 cut(s) 73, 302, 475
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 99, 250
Hpy188I TCNGA 4 cut(s) 117, 183, 292, 380
Hpy188III TCNNGA 3 cut(s) 220, 247, 263
Hpy8I GTNNAC 2 cut(s) 99, 250
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 78, 310, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 407
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 3 cut(s) 73, 302, 475
Kzo9I GATC 8 cut(s) 112, 186, 216, 282, 314, 361, 380, 461
LmnI GCTCC 2 cut(s) 84, 133
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 398
MabI ACCWGGT 1 cut(s) 92
MaeII ACGT 1 cut(s) 231
MalI GATC 8 cut(s) 114, 188, 218, 284, 316, 363, 382, 463
MboI GATC 8 cut(s) 112, 186, 216, 282, 314, 361, 380, 461
MboII GAAGA 3 cut(s) 286, 375, 396
MfeI CAATTG 1 cut(s) 346
MflI RGATCY 2 cut(s) 380, 461
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 2 cut(s) 337, 346
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 5 cut(s) 22, 29, 137, 177, 352
MseI TTAA 2 cut(s) 372, 429
MspA1I CMGCKG 2 cut(s) 199, 410
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 55, 94
MunI CAATTG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 84, 407
NciI CCSGG 1 cut(s) 55
NdeII GATC 8 cut(s) 112, 186, 216, 282, 314, 361, 380, 461
NlaIII CATG 3 cut(s) 73, 302, 475
NlaIV GGNNCC 1 cut(s) 161
NspI RCATGY 2 cut(s) 73, 475
PaqCI CACCTGC 1 cut(s) 69
PciI ACATGT 1 cut(s) 471
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 159
PscI ACATGT 1 cut(s) 471
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsuI RGATCY 2 cut(s) 380, 461
PvuII CAGCTG 2 cut(s) 199, 410
RsaI GTAC 2 cut(s) 91, 343
RsaNI GTAC 2 cut(s) 90, 342
SaqAI TTAA 2 cut(s) 372, 429
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 8 cut(s) 112, 186, 216, 282, 314, 361, 380, 461
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 55, 94
SduI GDGCHC 1 cut(s) 262
SetI ASST 9 cut(s) 83, 98, 138, 161, 180, 201, 234, 358, 412
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 1 cut(s) 398
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 337, 346
StyD4I CCNGG 2 cut(s) 53, 92
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 337, 346
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 372, 429
Tru9I TTAA 2 cut(s) 372, 429
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 17, 287
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 2 cut(s) 73, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.