Rh3DG284900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009279
Physical Location & Seq
Forward (+)
29050924 .. 29060885
9962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG284900.1

Sequence Viewer

Length: 2877 bp
ATGACGCCACCACCACTAAAGCCGCCTCTGCCGCCAGGTTCACTTCCGTTGCCGATCCCAAGGCTAACCACAACTTCGCCACCCTCCGTGACCGAAAGTACACACCATCACCACACGGGGTCAACCCCGTGCACCCCATATCTGCCAAAACTAGTTTCAAATCCCCCGGCACCACCCTCACTCACTCACTCGGAGTCTCTCGCTTTCCCCTCAGGATATTTCTTGCAATTCATGGCTTGGGATCTCTGGGGTCCGTCACCTCCTCAAGTTGAACTTGGGACTACTTACTTCCCGGAATCTGAATGGCAGTGTGACTTTTACTTTGGTTATGGACACGATGTTATAGAAGAAAATGCGCTAAATGAGAAACTTTGTTTAGAAGTAGTGAGGAGATTGATAGCAAAGACCGATACTGAAATTGATGAACTCGAAAAGGATTTGGTGTCTCTTCAAAGCGAACTAGCGTGGGCTAAACATGAAGAATGGCCTGACACATGTTGTGGTGCATTGAGAGAAAAGATTGCTTTCCTTGACAGTTCTCTTAGGAACTTGAGAAATAAAGATGAGAGTAATATTGAGGTTCAGTCGCTGATGCATACAGAACCTGCAGAGAGTATAGATGAGATAATGAAGGATCTTCTTCAAAAATACATCGTGGAGAAAGATGAGCAGCCTGCAAAGACTGAGATCATAGATTCCAGCTTAGAATCTTGGAGAATTGCTGCTGGCTACTCTGAAAACAAGAAAACGTCAAGCGAGAGTAATTCAGAAAGCAGTAGGCAATCGGAGGCCAAAGGACAAGGTCCTGAAGAAAAGGAAACATCAAGAATGACTTCTAACAATGAACAGCCTGCAAATACTATTACTATGAATTCCAGCTCTGATTCTTTGGGACTTGCAGCTGGATTCACCGAAAAGAAGTTTACGTCAAGTAATAGTAGTACAGAAAGCAGTAGGCAGTGTGAGGCAAAAGGTCAAGGTGTAGTTCCTGAAGAAAAGGAATCATCATGTATGATCAACAACAAACAGCCTGCACAAACTAGTATCATGGGCTCCAGCCCATATTCTTTGAAACTTACAGCTGGCTACATTGACAAGAAAACAACAAGCAGTTGTGATTCCGAAAGCACTAGGCCATGGGAGGCCAAAGGACTAGGTTTTCTTACTGAAGAAAAGGAAATGATTCCAACTGCATCTTCGCACTATGAAGGAAATCGTATGCAAAATTCAAAAGTTAAGTGTATGAGTACAAAATATTCAACTAGTGTCAGCTCCATTGGTGAGAAGACAAGGCAAGAAAGTTTTGATTCTAAACTGATTGATGAGGTGGTAGAGCACTCTTTGATACCTACAGCAGATAATATAGGTACTTCACAGAGGCCTGATGGACATGAATCAGATGTCAGTAAAACGGTTGAGCCCCCAGATGTTATTGCCAGCGATTCTCTTATATATGGAAATGGCTGTTCCAGTGAGGTGAAAAATTCATGCATGCCTATTTTGACAGAAAATGGATGTGATGAAATGAGGAAACAGCTTTCTACTGCTACAGCTACAAGTCAAACCTCGATGTCATCTTTAACTCCTGAAATCAAGGCAACCCTTCAAAATACCAAAAAGCCTGCATGTTCCCTTGTTAAGTATGGTGGTGAAGATACTTTGAGAGAATCAGCTGGCATCAAGAAGAGTAATGAATGTTTGGAATCCAGATTGTGTGCTTTAAGCCCGACAAAAGGTGATGTAGAGCAAAAGCTAATTGACTTTGTTCCGCAAACTGCACTAAAAGTGGGCATTAAAGAATCAAAGATGACTCTGGGTAACAAGATTGGCTGTCCAAATAAGTCTTTAAAGACTGCTGGGAATGGGAGAAATCATCGACAAACAGTCAAGTTTCAAGGCCAGATCACTGATGAGGAAGATTCTGATCAGTTTGGAACAGCAAAAGAAATTCAAAAGGATGAGAATGCTGATCTTGATGGTAAGCCCCTCTTGCCCTTGGGTTTGAAACCACAAAGGCCAAAGCGAAAGAGGAAGTTACCGTTGACTGTGCAGAATGTCCAAGAAACATGTTTTCCTTCTACAGAAATGAGTTCAAATACGACGTTTATTTCAAAAGCTCAAAAGGAACAAAAATCCAAAGTAATTGATGACTATACTAGGTTAAATCAGTTTTTTGGTTCGAAGCAGTGTGAAAAATCAGACCATCTTGAACAATATGAAGACAAAGAACATGCCACCTCTCTTGGTAACGGTAAAACTTCAGCTTCACAGTTGCAAAAGAAGAGGAAAAGGACTCCAAGTTTCCATTTTACTGCAGACACTGAAGAATGCACTGGATATCTAGGCTCGAAAGATTTACACAAGGATGTGCAAAAGAAGAGGAAAGTGACGTCAACTTTGACACCTCCTGCAGAGGTTAAAGGTTTGTCCTTTTTGGGATTGCAAGATTCACACACAGACGCAACTAATGGTTCTATTGAGGAAGATCTCAAGCATCCAGAAAAGGAAGATCCAAATATTGTAGAGGCTTCAAAGTCACAAAAGCAGAGGAAAATGACTTCAGCTTTCCCACTTCCTGCAGAAAGTAAAGATTTGCCTTTAGGTTTGGGCTTGCAAGATTTACACAAAGACAGGGACACAACTAATGGTTGGACTGAGGAAGATCCTCTGATCGTAAAGTCCTATTCTGGAGATGATTCTCAAGCTAGGAATTTGGTTCCGTATGCAATTCCAACTCCTATTCCAAGTCTGAAATTGAAGGAAATGACAGTAGGTCAACTGAAGGAATTGGCAAAGAGGCTCAAAGTGAAAGGCTTTTCCAAGCTTAAGAAAATGGAGCTGGTTGAGCTACTAGCCAGGAAACAGAGAGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rho_N

Protein Analysis

958

Amino Acids

105.97

Weight (kDa)

5.88

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_N PF07498 919 - 951 9.9e-06 Rho termination factor, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2393
Acc36I ACCTGC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 169
AciI CCGC 3 cut(s) 23, 32, 1769
AclWI GGATC 5 cut(s) 49, 249, 642, 2504, 2657
AcsI RAATTY 5 cut(s) 871, 1225, 1483, 1947, 2710
AcuI CTGAAG 7 cut(s) 828, 1011, 1188, 2244, 2343, 2544, 2801
AcyI GRCGYC 2 cut(s) 5, 2390
AfaI GTAC 4 cut(s) 100, 943, 1249, 1369
AfiI CCNNNNNNNGG 1 cut(s) 1733
AflII CTTAAG 1 cut(s) 2825
AflIII ACRYGT 2 cut(s) 494, 2066
AhdI GACNNNNNGTC 2 cut(s) 1883, 2772
AhlI ACTAGT 3 cut(s) 151, 1040, 1262
AjnI CCWGG 2 cut(s) 34, 2855
AjuI GAANNNNNNNTTGG 4 cut(s) 139, 171, 1180, 1212
Alw21I GWGCWC 2 cut(s) 134, 1338
Alw26I GTCTC 2 cut(s) 201, 450
Alw44I GTGCAC 1 cut(s) 130
AlwI GGATC 5 cut(s) 49, 249, 642, 2504, 2657
AlwNI CAGNNNCTG 3 cut(s) 589, 605, 2321
AoxI GGCC 7 cut(s) 485, 789, 1133, 1143, 1379, 1897, 2015
ApaLI GTGCAC 1 cut(s) 130
ApeKI GCWGC 3 cut(s) 670, 722, 899
ApoI RAATTY 5 cut(s) 871, 1225, 1483, 1947, 2710
ArsI GACNNNNNNTTYG 4 cut(s) 305, 337, 2380, 2412
Asp700I GAANNNNTTC 2 cut(s) 832, 1182
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 251, 803
AsuC2I CCSGG 2 cut(s) 167, 293
AsuHPI GGTGA 7 cut(s) 101, 249, 901, 1292, 1489, 1661, 1748
AsuII TTCGAA 1 cut(s) 2180
AvaII GGWCC 2 cut(s) 251, 803
AxyI CCTNAGG 1 cut(s) 211
BaeGI GKGCMC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 169
BanII GRGCYC 2 cut(s) 1055, 1422
BbsI GAAGAC 2 cut(s) 1292, 2226
Bbv12I GWGCWC 2 cut(s) 134, 1338
BbvI GCAGC 3 cut(s) 682, 709, 911
BccI CCATC 4 cut(s) 114, 1379, 1970, 2211
BciT130I CCWGG 2 cut(s) 36, 2857
BclI TGATCA 2 cut(s) 1014, 1924
BcnI CCSGG 2 cut(s) 167, 293
BcoDI GTCTC 2 cut(s) 201, 450
BcuI ACTAGT 3 cut(s) 151, 1040, 1262
BfmI CTRYAG 7 cut(s) 606, 1350, 1548, 2079, 2313, 2409, 2577
BfrI CTTAAG 1 cut(s) 2825
BfuAI ACCTGC 1 cut(s) 613
BglII AGATCT 1 cut(s) 2485
BisI GCNGC 5 cut(s) 23, 32, 671, 723, 900
BlsI GCNGC 5 cut(s) 24, 33, 672, 724, 901
Bme1390I CCNGG 4 cut(s) 36, 167, 293, 2857
Bme18I GGWCC 2 cut(s) 251, 803
BmeRI GACNNNNNGTC 2 cut(s) 1883, 2772
BmgT120I GGNCC 2 cut(s) 251, 803
BmiI GGNNCC 4 cut(s) 171, 252, 1054, 2718
BmrFI CCNGG 4 cut(s) 36, 167, 293, 2857
BmsI GCATC 4 cut(s) 582, 1202, 1686, 2503
BpiI GAAGAC 2 cut(s) 1292, 2226
BpmI CTGGAG 2 cut(s) 1039, 2709
Bpu14I TTCGAA 1 cut(s) 2180
BpuEI CTTGAG 4 cut(s) 249, 571, 2474, 2685
BpuMI CCSGG 2 cut(s) 167, 293
BsaBI GATNNNNATC 1 cut(s) 1923
BsaHI GRCGYC 2 cut(s) 5, 2390
BsaJI CCNNGG 4 cut(s) 59, 165, 1136, 1995
Bsc4I CCNNNNNNNGG 1 cut(s) 1733
Bse1I ACTGG 2 cut(s) 1470, 2338
Bse21I CCTNAGG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 1923
BseBI CCWGG 2 cut(s) 36, 2857
BseDI CCNNGG 4 cut(s) 59, 165, 1136, 1995
BseGI GGATG 4 cut(s) 1520, 1963, 2371, 2494
BseJI GATNNNNATC 1 cut(s) 1923
BseLI CCNNNNNNNGG 1 cut(s) 1733
BseMII CTCAG 3 cut(s) 225, 675, 2646
BseNI ACTGG 2 cut(s) 1470, 2338
BseRI GAGGAG 2 cut(s) 252, 403
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 3 cut(s) 682, 709, 911
BseYI CCCAGC 1 cut(s) 1856
BsgI GTGCAG 3 cut(s) 1017, 1761, 2069
BshFI GGCC 7 cut(s) 487, 791, 1135, 1145, 1381, 1899, 2017
BshNI GGYRCC 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 134, 1338
BsiSI CCGG 2 cut(s) 167, 293
BslFI GGGAC 3 cut(s) 292, 906, 2648
BslI CCNNNNNNNGG 1 cut(s) 1733
BsmAI GTCTC 2 cut(s) 201, 450
BsmFI GGGAC 3 cut(s) 292, 906, 2648
BsmI GAATGC 2 cut(s) 1969, 2333
BsnI GGCC 7 cut(s) 487, 791, 1135, 1145, 1381, 1899, 2017
Bsp119I TTCGAA 1 cut(s) 2180
Bsp1286I GDGCHC 4 cut(s) 134, 1055, 1338, 1422
Bsp19I CCATGG 1 cut(s) 1136
BspACI CCGC 3 cut(s) 23, 32, 1769
BspANI GGCC 7 cut(s) 487, 791, 1135, 1145, 1381, 1899, 2017
BspCNI CTCAG 3 cut(s) 224, 676, 2647
BspLI GGNNCC 4 cut(s) 171, 252, 1054, 2718
BspMAI CTGCAG 4 cut(s) 610, 2317, 2413, 2581
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 5 cut(s) 49, 249, 642, 2504, 2657
BspT104I TTCGAA 1 cut(s) 2180
BspT107I GGYRCC 1 cut(s) 169
BspTI CTTAAG 1 cut(s) 2825
BsrI ACTGG 2 cut(s) 1470, 2338
BssECI CCNNGG 4 cut(s) 59, 165, 1136, 1995
BssNI GRCGYC 2 cut(s) 5, 2390
BssT1I CCWWGG 3 cut(s) 59, 1136, 1995
Bst2UI CCWGG 2 cut(s) 36, 2857
Bst4CI ACNGT 8 cut(s) 536, 1414, 1885, 2040, 2047, 2252, 2271, 2770
Bst6I CTCTTC 4 cut(s) 453, 1679, 2276, 2372
BstACI GRCGYC 2 cut(s) 5, 2390
BstAFI CTTAAG 1 cut(s) 2825
BstBI TTCGAA 1 cut(s) 2180
BstDEI CTNAG 5 cut(s) 211, 542, 684, 703, 2655
BstDSI CCRYGG 1 cut(s) 1136
BstF5I GGATG 4 cut(s) 1520, 1963, 2371, 2494
BstHHI GCGC 1 cut(s) 358
BstMAI GTCTC 2 cut(s) 201, 450
BstMWI GCNNNNNNNGC 4 cut(s) 28, 31, 1990, 2845
BstNI CCWGG 2 cut(s) 36, 2857
BstNSI RCATGY 5 cut(s) 498, 1495, 1629, 2070, 2234
BstSCI CCNGG 4 cut(s) 34, 165, 291, 2855
BstSFI CTRYAG 7 cut(s) 606, 1350, 1548, 2079, 2313, 2409, 2577
BstSLI GKGCMC 1 cut(s) 134
BstV1I GCAGC 3 cut(s) 682, 709, 911
BstV2I GAAGAC 2 cut(s) 1292, 2226
BstX2I RGATCY 5 cut(s) 241, 634, 2485, 2509, 2662
BstYI RGATCY 5 cut(s) 241, 634, 2485, 2509, 2662
Bsu36I CCTNAGG 1 cut(s) 211
BsuRI GGCC 7 cut(s) 487, 791, 1135, 1145, 1381, 1899, 2017
BtgI CCRYGG 1 cut(s) 1136
BtsCI GGATG 4 cut(s) 1520, 1963, 2371, 2494
BtsI GCAGTG 3 cut(s) 314, 965, 2192
BtsIMutI CAGTG 7 cut(s) 314, 965, 1477, 1905, 2192, 2319, 2331
BveI ACCTGC 1 cut(s) 613
CaiI CAGNNNCTG 3 cut(s) 589, 605, 2321
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 251, 803
CseI GACGC 2 cut(s) 13, 2468
Csp6I GTAC 4 cut(s) 99, 942, 1248, 1368
CspCI CAANNNNNGTGG 2 cut(s) 2224, 2259
CviQI GTAC 4 cut(s) 99, 942, 1248, 1368
DdeI CTNAG 5 cut(s) 211, 542, 684, 703, 2655
DraI TTTAAA 1 cut(s) 1848
DriI GACNNNNNGTC 2 cut(s) 1883, 2772
Eam1104I CTCTTC 4 cut(s) 453, 1679, 2276, 2372
Eam1105I GACNNNNNGTC 2 cut(s) 1883, 2772
EarI CTCTTC 4 cut(s) 453, 1679, 2276, 2372
Eco130I CCWWGG 3 cut(s) 59, 1136, 1995
Eco147I AGGCCT 1 cut(s) 1381
Eco24I GRGCYC 2 cut(s) 1055, 1422
Eco32I GATATC 1 cut(s) 2339
Eco47I GGWCC 2 cut(s) 251, 803
Eco57I CTGAAG 7 cut(s) 828, 1011, 1188, 2244, 2343, 2544, 2801
Eco81I CCTNAGG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 871
EcoRII CCWGG 2 cut(s) 34, 2855
EcoRV GATATC 1 cut(s) 2339
EcoT14I CCWWGG 3 cut(s) 59, 1136, 1995
EcoT22I ATGCAT 2 cut(s) 597, 1493
EcoT38I GRGCYC 2 cut(s) 1055, 1422
ErhI CCWWGG 3 cut(s) 59, 1136, 1995
FalI AAGNNNNNCTT 6 cut(s) 258, 290, 817, 849, 1973, 2005
FaqI GGGAC 3 cut(s) 292, 906, 2648
FbaI TGATCA 2 cut(s) 1014, 1924
Fnu4HI GCNGC 5 cut(s) 23, 32, 671, 723, 900
FokI GGATG 4 cut(s) 1527, 1970, 2378, 2481
FriOI GRGCYC 2 cut(s) 1055, 1422
Fsp4HI GCNGC 5 cut(s) 23, 32, 671, 723, 900
GlaI GCGC 1 cut(s) 357
GluI GCNGC 5 cut(s) 23, 32, 671, 723, 900
GsaI CCCAGC 1 cut(s) 1860
GsuI CTGGAG 2 cut(s) 1039, 2709
HaeIII GGCC 7 cut(s) 487, 791, 1135, 1145, 1381, 1899, 2017
HapII CCGG 2 cut(s) 167, 293
HgaI GACGC 2 cut(s) 13, 2468
HhaI GCGC 1 cut(s) 358
Hin1I GRCGYC 2 cut(s) 5, 2390
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 4 cut(s) 123, 2043, 2394, 2777
HindII GTYRAC 4 cut(s) 123, 2043, 2394, 2777
HindIII AAGCTT 1 cut(s) 2822
HpaII CCGG 2 cut(s) 167, 293
HphI GGTGA 7 cut(s) 101, 249, 901, 1292, 1489, 1661, 1748
Hpy166II GTNNAC 8 cut(s) 41, 101, 123, 132, 924, 2043, 2394, 2777
Hpy8I GTNNAC 8 cut(s) 41, 101, 123, 132, 924, 2043, 2394, 2777
Hpy99I CGWCG 1 cut(s) 2104
HpyAV CCTTC 6 cut(s) 625, 1202, 1613, 2085, 2752, 2776
HpyCH4III ACNGT 8 cut(s) 536, 1414, 1885, 2040, 2047, 2252, 2271, 2770
HpyCH4IV ACGT 4 cut(s) 749, 926, 2102, 2390
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 31, 1990, 2845
HpyF3I CTNAG 5 cut(s) 211, 542, 684, 703, 2655
HpySE526I ACGT 4 cut(s) 749, 926, 2102, 2390
Hsp92I GRCGYC 2 cut(s) 5, 2390
HspAI GCGC 1 cut(s) 356
Ksp22I TGATCA 2 cut(s) 1014, 1924
LmnI GCTCC 3 cut(s) 1058, 1277, 2836
Lsp1109I GCAGC 3 cut(s) 682, 709, 911
LweI GCATC 4 cut(s) 582, 1202, 1686, 2503
MaeII ACGT 4 cut(s) 749, 926, 2102, 2390
MaeIII GTNAC 9 cut(s) 88, 255, 311, 1817, 2034, 2246, 2386, 2535, 2870
MflI RGATCY 5 cut(s) 241, 634, 2485, 2509, 2662
MhlI GDGCHC 4 cut(s) 134, 1055, 1338, 1422
MlyI GAGTC 3 cut(s) 203, 1804, 2287
MmeI TCCRAC 3 cut(s) 1211, 2630, 2756
Mph1103I ATGCAT 2 cut(s) 597, 1493
MroXI GAANNNNTTC 2 cut(s) 832, 1182
MseI TTAA 9 cut(s) 1236, 1580, 1638, 1721, 1794, 1847, 2162, 2418, 2826
MslI CAYNNNNRTG 1 cut(s) 2364
MspA1I CMGCKG 3 cut(s) 902, 1082, 1673
MspCI CTTAAG 1 cut(s) 2825
MspI CCGG 2 cut(s) 167, 293
MspR9I CCNGG 4 cut(s) 36, 167, 293, 2857
Mva1269I GAATGC 2 cut(s) 1969, 2333
MvaI CCWGG 2 cut(s) 36, 2857
MwoI GCNNNNNNNGC 4 cut(s) 28, 31, 1990, 2845
NciI CCSGG 2 cut(s) 167, 293
NcoI CCATGG 1 cut(s) 1136
NlaIV GGNNCC 4 cut(s) 171, 252, 1054, 2718
NmuCI GTSAC 6 cut(s) 88, 255, 311, 2386, 2535, 2870
NsiI ATGCAT 2 cut(s) 597, 1493
NspI RCATGY 5 cut(s) 498, 1495, 1629, 2070, 2234
NspV TTCGAA 1 cut(s) 2180
PaeI GCATGC 1 cut(s) 1495
PceI AGGCCT 1 cut(s) 1381
PciI ACATGT 2 cut(s) 494, 2066
PctI GAATGC 2 cut(s) 1969, 2333
PdmI GAANNNNTTC 2 cut(s) 832, 1182
PflFI GACNNNGTC 1 cut(s) 801
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 5 cut(s) 24, 33, 672, 724, 901
PleI GAGTC 3 cut(s) 202, 1804, 2287
PpsI GAGTC 3 cut(s) 202, 1804, 2287
PpuMI RGGWCCY 1 cut(s) 803
PscI ACATGT 2 cut(s) 494, 2066
Psp5II RGGWCCY 1 cut(s) 803
Psp6I CCWGG 2 cut(s) 34, 2855
PspFI CCCAGC 1 cut(s) 1856
PspGI CCWGG 2 cut(s) 34, 2855
PspN4I GGNNCC 4 cut(s) 171, 252, 1054, 2718
PspPI GGNCC 2 cut(s) 251, 803
PspPPI RGGWCCY 1 cut(s) 803
PstI CTGCAG 4 cut(s) 610, 2317, 2413, 2581
PstNI CAGNNNCTG 3 cut(s) 589, 605, 2321
PsuI RGATCY 5 cut(s) 241, 634, 2485, 2509, 2662
PsyI GACNNNGTC 1 cut(s) 801
PvuII CAGCTG 3 cut(s) 902, 1082, 1673
RsaI GTAC 4 cut(s) 100, 943, 1249, 1369
RsaNI GTAC 4 cut(s) 99, 942, 1248, 1368
RseI CAYNNNNRTG 1 cut(s) 2364
SaqAI TTAA 9 cut(s) 1236, 1580, 1638, 1721, 1794, 1847, 2162, 2418, 2826
SatI GCNGC 5 cut(s) 23, 32, 671, 723, 900
Sau96I GGNCC 2 cut(s) 251, 803
SchI GAGTC 3 cut(s) 203, 1804, 2287
ScrFI CCNGG 4 cut(s) 36, 167, 293, 2857
SduI GDGCHC 4 cut(s) 134, 1055, 1338, 1422
SfaNI GCATC 4 cut(s) 582, 1202, 1686, 2503
SfcI CTRYAG 7 cut(s) 606, 1350, 1548, 2079, 2313, 2409, 2577
SfuI TTCGAA 1 cut(s) 2180
SinI GGWCC 2 cut(s) 251, 803
SmiMI CAYNNNNRTG 1 cut(s) 2364
SmlI CTYRAG 5 cut(s) 264, 550, 2489, 2700, 2825
SmoI CTYRAG 5 cut(s) 264, 550, 2489, 2700, 2825
SpeI ACTAGT 3 cut(s) 151, 1040, 1262
SphI GCATGC 1 cut(s) 1495
SseBI AGGCCT 1 cut(s) 1381
SsiI CCGC 3 cut(s) 23, 32, 1769
SspI AATATT 3 cut(s) 574, 1256, 2518
StuI AGGCCT 1 cut(s) 1381
StyD4I CCNGG 4 cut(s) 34, 165, 291, 2855
StyI CCWWGG 3 cut(s) 59, 1136, 1995
TaaI ACNGT 8 cut(s) 536, 1414, 1885, 2040, 2047, 2252, 2271, 2770
TaiI ACGT 4 cut(s) 752, 929, 2105, 2393
TaqI TCGA 5 cut(s) 429, 1568, 1876, 2180, 2348
TaqII GACCGA 2 cut(s) 107, 422
TatI WGTACW 3 cut(s) 98, 941, 1247
TauI GCSGC 2 cut(s) 25, 34
Tru1I TTAA 9 cut(s) 1236, 1580, 1638, 1721, 1794, 1847, 2162, 2418, 2826
Tru9I TTAA 9 cut(s) 1236, 1580, 1638, 1721, 1794, 1847, 2162, 2418, 2826
TscAI CASTG 7 cut(s) 314, 965, 1477, 1912, 2192, 2326, 2338
TseFI GTSAC 6 cut(s) 88, 255, 311, 2386, 2535, 2870
TseI GCWGC 3 cut(s) 670, 722, 899
Tsp45I GTSAC 6 cut(s) 88, 255, 311, 2386, 2535, 2870
TspGWI ACGGA 4 cut(s) 36, 76, 243, 2709
TspRI CASTG 7 cut(s) 314, 965, 1477, 1912, 2192, 2326, 2338
Tth111I GACNNNGTC 1 cut(s) 801
Vha464I CTTAAG 1 cut(s) 2825
VneI GTGCAC 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 251, 803
XapI RAATTY 5 cut(s) 871, 1225, 1483, 1947, 2710
XceI RCATGY 5 cut(s) 498, 1495, 1629, 2070, 2234
XmnI GAANNNNTTC 2 cut(s) 832, 1182
ZraI GACGTC 1 cut(s) 2391
Zsp2I ATGCAT 2 cut(s) 597, 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.