AT2G41750

DTW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013032
Physical Location & Seq
Reverse (-)
17421555 .. 17422747
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41750.1

Sequence Viewer

Length: 795 bp
ATGTTGGAATGCTCGCGTGACAGAGCAGTGACGATGGAGGACGAGCAAGACGCGCATCATCGCCGGCAGATCTGCGACAACTGCGATCGCCCAAATGCGATTTGTCTCTGCCACGTCTTACCAGCGGATCTAATTCCGACGAATACAGAAATCATCATCCTCCACCATCCACACGAGTCACGCCACAAGCTCAACACCACTCCTCTCCTTACCAAATCCTTACTAAACGTCACCAGAATCCCCGCCCGCCGTCTCCTCCGCCGTCACATCTCCACCGCCGGAGGAACCGCACTCCCAGCACCGCCAACAATCTACCTCTTCCCTTCTTCTCCTTCCTCTCCCGCCGTCACTATATCCGAATTCAAATCCCTAAACCTCTTAAACCATCGTGAGATCTCAAATCCCCCGCCGCTGAGACTAATCGTATTCGACGCGACGTGGAAACACGCGAAGGAGATGGTCAAAGCTAGCGAGGTGGTGTTAAGAGAAGCAGGAGCGGTTAGAGTGTGTTTGGATACGGAAATAGACGCATCAGTGAGTGGAGGAACCATCTACGATTCAGAGCTTGTGCTAAGGAAGGAACCATTCGGAGGATGTGTAACTACGGCGGAGGCTGTGGCACGGTGCTTAGGAGCTATTGAACCTGACGGTGAAGAAATAGAGAGGAAGCTGATTAGTGTTTTGAAAGAGATGGTTAGATTTCAATCTAAGTACTTGAAGCCTATGAAACCAAGACCTAAGTTATTGAAGAAGAGATTTCAGAATCAGCAACCACTTGAACAAGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

264

Amino Acids

29.7

Weight (kDa)

8.11

Isoelectric Point (pI)

64.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DTW PF03942 22 - 235 5e-37 DTW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41750
fragaria_vesca FvH4_6g23860
prunus_persica Prupe.7G059600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0482541
rosa_laevigata RLG00000023346
rosa_multiflora Rmu_sc0002969.1_g000012 Rmu_sc0005613.1_g000004
rosa_roxburghii Rroxscaffold_6G00399180 Rroxscaffold_6G00399300
rosa_rugosa Rorug03G0196800
rosa_samantha Rh3AG248300 Rh3BG283300 Rh3CG279900 Rh3DG276200 Rh3DG276300 Rh4BG263400
rosa_wichuraiana Rw0G013130 Rw3G022360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 497
AccII CGCG 4 cut(s) 16, 53, 434, 449
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 1 cut(s) 359
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 7 cut(s) 364, 641, 685, 704, 718, 748, 779
AjiI CACGTC 2 cut(s) 115, 438
AluBI AGCT 5 cut(s) 190, 467, 565, 635, 670
AluI AGCT 5 cut(s) 190, 467, 565, 635, 670
Alw26I GTCTC 3 cut(s) 110, 257, 409
AlwI GGATC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 359
AsiSI GCGATCGC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 223, 662
AsuNHI GCTAGC 1 cut(s) 467
BauI CACGAG 1 cut(s) 173
BccI CCATC 6 cut(s) 28, 174, 393, 451, 557, 685
BceAI ACGGC 4 cut(s) 234, 246, 329, 621
BciVI GTATCC 1 cut(s) 508
BcoDI GTCTC 3 cut(s) 110, 257, 409
BfaI CTAG 1 cut(s) 468
BfuI GTATCC 1 cut(s) 508
BglII AGATCT 2 cut(s) 69, 393
BisI GCNGC 1 cut(s) 410
BlsI GCNGC 1 cut(s) 411
BmcAI AGTACT 1 cut(s) 713
BmgBI CACGTC 2 cut(s) 115, 438
BmiI GGNNCC 3 cut(s) 286, 547, 582
BmsI GCATC 2 cut(s) 64, 539
BmtI GCTAGC 1 cut(s) 471
Bpu10I CCTNAGC 2 cut(s) 572, 628
BsaBI GATNNNNATC 1 cut(s) 703
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse118I RCCGGY 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 703
BseGI GGATG 3 cut(s) 156, 166, 599
BseJI GATNNNNATC 1 cut(s) 703
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMII CTCAG 1 cut(s) 404
BseRI GAGGAG 2 cut(s) 192, 245
BseYI CCCAGC 1 cut(s) 295
Bsh1236I CGCG 4 cut(s) 16, 53, 434, 449
Bsh1285I CGRYCG 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 2 cut(s) 64, 279
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 3 cut(s) 110, 257, 409
BsmBI CGTCTC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 14
Bsp143I GATC 4 cut(s) 69, 85, 127, 393
BspCNI CTCAG 1 cut(s) 405
BspFNI CGCG 4 cut(s) 16, 53, 434, 449
BspLI GGNNCC 3 cut(s) 286, 547, 582
BspOI GCTAGC 1 cut(s) 471
BspPI GGATC 1 cut(s) 135
BsrBI CCGCTC 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 63
BssMI GATC 4 cut(s) 69, 85, 127, 393
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 624, 650
Bst6I CTCTTC 2 cut(s) 323, 746
BstC8I GCNNGC 4 cut(s) 14, 65, 247, 469
BstDEI CTNAG 5 cut(s) 413, 572, 628, 708, 738
BstF5I GGATG 3 cut(s) 156, 166, 599
BstFNI CGCG 4 cut(s) 16, 53, 434, 449
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 4 cut(s) 72, 88, 130, 396
BstMAI GTCTC 3 cut(s) 110, 257, 409
BstMBI GATC 4 cut(s) 69, 85, 127, 393
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 3 cut(s) 52, 81, 296
BstUI CGCG 4 cut(s) 16, 53, 434, 449
BstX2I RGATCY 3 cut(s) 69, 127, 393
BstYI RGATCY 3 cut(s) 69, 127, 393
BsuI GTATCC 1 cut(s) 508
BtgZI GCGATG 1 cut(s) 44
BtrI CACGTC 2 cut(s) 115, 438
BtsCI GGATG 3 cut(s) 156, 166, 599
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 540
Cac8I GCNNGC 4 cut(s) 14, 65, 247, 469
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 63
CseI GACGC 3 cut(s) 59, 440, 536
Csp6I GTAC 1 cut(s) 712
CviJI RGCY 7 cut(s) 190, 467, 565, 614, 635, 670, 721
CviKI_1 RGCY 7 cut(s) 190, 467, 565, 614, 635, 670, 721
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 5 cut(s) 413, 572, 628, 708, 738
DpnI GATC 4 cut(s) 71, 87, 129, 395
DpnII GATC 4 cut(s) 69, 85, 127, 393
Eam1104I CTCTTC 2 cut(s) 323, 746
EarI CTCTTC 2 cut(s) 323, 746
EciI GGCGGA 2 cut(s) 248, 623
EcoRI GAATTC 1 cut(s) 359
Esp3I CGTCTC 1 cut(s) 257
FaiI YATR 2 cut(s) 353, 725
FauI CCCGC 4 cut(s) 250, 254, 349, 414
Fnu4HI GCNGC 1 cut(s) 410
FokI GGATG 3 cut(s) 143, 153, 606
Fsp4HI GCNGC 1 cut(s) 410
FspBI CTAG 1 cut(s) 468
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 410
GsaI CCCAGC 1 cut(s) 299
HapII CCGG 2 cut(s) 64, 279
HgaI GACGC 3 cut(s) 59, 440, 536
HhaI GCGC 1 cut(s) 55
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 4 cut(s) 176, 237, 557, 763
HpaII CCGG 2 cut(s) 64, 279
HphI GGTGA 2 cut(s) 223, 662
Hpy188I TCNGA 5 cut(s) 138, 358, 562, 590, 762
Hpy188III TCNNGA 1 cut(s) 389
Hpy99I CGWCG 3 cut(s) 142, 434, 439
HpyAV CCTTC 4 cut(s) 333, 342, 445, 571
HpyCH4III ACNGT 2 cut(s) 624, 650
HpyCH4IV ACGT 3 cut(s) 114, 228, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 81, 296
HpyF3I CTNAG 5 cut(s) 413, 572, 628, 708, 738
HpySE526I ACGT 3 cut(s) 114, 228, 437
HspAI GCGC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
Kzo9I GATC 4 cut(s) 69, 85, 127, 393
LmnI GCTCC 2 cut(s) 494, 632
LpnPI CCDG 7 cut(s) 77, 135, 247, 292, 309, 477, 657
LweI GCATC 2 cut(s) 64, 539
MaeI CTAG 1 cut(s) 468
MaeII ACGT 3 cut(s) 114, 228, 437
MaeIII GTNAC 7 cut(s) 17, 28, 177, 229, 263, 346, 598
MalI GATC 4 cut(s) 71, 87, 129, 395
MbiI CCGCTC 1 cut(s) 497
MboI GATC 4 cut(s) 69, 85, 127, 393
MboII GAAGA 5 cut(s) 310, 318, 665, 760, 763
MflI RGATCY 3 cut(s) 69, 127, 393
MluCI AATT 2 cut(s) 132, 359
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 63
MseI TTAA 2 cut(s) 380, 482
MspA1I CMGCKG 2 cut(s) 125, 412
MspI CCGG 2 cut(s) 64, 279
Mva1269I GAATGC 1 cut(s) 14
MvnI CGCG 4 cut(s) 16, 53, 434, 449
MwoI GCNNNNNNNGC 3 cut(s) 52, 81, 296
NaeI GCCGGC 1 cut(s) 65
NdeII GATC 4 cut(s) 69, 85, 127, 393
NgoMIV GCCGGC 1 cut(s) 63
NheI GCTAGC 1 cut(s) 467
NlaIV GGNNCC 3 cut(s) 286, 547, 582
NmuCI GTSAC 6 cut(s) 17, 28, 177, 229, 263, 346
PctI GAATGC 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 65
PfeI GAWTC 3 cut(s) 237, 557, 763
PkrI GCNGC 1 cut(s) 411
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 295
PspN4I GGNNCC 3 cut(s) 286, 547, 582
PsuI RGATCY 3 cut(s) 69, 127, 393
PvuI CGATCG 1 cut(s) 88
RgaI GCGATCGC 1 cut(s) 88
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
SaqAI TTAA 2 cut(s) 380, 482
SatI GCNGC 1 cut(s) 410
Sau3AI GATC 4 cut(s) 69, 85, 127, 393
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 1 cut(s) 185
SfaAI GCGATCGC 1 cut(s) 88
SfaNI GCATC 2 cut(s) 64, 539
SgfI GCGATCGC 1 cut(s) 88
Sse9I AATT 2 cut(s) 132, 359
SspMI CTAG 1 cut(s) 468
TaaI ACNGT 2 cut(s) 624, 650
TaiI ACGT 3 cut(s) 117, 231, 440
TaqI TCGA 1 cut(s) 429
TasI AATT 2 cut(s) 132, 359
TatI WGTACW 1 cut(s) 711
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 3 cut(s) 237, 557, 763
Tru1I TTAA 2 cut(s) 380, 482
Tru9I TTAA 2 cut(s) 380, 482
TscAI CASTG 2 cut(s) 33, 540
TseFI GTSAC 6 cut(s) 17, 28, 177, 229, 263, 346
Tsp45I GTSAC 6 cut(s) 17, 28, 177, 229, 263, 346
TspDTI ATGAA 1 cut(s) 740
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 2 cut(s) 33, 540
XapI RAATTY 1 cut(s) 359
XspI CTAG 1 cut(s) 468
ZrmI AGTACT 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.