FvH4_6g23860

DTW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013032
Physical Location & Seq
Forward (+)
17925783 .. 17926550
768 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23860.t1

Sequence Viewer

Length: 768 bp
ATGGAAGCCGAAGACGACGACTACTTCGCCTCGTCGCCGCCGCGGAGAGCGAGGGCGATCTGCGGCAAGTGCAGCCGGCCCGGCCCAGTCTGCCTCTGCCGTTCTCTCCCGGCCCAGCCCATCCCAACCCAAACGCAAATCATAATCCTCCACCACCCTCACGAGGCGCAGCACAAGCTCTCCACAACCCCAATCCTCACAAAATGCCTGGCCAACTCCACCACAATAGTCAGCCGCCGCCTCAAGCCAGGCCTCTCCCCGCTCCTCGACCAATCACCCTCCGCCGTCTACCTCTTCCCGCCCTCCAAATCCTCACCGTCCTTGAGCTTATCCGATCTCCGGACCCCACCGGCGGTGCTCATAGCCTTCGACGCCACGTGGCGACACGCGAAGGAGATGGTGAAGGCGAGCGAGGGGTTTCTGTCGGGATTTGCAAGGAGGGTGAGTTTGGAGGTGGATGAGGGGGTGGGGGGAGGGAGTATATACGAGTCGGAGTTGATTCTGAGGAAGGAGCCGTGTGGTGGGTGCGTGAGTACTATGGAGGCAGTGGCGAGGACACTTAGGGTGATTGAGCCGGATGGGGTGGAGATTGAGAGCAAGCTTATTGGGGTTTTGAGAGACATGGTGGCGCTGCAGGCGGGGTTTCTTAAGCCGGTCAAGCACAGGGTGAAGATGTTGAAGAAAGGGAAGGAGGAACAGAGGCTCAAGGATGAGACTCATGAGAGTAGTGAGAGTTTCCCGATAGTTCGTCAAGGTCAACGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

256

Amino Acids

27.97

Weight (kDa)

8.97

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DTW PF03942 18 - 212 1.6e-37 DTW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41750
fragaria_vesca FvH4_6g23860
prunus_persica Prupe.7G059600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0482541
rosa_laevigata RLG00000023346
rosa_multiflora Rmu_sc0002969.1_g000012 Rmu_sc0005613.1_g000004
rosa_roxburghii Rroxscaffold_6G00399180 Rroxscaffold_6G00399300
rosa_rugosa Rorug03G0196800
rosa_samantha Rh3AG248300 Rh3BG283300 Rh3CG279900 Rh3DG276200 Rh3DG276300 Rh4BG263400
rosa_wichuraiana Rw0G013130 Rw3G022360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 262
AccI GTMKAC 1 cut(s) 288
AccII CGCG 2 cut(s) 43, 389
AccIII TCCGGA 1 cut(s) 339
AcoI YGGCCR 2 cut(s) 210, 761
AcvI CACGTG 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 372
AdeI CACNNNGTG 1 cut(s) 667
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 4 cut(s) 163, 339, 352, 521
AflII CTTAAG 1 cut(s) 647
AgsI TTSAA 1 cut(s) 679
AjnI CCWGG 2 cut(s) 207, 247
AluBI AGCT 3 cut(s) 178, 327, 601
AluI AGCT 3 cut(s) 178, 327, 601
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 2 cut(s) 612, 707
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 6 cut(s) 77, 82, 111, 210, 250, 761
ApeKI GCWGC 3 cut(s) 72, 169, 631
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspLEI GCGC 2 cut(s) 169, 631
AspS9I GGNCC 4 cut(s) 78, 83, 112, 342
AsuC2I CCSGG 2 cut(s) 81, 110
AsuHPI GGTGA 6 cut(s) 267, 306, 412, 454, 577, 679
AvaII GGWCC 1 cut(s) 342
BalI TGGCCA 1 cut(s) 212
BauI CACGAG 1 cut(s) 161
BbrPI CACGTG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 84, 181, 618
BccI CCATC 3 cut(s) 128, 391, 572
BceAI ACGGC 3 cut(s) 84, 269, 499
BciT130I CCWGG 2 cut(s) 209, 249
BcnI CCSGG 2 cut(s) 81, 110
BcoDI GTCTC 2 cut(s) 612, 707
BfmI CTRYAG 1 cut(s) 632
BfoI RGCGCY 1 cut(s) 632
BfrI CTTAAG 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 81
BisI GCNGC 8 cut(s) 38, 41, 64, 73, 170, 235, 238, 632
BlsI GCNGC 8 cut(s) 39, 42, 65, 74, 171, 236, 239, 633
BmcAI AGTACT 1 cut(s) 535
Bme1390I CCNGG 4 cut(s) 81, 110, 209, 249
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 4 cut(s) 78, 83, 112, 342
BmiI GGNNCC 2 cut(s) 344, 513
BmrFI CCNGG 4 cut(s) 81, 110, 209, 249
BmrI ACTGGG 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 18
BpuEI CTTGAG 3 cut(s) 227, 343, 689
BpuMI CCSGG 2 cut(s) 81, 110
BsaAI YACGTR 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 430, 460
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 339, 352, 521
Bse118I RCCGGY 3 cut(s) 75, 349, 652
Bse1I ACTGG 1 cut(s) 86
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 2 cut(s) 209, 249
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 4 cut(s) 120, 463, 583, 715
BseLI CCNNNNNNNGG 4 cut(s) 163, 339, 352, 521
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 3 cut(s) 84, 181, 618
BseYI CCCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 43, 389
BshFI GGCC 6 cut(s) 79, 84, 113, 212, 252, 763
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 7 cut(s) 76, 81, 110, 340, 350, 575, 653
BslI CCNNNNNNNGG 4 cut(s) 163, 339, 352, 521
BsmAI GTCTC 2 cut(s) 612, 707
BsnI GGCC 6 cut(s) 79, 84, 113, 212, 252, 763
Bsp1286I GDGCHC 1 cut(s) 360
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 57, 334
BspANI GGCC 6 cut(s) 79, 84, 113, 212, 252, 763
BspCNI CTCAG 1 cut(s) 495
BspEI TCCGGA 1 cut(s) 339
BspFNI CGCG 2 cut(s) 43, 389
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 2 cut(s) 344, 513
BspMAI CTGCAG 1 cut(s) 636
BspTI CTTAAG 1 cut(s) 647
BsrBI CCGCTC 1 cut(s) 262
BsrFI RCCGGY 3 cut(s) 75, 349, 652
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 3 cut(s) 75, 349, 652
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 2 cut(s) 57, 334
BssNI GRCGYC 1 cut(s) 372
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 2 cut(s) 209, 249
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 372
BstAFI CTTAAG 1 cut(s) 647
BstBAI YACGTR 1 cut(s) 378
BstC8I GCNNGC 4 cut(s) 77, 409, 599, 636
BstDEI CTNAG 2 cut(s) 503, 560
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 4 cut(s) 120, 463, 583, 715
BstFNI CGCG 2 cut(s) 43, 389
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 2 cut(s) 169, 631
BstKTI GATC 2 cut(s) 60, 337
BstMAI GTCTC 2 cut(s) 612, 707
BstMBI GATC 2 cut(s) 57, 334
BstMWI GCNNNNNNNGC 8 cut(s) 69, 72, 81, 90, 175, 371, 635, 658
BstNI CCWGG 2 cut(s) 209, 249
BstSCI CCNGG 4 cut(s) 79, 108, 207, 247
BstSFI CTRYAG 1 cut(s) 632
BstUI CGCG 2 cut(s) 43, 389
BstV1I GCAGC 3 cut(s) 84, 181, 618
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 6 cut(s) 79, 84, 113, 212, 252, 763
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 4 cut(s) 120, 463, 583, 715
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 4 cut(s) 77, 409, 599, 636
CciI TCATGA 1 cut(s) 718
CfoI GCGC 2 cut(s) 169, 631
Cfr10I RCCGGY 3 cut(s) 75, 349, 652
Cfr13I GGNCC 4 cut(s) 78, 83, 112, 342
Cfr42I CCGCGG 1 cut(s) 44
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 534
CviAII CATG 2 cut(s) 622, 719
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 2 cut(s) 503, 560
DpnI GATC 2 cut(s) 59, 336
DpnII GATC 2 cut(s) 57, 334
DraIII CACNNNGTG 1 cut(s) 667
EaeI YGGCCR 2 cut(s) 210, 761
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
EciI GGCGGA 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 342
Eco72I CACGTG 1 cut(s) 378
EcoRII CCWGG 2 cut(s) 207, 247
FaeI CATG 2 cut(s) 625, 722
FaiI YATR 8 cut(s) 143, 362, 482, 484, 539, 623, 720, 766
FatI CATG 2 cut(s) 621, 718
FauI CCCGC 3 cut(s) 267, 306, 631
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 8 cut(s) 38, 41, 64, 73, 170, 235, 238, 632
FokI GGATG 4 cut(s) 107, 470, 590, 722
Fsp4HI GCNGC 8 cut(s) 38, 41, 64, 73, 170, 235, 238, 632
GlaI GCGC 2 cut(s) 168, 630
GluI GCNGC 8 cut(s) 38, 41, 64, 73, 170, 235, 238, 632
GsaI CCCAGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 6 cut(s) 79, 84, 113, 212, 252, 763
HapII CCGG 7 cut(s) 76, 81, 110, 340, 350, 575, 653
HgaI GACGC 1 cut(s) 380
HhaI GCGC 2 cut(s) 169, 631
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 2 cut(s) 625, 722
Hin6I GCGC 2 cut(s) 167, 629
HinP1I GCGC 2 cut(s) 167, 629
HincII GTYRAC 1 cut(s) 758
HindII GTYRAC 1 cut(s) 758
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 3 cut(s) 488, 499, 715
HpaII CCGG 7 cut(s) 76, 81, 110, 340, 350, 575, 653
HphI GGTGA 6 cut(s) 267, 306, 412, 454, 577, 679
Hpy166II GTNNAC 2 cut(s) 289, 758
Hpy188I TCNGA 3 cut(s) 334, 493, 504
Hpy188III TCNNGA 5 cut(s) 161, 340, 426, 719, 739
Hpy8I GTNNAC 2 cut(s) 289, 758
Hpy99I CGWCG 3 cut(s) 20, 37, 374
HpyAV CCTTC 5 cut(s) 376, 385, 397, 502, 682
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 3 cut(s) 72, 434, 634
HpyF10VI GCNNNNNNNGC 8 cut(s) 69, 72, 81, 90, 175, 371, 635, 658
HpyF3I CTNAG 2 cut(s) 503, 560
HpySE526I ACGT 1 cut(s) 377
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 2 cut(s) 625, 722
HspAI GCGC 2 cut(s) 167, 629
Kpn2I TCCGGA 1 cut(s) 339
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
KspI CCGCGG 1 cut(s) 44
Kzo9I GATC 2 cut(s) 57, 334
LmnI GCTCC 2 cut(s) 267, 511
Lsp1109I GCAGC 3 cut(s) 84, 181, 618
MaeII ACGT 1 cut(s) 377
MalI GATC 2 cut(s) 59, 336
MbiI CCGCTC 1 cut(s) 262
MboI GATC 2 cut(s) 57, 334
MboII GAAGA 4 cut(s) 23, 286, 682, 691
MhlI GDGCHC 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 212
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 2 cut(s) 497, 709
MmeI TCCRAC 1 cut(s) 471
Mox20I TGGCCA 1 cut(s) 212
MroI TCCGGA 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 75
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 43
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 7 cut(s) 76, 81, 110, 340, 350, 575, 653
MspR9I CCNGG 4 cut(s) 81, 110, 209, 249
MvaI CCWGG 2 cut(s) 209, 249
MvnI CGCG 2 cut(s) 43, 389
MwoI GCNNNNNNNGC 8 cut(s) 69, 72, 81, 90, 175, 371, 635, 658
NaeI GCCGGC 1 cut(s) 77
NciI CCSGG 2 cut(s) 81, 110
NdeII GATC 2 cut(s) 57, 334
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 2 cut(s) 625, 722
NlaIV GGNNCC 2 cut(s) 344, 513
PagI TCATGA 1 cut(s) 718
PceI AGGCCT 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 499
PkrI GCNGC 8 cut(s) 39, 42, 65, 74, 171, 236, 239, 633
PleI GAGTC 2 cut(s) 496, 709
PmaCI CACGTG 1 cut(s) 378
PmlI CACGTG 1 cut(s) 378
PpsI GAGTC 2 cut(s) 496, 709
Ppu21I YACGTR 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 207, 247
PspCI CACGTG 1 cut(s) 378
PspFI CCCAGC 1 cut(s) 114
PspGI CCWGG 2 cut(s) 207, 247
PspN4I GGNNCC 2 cut(s) 344, 513
PspPI GGNCC 4 cut(s) 78, 83, 112, 342
PstI CTGCAG 1 cut(s) 636
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
SacII CCGCGG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 8 cut(s) 38, 41, 64, 73, 170, 235, 238, 632
Sau3AI GATC 2 cut(s) 57, 334
Sau96I GGNCC 4 cut(s) 78, 83, 112, 342
ScaI AGTACT 1 cut(s) 535
SchI GAGTC 2 cut(s) 497, 709
ScrFI CCNGG 4 cut(s) 81, 110, 209, 249
SduI GDGCHC 1 cut(s) 360
SetI ASST 7 cut(s) 180, 294, 329, 380, 456, 603, 757
SfcI CTRYAG 1 cut(s) 632
Sfr303I CCGCGG 1 cut(s) 44
SgrAI CRCCGGYG 1 cut(s) 349
SgrBI CCGCGG 1 cut(s) 44
SinI GGWCC 1 cut(s) 342
SmlI CTYRAG 4 cut(s) 242, 322, 647, 704
SmoI CTYRAG 4 cut(s) 242, 322, 647, 704
SseBI AGGCCT 1 cut(s) 252
StuI AGGCCT 1 cut(s) 252
StyD4I CCNGG 4 cut(s) 79, 108, 207, 247
TaaI ACNGT 1 cut(s) 318
TaiI ACGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 267, 369
TatI WGTACW 1 cut(s) 533
TauI GCSGC 5 cut(s) 40, 43, 66, 237, 240
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 1 cut(s) 552
TseI GCWGC 3 cut(s) 72, 169, 631
TspRI CASTG 1 cut(s) 552
Vha464I CTTAAG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.