Rh3DG276200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013032
Physical Location & Seq
Forward (+)
27957150 .. 27957419
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG276200.1

Sequence Viewer

Length: 270 bp
ATGCCTGGCCAACTCGACCGCCATCGTCAGCCGCCGCCTCAAGCCGGGCCTGTCCCCGCTCCTCGACCAATCACCTTCCGCCATCTACCTCTTCCCGCCCTCGAAATCCTCGCCGTCCGTCAGCTTATCCCGTCTCCGGATCCCCGACCAGTCGGCGCCGGTGGTGGTCGTAGCTTTCGACGCGACGTGGAAGCACGCGAAGGAGATGGTGAGGGCGAGCGAGGGGTTCCTGTCGAAATTCGCGAGGAGGGTGAGTTTGGATGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.6

Weight (kDa)

6.09

Isoelectric Point (pI)

81.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41750
fragaria_vesca FvH4_6g23860
prunus_persica Prupe.7G059600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0482541
rosa_laevigata RLG00000023346
rosa_multiflora Rmu_sc0002969.1_g000012 Rmu_sc0005613.1_g000004
rosa_roxburghii Rroxscaffold_6G00399180 Rroxscaffold_6G00399300
rosa_rugosa Rorug03G0196800
rosa_samantha Rh3AG248300 Rh3BG283300 Rh3CG279900 Rh3DG276200 Rh3DG276300 Rh4BG263400
rosa_wichuraiana Rw0G013130 Rw3G022360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 59
AccII CGCG 3 cut(s) 183, 198, 243
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 6 cut(s) 19, 32, 35, 57, 79, 96
AclWI GGATC 2 cut(s) 134, 147
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 44, 136
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 2 cut(s) 124, 174
AluI AGCT 2 cut(s) 124, 174
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 134, 147
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 2 cut(s) 7, 47
ApoI RAATTY 1 cut(s) 237
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 3 cut(s) 64, 221, 263
BalI TGGCCA 1 cut(s) 9
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 155
BccI CCATC 3 cut(s) 30, 90, 200
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 6
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 159
BisI GCNGC 2 cut(s) 32, 35
BlsI GCNGC 2 cut(s) 33, 36
Bme1390I CCNGG 2 cut(s) 6, 46
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 3 cut(s) 141, 157, 228
BmrFI CCNGG 2 cut(s) 6, 46
BpuEI CTTGAG 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 136
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 136
BseBI CCWGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 2 cut(s) 44, 136
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 2 cut(s) 51, 260
Bsh1236I CGCG 3 cut(s) 183, 198, 243
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 2 cut(s) 9, 49
BshNI GGYRCC 1 cut(s) 155
BsiEI CGRYCG 1 cut(s) 19
BsiSI CCGG 3 cut(s) 45, 137, 159
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 44, 136
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 2 cut(s) 9, 49
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 139
Bsp68I TCGCGA 1 cut(s) 243
BspACI CCGC 6 cut(s) 19, 32, 35, 57, 79, 96
BspANI GGCC 2 cut(s) 9, 49
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 3 cut(s) 183, 198, 243
BspLI GGNNCC 3 cut(s) 141, 157, 228
BspPI GGATC 2 cut(s) 134, 147
BspT107I GGYRCC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 158
BssMI GATC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 196, 218
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 3 cut(s) 183, 198, 243
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 139
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 2 cut(s) 4, 44
BstUI CGCG 3 cut(s) 183, 198, 243
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 2 cut(s) 9, 49
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 266
BtuMI TCGCGA 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 196, 218
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 189
CviJI RGCY 6 cut(s) 9, 31, 44, 49, 124, 174
CviKI_1 RGCY 6 cut(s) 9, 31, 44, 49, 124, 174
DinI GGCGCC 1 cut(s) 157
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 4
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 138
FaqI GGGAC 1 cut(s) 38
FauI CCCGC 2 cut(s) 64, 103
Fnu4HI GCNGC 2 cut(s) 32, 35
Fsp4HI GCNGC 2 cut(s) 32, 35
GlaI GCGC 1 cut(s) 157
GluI GCNGC 2 cut(s) 32, 35
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 9, 49
HapII CCGG 3 cut(s) 45, 137, 159
HgaI GACGC 1 cut(s) 189
HhaI GCGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HpaII CCGG 3 cut(s) 45, 137, 159
HphI GGTGA 3 cut(s) 64, 221, 263
Hpy188III TCNNGA 2 cut(s) 137, 242
Hpy99I CGWCG 2 cut(s) 183, 188
HpyAV CCTTC 2 cut(s) 85, 194
HpyCH4IV ACGT 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 156
HspAI GCGC 1 cut(s) 156
KasI GGCGCC 1 cut(s) 155
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 18, 58, 63, 150, 162, 172, 243
MaeII ACGT 1 cut(s) 186
MalI GATC 1 cut(s) 141
MbiI CCGCTC 1 cut(s) 59
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 83
MflI RGATCY 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 9
Mly113I GGCGCC 1 cut(s) 156
MnlI CCTC 9 cut(s) 48, 72, 99, 110, 119, 205, 215, 238, 241
Mox20I TGGCCA 1 cut(s) 9
MroI TCCGGA 1 cut(s) 136
MscI TGGCCA 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 9
MspI CCGG 3 cut(s) 45, 137, 159
MspR9I CCNGG 2 cut(s) 6, 46
MvaI CCWGG 1 cut(s) 6
MvnI CGCG 3 cut(s) 183, 198, 243
MwoI GCNNNNNNNGC 1 cut(s) 180
NarI GGCGCC 1 cut(s) 156
NciI CCSGG 1 cut(s) 46
NdeII GATC 1 cut(s) 139
NlaIV GGNNCC 3 cut(s) 141, 157, 228
NruI TCGCGA 1 cut(s) 243
PcsI WCGNNNNNNNCGW 2 cut(s) 175, 240
PkrI GCNGC 2 cut(s) 33, 36
PluTI GGCGCC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 3 cut(s) 141, 157, 228
PspPI GGNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 139
RruI TCGCGA 1 cut(s) 243
SatI GCNGC 2 cut(s) 32, 35
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 6, 46
SetI ASST 5 cut(s) 77, 91, 126, 176, 189
SfoI GGCGCC 1 cut(s) 157
SgrAI CRCCGGYG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 1 cut(s) 237
SsiI CCGC 6 cut(s) 19, 32, 35, 57, 79, 96
SspDI GGCGCC 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 4, 44
TaiI ACGT 1 cut(s) 189
TaqI TCGA 5 cut(s) 15, 64, 102, 178, 234
TasI AATT 1 cut(s) 237
TauI GCSGC 2 cut(s) 34, 37
TspGWI ACGGA 1 cut(s) 107
XapI RAATTY 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.