Prupe.7G059600_v2.0.a1

DTW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013032
Physical Location & Seq
Reverse (-)
9888847 .. 9889653
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G059600.1

Sequence Viewer

Length: 807 bp
ATGGAACCAGAAGAAGACATCCACATCTCCGACAGCGCCGCCGCCGATCCACCGCCGCGTGGGCCCAGGCCCATATGCAGCAACTGCACCCGACCCGGCCCGGTCTGCCTCTGCCACTCTCTCCCGGCCCAGCCCATCAAAACCCAGACCCAAATCATAATCCTCCACCACCCCCACGAAGCCAATCACAAGCTCTCCACAACCCCAATCCTCACCAAATGCCTCTCCAACTCCACCGCCATTGTTGCGCGCAAGCTCAAGCCAGGCCTCTCCCCGCTCCTTGATCAATCACCGCCCGCCATCTACCTCTTCCCCCCAACTAAAGCCTCACCCGCCGTCAGCCTATCAGACCTCCCCAGCTCACCCGTCCCCAAACACTCCCCTTTGGTGCTCATCGCCTTCGACGCCACGTGGAAGCATGCTAGGGAGATGGTCAAAGCCAGCGAGGGGTTTTTGTCGACGTTTGCGAGCAGGGTTTGTTTGGATGTGGATGAGAGTGCAAGCGGTGGGAGCATTTACGACTCGGAGTTGGTTTTGCGGAAAGAGCCGTTTGGTGGGTGCGTGAGTACCATGGAGGCTGTGGCCAGGGCCTTGGGTGTGATTGAGCCCAATGGGGTCGAGATTGAGGCCAGGCTTGTTAGGGTTTTGAGGGACATGGTGGCTTCGCAGGCCCGGTATCTTAAGACGCCCGCAAAGCCCAGGCCCAAGTTGTTGAAGAAAAGCAAGGAGAAACAGCGGCTCAAGAATGAGAGTAAGAGTGAGAGTGTAAGTGAGAGTGACCCGATATTGGGTCACGGGCAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

269

Amino Acids

28.97

Weight (kDa)

8.8

Isoelectric Point (pI)

58.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41750
fragaria_vesca FvH4_6g23860
prunus_persica Prupe.7G059600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0482541
rosa_laevigata RLG00000023346
rosa_multiflora Rmu_sc0002969.1_g000012 Rmu_sc0005613.1_g000004
rosa_roxburghii Rroxscaffold_6G00399180 Rroxscaffold_6G00399300
rosa_rugosa Rorug03G0196800
rosa_samantha Rh3AG248300 Rh3BG283300 Rh3CG279900 Rh3DG276200 Rh3DG276300 Rh4BG263400
rosa_wichuraiana Rw0G013130 Rw3G022360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 458
AccII CGCG 2 cut(s) 58, 250
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 582
AcvI CACGTG 1 cut(s) 411
AcyI GRCGYC 2 cut(s) 405, 686
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 5 cut(s) 59, 447, 554, 787, 788
AflII CTTAAG 1 cut(s) 680
AgsI TTSAA 1 cut(s) 715
AjnI CCWGG 5 cut(s) 65, 262, 584, 629, 698
AluBI AGCT 3 cut(s) 193, 256, 360
AluI AGCT 3 cut(s) 193, 256, 360
Alw21I GWGCWC 1 cut(s) 393
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 84
ApaI GGGCCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 78
AspLEI GCGC 3 cut(s) 38, 250, 252
AspS9I GGNCC 8 cut(s) 62, 63, 69, 98, 127, 588, 670, 702
AsuC2I CCSGG 4 cut(s) 96, 101, 125, 673
AsuHPI GGTGA 4 cut(s) 205, 282, 321, 354
BaeGI GKGCMC 1 cut(s) 66
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 2 cut(s) 66, 609
BbrPI CACGTG 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 90
BccI CCATC 3 cut(s) 143, 308, 424
BceAI ACGGC 2 cut(s) 320, 532
BciT130I CCWGG 5 cut(s) 67, 264, 586, 631, 700
BclI TGATCA 1 cut(s) 283
BcnI CCSGG 4 cut(s) 96, 101, 125, 673
BfaI CTAG 1 cut(s) 423
BfoI RGCGCY 1 cut(s) 39
BfrI CTTAAG 1 cut(s) 680
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 5 cut(s) 39, 42, 56, 79, 737
BlsI GCNGC 5 cut(s) 40, 43, 57, 80, 738
Bme1390I CCNGG 9 cut(s) 67, 96, 101, 125, 264, 586, 631, 673, 700
BmgT120I GGNCC 8 cut(s) 62, 63, 69, 98, 127, 588, 670, 702
BmiI GGNNCC 2 cut(s) 6, 64
BmrFI CCNGG 9 cut(s) 67, 96, 101, 125, 264, 586, 631, 673, 700
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 242, 725
BpuMI CCSGG 4 cut(s) 96, 101, 125, 673
BsaAI YACGTR 1 cut(s) 411
BsaHI GRCGYC 2 cut(s) 405, 686
BsaJI CCNNGG 5 cut(s) 65, 570, 585, 591, 698
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 447, 554, 787, 788
BseBI CCWGG 5 cut(s) 67, 264, 586, 631, 700
BseDI CCNNGG 5 cut(s) 65, 570, 585, 591, 698
BseGI GGATG 3 cut(s) 18, 490, 496
BseLI CCNNNNNNNGG 5 cut(s) 59, 447, 554, 787, 788
BsePI GCGCGC 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 66
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 2 cut(s) 129, 356
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 58, 250
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 4 cut(s) 96, 101, 125, 673
BslFI GGGAC 2 cut(s) 353, 665
BslI CCNNNNNNNGG 5 cut(s) 59, 447, 554, 787, 788
BsmFI GGGAC 2 cut(s) 353, 665
Bsp120I GGGCCC 1 cut(s) 62
Bsp1286I GDGCHC 3 cut(s) 66, 393, 609
Bsp143I GATC 2 cut(s) 46, 283
Bsp19I CCATGG 1 cut(s) 570
BspFNI CGCG 2 cut(s) 58, 250
BspLI GGNNCC 2 cut(s) 6, 64
BspPI GGATC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 680
BsrBI CCGCTC 1 cut(s) 277
BssECI CCNNGG 5 cut(s) 65, 570, 585, 591, 698
BssHII GCGCGC 1 cut(s) 248
BssMI GATC 2 cut(s) 46, 283
BssNI GRCGYC 2 cut(s) 405, 686
BssT1I CCWWGG 2 cut(s) 570, 591
Bst2UI CCWGG 5 cut(s) 67, 264, 586, 631, 700
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 2 cut(s) 405, 686
BstAFI CTTAAG 1 cut(s) 680
BstAPI GCANNNNNTGC 1 cut(s) 84
BstBAI YACGTR 1 cut(s) 411
BstC8I GCNNGC 9 cut(s) 250, 254, 297, 420, 442, 469, 502, 669, 690
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 3 cut(s) 18, 490, 496
BstFNI CGCG 2 cut(s) 58, 250
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 3 cut(s) 38, 250, 252
BstKTI GATC 2 cut(s) 49, 286
BstMBI GATC 2 cut(s) 46, 283
BstNI CCWGG 5 cut(s) 67, 264, 586, 631, 700
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 9 cut(s) 65, 94, 99, 123, 262, 584, 629, 671, 698
BstSLI GKGCMC 1 cut(s) 66
BstUI CGCG 2 cut(s) 58, 250
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 592
BtgI CCRYGG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 379
BtsCI GGATG 3 cut(s) 18, 490, 496
Cac8I GCNNGC 9 cut(s) 250, 254, 297, 420, 442, 469, 502, 669, 690
CaiI CAGNNNCTG 1 cut(s) 84
CfoI GCGC 3 cut(s) 38, 250, 252
Cfr13I GGNCC 8 cut(s) 62, 63, 69, 98, 127, 588, 670, 702
CseI GACGC 2 cut(s) 413, 694
Csp6I GTAC 1 cut(s) 567
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 3 cut(s) 419, 571, 655
CviQI GTAC 1 cut(s) 567
DpnI GATC 2 cut(s) 48, 285
DpnII GATC 2 cut(s) 46, 283
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 2 cut(s) 570, 591
Eco147I AGGCCT 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 66, 609
Eco72I CACGTG 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 588
EcoRII CCWGG 5 cut(s) 65, 262, 584, 629, 698
EcoT14I CCWWGG 2 cut(s) 570, 591
EcoT38I GRGCYC 2 cut(s) 66, 609
ErhI CCWWGG 2 cut(s) 570, 591
FaeI CATG 3 cut(s) 422, 574, 658
FaiI YATR 6 cut(s) 74, 76, 158, 420, 572, 656
FaqI GGGAC 2 cut(s) 353, 665
FatI CATG 3 cut(s) 418, 570, 654
FauI CCCGC 4 cut(s) 282, 304, 340, 697
FauNDI CATATG 1 cut(s) 74
FbaI TGATCA 1 cut(s) 283
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 5 cut(s) 39, 42, 56, 79, 737
FokI GGATG 3 cut(s) 5, 497, 503
FriOI GRGCYC 2 cut(s) 66, 609
Fsp4HI GCNGC 5 cut(s) 39, 42, 56, 79, 737
FspBI CTAG 1 cut(s) 423
GlaI GCGC 3 cut(s) 37, 249, 251
GluI GCNGC 5 cut(s) 39, 42, 56, 79, 737
GsaI CCCAGC 2 cut(s) 133, 360
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 4 cut(s) 96, 101, 125, 673
HgaI GACGC 2 cut(s) 413, 694
HhaI GCGC 3 cut(s) 38, 250, 252
Hin1I GRCGYC 2 cut(s) 405, 686
Hin1II CATG 3 cut(s) 422, 574, 658
Hin6I GCGC 3 cut(s) 36, 248, 250
HinP1I GCGC 3 cut(s) 36, 248, 250
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 1 cut(s) 521
HpaII CCGG 4 cut(s) 96, 101, 125, 673
HphI GGTGA 4 cut(s) 205, 282, 321, 354
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 3 cut(s) 31, 349, 526
Hpy188III TCNNGA 2 cut(s) 619, 742
Hpy8I GTNNAC 1 cut(s) 459
Hpy99I CGWCG 2 cut(s) 407, 463
HpyAV CCTTC 1 cut(s) 409
HpyCH4IV ACGT 2 cut(s) 410, 461
HpyCH4V TGCA 3 cut(s) 78, 87, 500
HpySE526I ACGT 2 cut(s) 410, 461
Hsp92I GRCGYC 2 cut(s) 405, 686
Hsp92II CATG 3 cut(s) 422, 574, 658
HspAI GCGC 3 cut(s) 36, 248, 250
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 2 cut(s) 46, 283
LmnI GCTCC 2 cut(s) 282, 510
Lsp1109I GCAGC 1 cut(s) 90
MaeI CTAG 1 cut(s) 423
MaeII ACGT 2 cut(s) 410, 461
MaeIII GTNAC 2 cut(s) 776, 791
MalI GATC 2 cut(s) 48, 285
MbiI CCGCTC 1 cut(s) 277
MboI GATC 2 cut(s) 46, 283
MboII GAAGA 4 cut(s) 23, 26, 301, 727
MhlI GDGCHC 3 cut(s) 66, 393, 609
MlsI TGGCCA 1 cut(s) 584
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 2 cut(s) 54, 252
Mox20I TGGCCA 1 cut(s) 584
MscI TGGCCA 1 cut(s) 584
MseI TTAA 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 736
MspCI CTTAAG 1 cut(s) 680
MspI CCGG 4 cut(s) 96, 101, 125, 673
MspR9I CCNGG 9 cut(s) 67, 96, 101, 125, 264, 586, 631, 673, 700
MvaI CCWGG 5 cut(s) 67, 264, 586, 631, 700
MvnI CGCG 2 cut(s) 58, 250
NciI CCSGG 4 cut(s) 96, 101, 125, 673
NcoI CCATGG 1 cut(s) 570
NdeI CATATG 1 cut(s) 74
NdeII GATC 2 cut(s) 46, 283
NlaIII CATG 3 cut(s) 422, 574, 658
NlaIV GGNNCC 2 cut(s) 6, 64
NmuCI GTSAC 2 cut(s) 776, 791
NspI RCATGY 1 cut(s) 422
PaeI GCATGC 1 cut(s) 422
PauI GCGCGC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PkrI GCNGC 5 cut(s) 40, 43, 57, 80, 738
PleI GAGTC 1 cut(s) 515
PmaCI CACGTG 1 cut(s) 411
PmlI CACGTG 1 cut(s) 411
PpsI GAGTC 1 cut(s) 515
Ppu21I YACGTR 1 cut(s) 411
Psp6I CCWGG 5 cut(s) 65, 262, 584, 629, 698
PspCI CACGTG 1 cut(s) 411
PspFI CCCAGC 2 cut(s) 129, 356
PspGI CCWGG 5 cut(s) 65, 262, 584, 629, 698
PspN4I GGNNCC 2 cut(s) 6, 64
PspOMI GGGCCC 1 cut(s) 62
PspPI GGNCC 8 cut(s) 62, 63, 69, 98, 127, 588, 670, 702
PstNI CAGNNNCTG 1 cut(s) 84
PteI GCGCGC 1 cut(s) 248
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
SalI GTCGAC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 681
SatI GCNGC 5 cut(s) 39, 42, 56, 79, 737
Sau3AI GATC 2 cut(s) 46, 283
Sau96I GGNCC 8 cut(s) 62, 63, 69, 98, 127, 588, 670, 702
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 9 cut(s) 67, 96, 101, 125, 264, 586, 631, 673, 700
SduI GDGCHC 3 cut(s) 66, 393, 609
SetI ASST 7 cut(s) 195, 258, 309, 354, 362, 413, 464
SmlI CTYRAG 3 cut(s) 257, 680, 740
SmoI CTYRAG 3 cut(s) 257, 680, 740
SphI GCATGC 1 cut(s) 422
SseBI AGGCCT 1 cut(s) 267
SspMI CTAG 1 cut(s) 423
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 9 cut(s) 65, 94, 99, 123, 262, 584, 629, 671, 698
StyI CCWWGG 2 cut(s) 570, 591
TaiI ACGT 2 cut(s) 413, 464
TaqI TCGA 3 cut(s) 402, 458, 618
TauI GCSGC 4 cut(s) 41, 44, 58, 739
Tru1I TTAA 1 cut(s) 681
Tru9I TTAA 1 cut(s) 681
TseFI GTSAC 2 cut(s) 776, 791
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 2 cut(s) 776, 791
Vha464I CTTAAG 1 cut(s) 680
XceI RCATGY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XmiI GTMKAC 1 cut(s) 458
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.