Rh3CG279900

DTW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013032
Physical Location & Seq
Forward (+)
28139325 .. 28140121
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG279900.1

Sequence Viewer

Length: 696 bp
ATGGAAGCTGAAGACGACGAATTCGAAACCGCCTACAACGCCACCTCTTCGCCGCCGCGGAGGCCGAGGTCCATCTGCGGCAACTCACAAGCTGTCCACCACGCCGGTCCTGACAAAATGCCTGGCCAACTCCACCGCCATCGTCAGCCGCCGCCTCAAGCCGGGCCTGTCCCCGCTCCTCGACCAATCACCTTCCGCCATCTACCTCTTCCCGCCCTCGAAATCCTCGCCGTCCGTCAGCTTATCCCGTCTCCGGATCCCCGACCAGTCCCGGCGGTGGTCGTAGCTTTCGACGCGACGTGGAAGCACGCGAAGGAGATGGTGAGGGCGAGCGAGGGGTTCCTGTCGAAATTCGCGAGGAGGGTGAGTTTGGATGTGGATGAGGATGTGAGGGGAGGGAGCATCTACGACTCGGAGTTGGTTCTGAGGAAGGAGCCGTTTGGTGGGTGCGTGAGTACCATGGAGGCCGTGGCTAGGGCTCTGAGAGTGCTCGAGCCCAATGGGTTGGAGATTGAGACCAAGCTTATTCGGGTTTTGAGGGACATGGTGGCGCTGCAGGCGGGTTATCTTAAGCCTGTGAAGCCCAGGCCCAAGTTGTTGAAGAAAGGGAAGGAGGAACAGAGGCCCAAGAATGAGACTCAGGAGAGTGAGAGTTCCTTGATATTTGGTGAAGGTCAGCCACTCAGCTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

231

Amino Acids

25.57

Weight (kDa)

8.88

Isoelectric Point (pI)

62.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DTW PF03942 91 - 186 4.2e-17 DTW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41750
fragaria_vesca FvH4_6g23860
prunus_persica Prupe.7G059600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0482541
rosa_laevigata RLG00000023346
rosa_multiflora Rmu_sc0002969.1_g000012 Rmu_sc0005613.1_g000004
rosa_roxburghii Rroxscaffold_6G00399180 Rroxscaffold_6G00399300
rosa_rugosa Rorug03G0196800
rosa_samantha Rh3AG248300 Rh3BG283300 Rh3CG279900 Rh3DG276200 Rh3DG276300 Rh4BG263400
rosa_wichuraiana Rw0G013130 Rw3G022360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 176
AccII CGCG 4 cut(s) 58, 296, 311, 356
AccIII TCCGGA 1 cut(s) 253
AclWI GGATC 2 cut(s) 251, 264
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 2 cut(s) 20, 350
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 5 cut(s) 161, 253, 277, 443, 474
AflII CTTAAG 1 cut(s) 569
AgsI TTSAA 1 cut(s) 601
AjiI CACGTC 1 cut(s) 300
AjnI CCWGG 2 cut(s) 121, 584
AluBI AGCT 6 cut(s) 8, 92, 241, 287, 523, 687
AluI AGCT 6 cut(s) 8, 92, 241, 287, 523, 687
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 3 cut(s) 255, 509, 629
AlwI GGATC 2 cut(s) 251, 264
Ama87I CYCGRG 1 cut(s) 491
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 6 cut(s) 62, 124, 164, 465, 587, 623
ApeKI GCWGC 1 cut(s) 553
ApoI RAATTY 2 cut(s) 20, 350
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 5 cut(s) 69, 107, 164, 588, 624
AsuC2I CCSGG 2 cut(s) 163, 272
AsuHPI GGTGA 4 cut(s) 181, 334, 376, 680
AsuII TTCGAA 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 2 cut(s) 69, 107
BalI TGGCCA 1 cut(s) 126
BamHI GGATCC 1 cut(s) 256
BanII GRGCYC 2 cut(s) 481, 498
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 540
BccI CCATC 4 cut(s) 80, 147, 207, 313
BceAI ACGGC 3 cut(s) 215, 421, 452
BciT130I CCWGG 2 cut(s) 123, 586
BcnI CCSGG 2 cut(s) 163, 272
BcoDI GTCTC 3 cut(s) 255, 509, 629
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 554
BfoI RGCGCY 1 cut(s) 554
BfrI CTTAAG 1 cut(s) 569
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 6 cut(s) 53, 56, 79, 149, 152, 554
BlsI GCNGC 6 cut(s) 54, 57, 80, 150, 153, 555
Bme1390I CCNGG 4 cut(s) 123, 163, 272, 586
Bme18I GGWCC 2 cut(s) 69, 107
BmeT110I CYCGRG 1 cut(s) 491
BmgBI CACGTC 1 cut(s) 300
BmgT120I GGNCC 5 cut(s) 69, 107, 164, 588, 624
BmiI GGNNCC 3 cut(s) 258, 341, 435
BmrFI CCNGG 4 cut(s) 123, 163, 272, 586
BmsI GCATC 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 141
BpuMI CCSGG 2 cut(s) 163, 272
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 5 cut(s) 56, 65, 459, 468, 584
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 253, 277, 443, 474
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 2 cut(s) 123, 586
BseDI CCNNGG 5 cut(s) 56, 65, 459, 468, 584
BseGI GGATG 3 cut(s) 379, 385, 391
BseLI CCNNNNNNNGG 5 cut(s) 161, 253, 277, 443, 474
BseMII CTCAG 3 cut(s) 416, 473, 653
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 2 cut(s) 168, 373
BseXI GCAGC 1 cut(s) 540
Bsh1236I CGCG 4 cut(s) 58, 296, 311, 356
BshFI GGCC 6 cut(s) 64, 126, 166, 467, 589, 625
BsiHKAI GWGCWC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 4 cut(s) 105, 162, 254, 272
BslFI GGGAC 3 cut(s) 155, 254, 554
BslI CCNNNNNNNGG 5 cut(s) 161, 253, 277, 443, 474
BsmAI GTCTC 3 cut(s) 255, 509, 629
BsmBI CGTCTC 1 cut(s) 255
BsmFI GGGAC 3 cut(s) 155, 254, 554
BsnI GGCC 6 cut(s) 64, 126, 166, 467, 589, 625
Bso31I GGTCTC 1 cut(s) 509
BsoBI CYCGRG 1 cut(s) 491
Bsp119I TTCGAA 1 cut(s) 24
Bsp1286I GDGCHC 3 cut(s) 481, 492, 498
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 1 cut(s) 256
Bsp19I CCATGG 1 cut(s) 459
Bsp68I TCGCGA 1 cut(s) 356
BspANI GGCC 6 cut(s) 64, 126, 166, 467, 589, 625
BspCNI CTCAG 4 cut(s) 417, 474, 652, 696
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 4 cut(s) 58, 296, 311, 356
BspLI GGNNCC 3 cut(s) 258, 341, 435
BspMAI CTGCAG 1 cut(s) 558
BspPI GGATC 2 cut(s) 251, 264
BspT104I TTCGAA 1 cut(s) 24
BspTI CTTAAG 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 5 cut(s) 56, 65, 459, 468, 584
BssMI GATC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 123, 586
Bst6I CTCTTC 2 cut(s) 52, 213
BstAFI CTTAAG 1 cut(s) 569
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 3 cut(s) 309, 331, 558
BstDEI CTNAG 4 cut(s) 425, 482, 639, 683
BstDSI CCRYGG 3 cut(s) 56, 459, 468
BstF5I GGATG 3 cut(s) 379, 385, 391
BstFNI CGCG 4 cut(s) 58, 296, 311, 356
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 3 cut(s) 255, 509, 629
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 5 cut(s) 38, 61, 293, 557, 580
BstNI CCWGG 2 cut(s) 123, 586
BstSCI CCNGG 4 cut(s) 121, 161, 270, 584
BstSFI CTRYAG 1 cut(s) 554
BstUI CGCG 4 cut(s) 58, 296, 311, 356
BstV1I GCAGC 1 cut(s) 540
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 6 cut(s) 64, 126, 166, 467, 589, 625
BtgI CCRYGG 3 cut(s) 56, 459, 468
BtrI CACGTC 1 cut(s) 300
BtsCI GGATG 3 cut(s) 379, 385, 391
BtuMI TCGCGA 1 cut(s) 356
Cac8I GCNNGC 3 cut(s) 309, 331, 558
CfoI GCGC 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 5 cut(s) 69, 107, 164, 588, 624
Cfr42I CCGCGG 1 cut(s) 59
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 456
CviAII CATG 2 cut(s) 460, 544
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 4 cut(s) 425, 482, 639, 683
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 52, 213
EarI CTCTTC 2 cut(s) 52, 213
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 2 cut(s) 481, 498
Eco31I GGTCTC 1 cut(s) 509
Eco47I GGWCC 2 cut(s) 69, 107
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 121, 584
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 2 cut(s) 481, 498
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 2 cut(s) 463, 547
FaiI YATR 2 cut(s) 461, 545
FaqI GGGAC 3 cut(s) 155, 254, 554
FatI CATG 2 cut(s) 459, 543
FauI CCCGC 3 cut(s) 181, 220, 553
Fnu4HI GCNGC 6 cut(s) 53, 56, 79, 149, 152, 554
FokI GGATG 3 cut(s) 386, 392, 398
FriOI GRGCYC 2 cut(s) 481, 498
Fsp4HI GCNGC 6 cut(s) 53, 56, 79, 149, 152, 554
FspBI CTAG 1 cut(s) 474
GlaI GCGC 1 cut(s) 552
GluI GCNGC 6 cut(s) 53, 56, 79, 149, 152, 554
HaeII RGCGCY 1 cut(s) 554
HaeIII GGCC 6 cut(s) 64, 126, 166, 467, 589, 625
HapII CCGG 4 cut(s) 105, 162, 254, 272
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 553
Hin1II CATG 2 cut(s) 463, 547
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 2 cut(s) 410, 637
HpaII CCGG 4 cut(s) 105, 162, 254, 272
HphI GGTGA 4 cut(s) 181, 334, 376, 680
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 415, 426, 483
Hpy188III TCNNGA 4 cut(s) 110, 254, 355, 641
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 3 cut(s) 20, 296, 301
HpyAV CCTTC 5 cut(s) 202, 307, 424, 604, 665
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 1 cut(s) 556
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 61, 293, 557, 580
HpyF3I CTNAG 4 cut(s) 425, 482, 639, 683
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 2 cut(s) 463, 547
HspAI GCGC 1 cut(s) 551
Kpn2I TCCGGA 1 cut(s) 253
KspI CCGCGG 1 cut(s) 59
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 3 cut(s) 181, 399, 433
Lsp1109I GCAGC 1 cut(s) 540
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 299
MalI GATC 1 cut(s) 258
MbiI CCGCTC 1 cut(s) 176
MboI GATC 1 cut(s) 256
MboII GAAGA 4 cut(s) 23, 39, 200, 613
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 3 cut(s) 481, 492, 498
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 2 cut(s) 20, 350
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 2 cut(s) 404, 631
MmeI TCCRAC 1 cut(s) 486
Mox20I TGGCCA 1 cut(s) 126
MroI TCCGGA 1 cut(s) 253
MscI TGGCCA 1 cut(s) 126
MseI TTAA 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 58
MspCI CTTAAG 1 cut(s) 569
MspI CCGG 4 cut(s) 105, 162, 254, 272
MspR9I CCNGG 4 cut(s) 123, 163, 272, 586
MvaI CCWGG 2 cut(s) 123, 586
MvnI CGCG 4 cut(s) 58, 296, 311, 356
MwoI GCNNNNNNNGC 5 cut(s) 38, 61, 293, 557, 580
NciI CCSGG 2 cut(s) 163, 272
NcoI CCATGG 1 cut(s) 459
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 463, 547
NlaIV GGNNCC 3 cut(s) 258, 341, 435
NmeAIII GCCGAG 1 cut(s) 90
NruI TCGCGA 1 cut(s) 356
NspV TTCGAA 1 cut(s) 24
PaeR7I CTCGAG 1 cut(s) 491
PcsI WCGNNNNNNNCGW 3 cut(s) 21, 288, 353
PkrI GCNGC 6 cut(s) 54, 57, 80, 150, 153, 555
PleI GAGTC 2 cut(s) 404, 631
PpsI GAGTC 2 cut(s) 404, 631
Psp6I CCWGG 2 cut(s) 121, 584
PspGI CCWGG 2 cut(s) 121, 584
PspN4I GGNNCC 3 cut(s) 258, 341, 435
PspPI GGNCC 5 cut(s) 69, 107, 164, 588, 624
PspXI VCTCGAGB 1 cut(s) 491
PstI CTGCAG 1 cut(s) 558
PsuI RGATCY 1 cut(s) 256
RruI TCGCGA 1 cut(s) 356
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
SacII CCGCGG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 6 cut(s) 53, 56, 79, 149, 152, 554
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 5 cut(s) 69, 107, 164, 588, 624
SchI GAGTC 2 cut(s) 404, 631
ScrFI CCNGG 4 cut(s) 123, 163, 272, 586
SduI GDGCHC 3 cut(s) 481, 492, 498
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 554
Sfr274I CTCGAG 1 cut(s) 491
Sfr303I CCGCGG 1 cut(s) 59
SfuI TTCGAA 1 cut(s) 24
SgrBI CCGCGG 1 cut(s) 59
SinI GGWCC 2 cut(s) 69, 107
SlaI CTCGAG 1 cut(s) 491
SmlI CTYRAG 3 cut(s) 156, 491, 569
SmoI CTYRAG 3 cut(s) 156, 491, 569
Sse9I AATT 2 cut(s) 20, 350
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 4 cut(s) 121, 161, 270, 584
StyI CCWWGG 1 cut(s) 459
TaiI ACGT 1 cut(s) 302
TaqI TCGA 6 cut(s) 24, 181, 219, 291, 347, 492
TasI AATT 2 cut(s) 20, 350
TauI GCSGC 5 cut(s) 55, 58, 81, 151, 154
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseI GCWGC 1 cut(s) 553
TspGWI ACGGA 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 69, 107
XapI RAATTY 2 cut(s) 20, 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XhoI CTCGAG 1 cut(s) 491
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.