Rorug03G0196800

DTW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013032
Physical Location & Seq
Reverse (-)
17283666 .. 17286406
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0196800.1

Sequence Viewer

Length: 1080 bp
ATGGCGACGTCATATCATTCACTCTCCGCCATTGCAAGTTCTATTGTTATTCTCTTTCTCTTAGTTCGCTCTAATGCACAAGATAATGTTCCTCACCATGGTGGTGTTATTAGCCTCAACATGATCCATCGTGACACTCCATCTTCTCCCTTATACAATTCGTCGTTAACTGATTGGCAACGAGTAAGCAATGCTTTGCGACGTTCACGTGATCGCATCAACCGTTTCACCTCATCAGAAGATGAATCACCTGATCATCTAATGTACAGCGAAGGAGATTACCTGGTGAACATATCAATCGGTACACCACCAAGACCTTTCATTGGAATTGTTGACACCGGAAGCGATCTTATATGGACACAATGCATGCCATGCAGGCAATGTTTCGAGCAAAACCCTCCTCTCTTTGATCCAGCTTCTTCATCAACTTACAGAGCTCTTTCGTGTATGTCCAACGAATGTCGTTTGCTAAGACCAGCCTCCTTTTGTTCCAGTAATTCAAGCTCTTGTGACTATCAATATTCATATGTCGACGGGTCTAATACCACAGGAAACCTGTCCCTCGACACTGTTACGTTGGGTTCCACATCCATTCCCAAAACTATATTTGGTTGCGGACACCAAAATGGAGGAGATTTCAGTGGGATTGAGTCGGGAATTGTCGGACTAGGACGTGGAGCTGTGTCGTTTATCTCCCAAATAGGGGGTGTTAGCGCCACTCAAACCTTTTATATCGTTGAGCTTCAAGGCATTAGTGTTGGAGCCAACAATATCACACTTAATGCAGATGCCAAGGCCTTTAAGGGTAACATGATCATAGACTCGGGGACTAACTTAATGTACTTGCCGGAGTTGCTTTACGACAGTTTCAAATCAGCAATTGAAGAAGAACTTAAATATCGAGATCTGGAGATGAAGCAAGATCCGACTGGTTCTGGGCTGTCTTGTTTCTTGACTAAGTATGATATTCTTCCTGGCCCCAATGTCACTTTCCATTTTAAAGGGGCAGATGTGAAGCTAAAATCTGCCAACACTTTTGTTAGGGTGGATGATGAGACTGTTTGCTTAGCATTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

359

Amino Acids

39.11

Weight (kDa)

5.15

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 94 - 237 1.3e-46 Xylanase inhibitor N-terminal
Asp PF00026 94 - 226 8.7e-11 Eukaryotic aspartyl protease
TAXi_C PF14541 244 - 358 5.9e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41750
fragaria_vesca FvH4_6g23860
prunus_persica Prupe.7G059600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0482541
rosa_laevigata RLG00000023346
rosa_multiflora Rmu_sc0002969.1_g000012 Rmu_sc0005613.1_g000004
rosa_roxburghii Rroxscaffold_6G00399180 Rroxscaffold_6G00399300
rosa_rugosa Rorug03G0196800
rosa_samantha Rh3AG248300 Rh3BG283300 Rh3CG279900 Rh3DG276200 Rh3DG276300 Rh4BG263400
rosa_wichuraiana Rw0G013130 Rw3G022360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 531
AciI CCGC 2 cut(s) 27, 615
AclWI GGATC 3 cut(s) 118, 404, 917
AcvI CACGTG 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 3 cut(s) 266, 304, 842
AfiI CCNNNNNNNGG 4 cut(s) 98, 323, 702, 703
AgsI TTSAA 4 cut(s) 501, 746, 871, 884
AjiI CACGTC 1 cut(s) 674
AjnI CCWGG 2 cut(s) 282, 973
AjuI GAANNNNNNNTTGG 2 cut(s) 974, 1006
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 6 cut(s) 416, 437, 504, 680, 742, 1018
AluI AGCT 6 cut(s) 416, 437, 504, 680, 742, 1018
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 1 cut(s) 1049
AlwI GGATC 3 cut(s) 118, 404, 917
Ama87I CYCGRG 1 cut(s) 823
AoxI GGCC 2 cut(s) 795, 976
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 1 cut(s) 977
AsuHPI GGTGA 4 cut(s) 86, 220, 240, 298
AvaI CYCGRG 1 cut(s) 823
BanII GRGCYC 1 cut(s) 439
BbrPI CACGTG 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 439
BccI CCATC 2 cut(s) 135, 148
BciT130I CCWGG 2 cut(s) 284, 975
BclI TGATCA 2 cut(s) 253, 813
BcoDI GTCTC 1 cut(s) 1049
BfaI CTAG 1 cut(s) 668
BfoI RGCGCY 1 cut(s) 717
BglI GCCNNNNNGGC 1 cut(s) 376
BglII AGATCT 1 cut(s) 904
BlpI GCTNAGC 1 cut(s) 1066
Bme1390I CCNGG 2 cut(s) 284, 975
BmeT110I CYCGRG 1 cut(s) 823
BmgBI CACGTC 1 cut(s) 674
BmgT120I GGNCC 1 cut(s) 977
BmiI GGNNCC 3 cut(s) 583, 763, 979
BmrFI CCNGG 2 cut(s) 284, 975
BmsI GCATC 2 cut(s) 225, 778
BpmI CTGGAG 1 cut(s) 929
Bpu1102I GCTNAGC 1 cut(s) 1066
BsaAI YACGTR 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 97, 792
BsaWI WCCGGW 1 cut(s) 338
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 323, 702, 703
Bse1I ACTGG 2 cut(s) 492, 934
Bse3DI GCAATG 3 cut(s) 30, 196, 386
BseBI CCWGG 2 cut(s) 284, 975
BseDI CCNNGG 2 cut(s) 97, 792
BseGI GGATG 2 cut(s) 587, 1054
BseLI CCNNNNNNNGG 4 cut(s) 98, 323, 702, 703
BseMI GCAATG 3 cut(s) 30, 196, 386
BseNI ACTGG 2 cut(s) 492, 934
BseRI GAGGAG 2 cut(s) 390, 645
BshFI GGCC 2 cut(s) 797, 978
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 2 cut(s) 339, 848
BslFI GGGAC 2 cut(s) 544, 841
BslI CCNNNNNNNGG 4 cut(s) 98, 323, 702, 703
BsmAI GTCTC 1 cut(s) 1049
BsmFI GGGAC 2 cut(s) 544, 841
BsmI GAATGC 1 cut(s) 1070
BsnI GGCC 2 cut(s) 797, 978
BsoBI CYCGRG 1 cut(s) 823
Bsp1286I GDGCHC 1 cut(s) 439
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 8 cut(s) 123, 211, 253, 346, 409, 813, 904, 922
Bsp1720I GCTNAGC 1 cut(s) 1066
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 2 cut(s) 27, 615
BspANI GGCC 2 cut(s) 797, 978
BspLI GGNNCC 3 cut(s) 583, 763, 979
BspPI GGATC 3 cut(s) 118, 404, 917
BsrDI GCAATG 3 cut(s) 30, 196, 386
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 2 cut(s) 492, 934
BssECI CCNNGG 2 cut(s) 97, 792
BssMI GATC 8 cut(s) 123, 211, 253, 346, 409, 813, 904, 922
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 2 cut(s) 97, 792
Bst2UI CCWGG 2 cut(s) 284, 975
Bst4CI ACNGT 4 cut(s) 224, 571, 866, 1060
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 372
BstAUI TGTACA 1 cut(s) 264
BstBAI YACGTR 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 368, 377
BstDEI CTNAG 4 cut(s) 61, 470, 957, 1066
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 587, 1054
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 8 cut(s) 126, 214, 256, 349, 412, 816, 907, 925
BstMAI GTCTC 1 cut(s) 1049
BstMBI GATC 8 cut(s) 123, 211, 253, 346, 409, 813, 904, 922
BstMWI GCNNNNNNNGC 3 cut(s) 372, 376, 853
BstNI CCWGG 2 cut(s) 284, 975
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 282, 973
BstX2I RGATCY 2 cut(s) 904, 922
BstYI RGATCY 2 cut(s) 904, 922
BsuRI GGCC 2 cut(s) 797, 978
BtgI CCRYGG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 2 cut(s) 587, 1054
BtsIMutI CAGTG 2 cut(s) 567, 646
Cac8I GCNNGC 2 cut(s) 368, 377
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 1 cut(s) 977
CsiI ACCWGGT 1 cut(s) 282
Csp6I GTAC 3 cut(s) 265, 303, 841
CviAII CATG 5 cut(s) 98, 121, 367, 372, 811
CviQI GTAC 3 cut(s) 265, 303, 841
DdeI CTNAG 4 cut(s) 61, 470, 957, 1066
DpnI GATC 8 cut(s) 125, 213, 255, 348, 411, 815, 906, 924
DpnII GATC 8 cut(s) 123, 211, 253, 346, 409, 813, 904, 922
DraI TTTAAA 1 cut(s) 1000
EciI GGCGGA 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 437
Eco130I CCWWGG 2 cut(s) 97, 792
Eco147I AGGCCT 1 cut(s) 797
Eco24I GRGCYC 1 cut(s) 439
Eco53kI GAGCTC 1 cut(s) 437
Eco72I CACGTG 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 282, 973
EcoT14I CCWWGG 2 cut(s) 97, 792
EcoT22I ATGCAT 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 439
ErhI CCWWGG 2 cut(s) 97, 792
FaeI CATG 5 cut(s) 101, 124, 370, 375, 814
FalI AAGNNNNNCTT 4 cut(s) 178, 210, 876, 908
FaqI GGGAC 2 cut(s) 544, 841
FatI CATG 5 cut(s) 97, 120, 366, 371, 810
FauNDI CATATG 1 cut(s) 526
FbaI TGATCA 2 cut(s) 253, 813
FblI GTMKAC 1 cut(s) 531
FokI GGATG 2 cut(s) 574, 1061
FriOI GRGCYC 1 cut(s) 439
FspBI CTAG 1 cut(s) 668
GlaI GCGC 1 cut(s) 715
GsuI CTGGAG 1 cut(s) 929
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 2 cut(s) 797, 978
HapII CCGG 2 cut(s) 339, 848
HhaI GCGC 1 cut(s) 716
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 5 cut(s) 101, 124, 370, 375, 814
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HincII GTYRAC 3 cut(s) 168, 334, 532
HindII GTYRAC 3 cut(s) 168, 334, 532
HinfI GANTC 3 cut(s) 245, 650, 821
HpaI GTTAAC 1 cut(s) 168
HpaII CCGG 2 cut(s) 339, 848
HphI GGTGA 4 cut(s) 86, 220, 240, 298
Hpy166II GTNNAC 6 cut(s) 168, 206, 289, 305, 334, 532
Hpy188I TCNGA 3 cut(s) 238, 665, 927
Hpy188III TCNNGA 6 cut(s) 131, 654, 902, 908, 952, 1077
Hpy8I GTNNAC 6 cut(s) 168, 206, 289, 305, 334, 532
Hpy99I CGWCG 4 cut(s) 10, 166, 204, 536
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 4 cut(s) 224, 571, 866, 1060
HpyCH4IV ACGT 5 cut(s) 8, 202, 208, 575, 673
HpyCH4V TGCA 5 cut(s) 35, 77, 366, 375, 785
HpyF10VI GCNNNNNNNGC 3 cut(s) 372, 376, 853
HpyF3I CTNAG 4 cut(s) 61, 470, 957, 1066
HpySE526I ACGT 5 cut(s) 8, 202, 208, 575, 673
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 5 cut(s) 101, 124, 370, 375, 814
HspAI GCGC 1 cut(s) 714
Ksp22I TGATCA 2 cut(s) 253, 813
KspAI GTTAAC 1 cut(s) 168
Kzo9I GATC 8 cut(s) 123, 211, 253, 346, 409, 813, 904, 922
LmnI GCTCC 2 cut(s) 677, 761
LweI GCATC 2 cut(s) 225, 778
MabI ACCWGGT 1 cut(s) 282
MaeI CTAG 1 cut(s) 668
MaeII ACGT 5 cut(s) 8, 202, 208, 575, 673
MaeIII GTNAC 5 cut(s) 131, 509, 571, 806, 985
MalI GATC 8 cut(s) 125, 213, 255, 348, 411, 815, 906, 924
MboI GATC 8 cut(s) 123, 211, 253, 346, 409, 813, 904, 922
MboII GAAGA 6 cut(s) 135, 251, 411, 896, 899, 962
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 2 cut(s) 904, 922
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 5 cut(s) 157, 327, 496, 657, 879
MlyI GAGTC 2 cut(s) 659, 815
MmeI TCCRAC 4 cut(s) 477, 643, 739, 950
MnlI CCTC 8 cut(s) 102, 125, 241, 408, 411, 490, 572, 623
Mph1103I ATGCAT 1 cut(s) 368
MseI TTAA 6 cut(s) 167, 780, 801, 836, 894, 999
MslI CAYNNNNRTG 3 cut(s) 99, 102, 624
MspI CCGG 2 cut(s) 339, 848
MspR9I CCNGG 2 cut(s) 284, 975
MunI CAATTG 1 cut(s) 879
Mva1269I GAATGC 1 cut(s) 1070
MvaI CCWGG 2 cut(s) 284, 975
MwoI GCNNNNNNNGC 3 cut(s) 372, 376, 853
NcoI CCATGG 1 cut(s) 97
NdeI CATATG 1 cut(s) 526
NdeII GATC 8 cut(s) 123, 211, 253, 346, 409, 813, 904, 922
NlaIII CATG 5 cut(s) 101, 124, 370, 375, 814
NlaIV GGNNCC 3 cut(s) 583, 763, 979
NmuCI GTSAC 3 cut(s) 131, 509, 985
NsiI ATGCAT 1 cut(s) 368
NspI RCATGY 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 99
PaeI GCATGC 1 cut(s) 370
PceI AGGCCT 1 cut(s) 797
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PctI GAATGC 1 cut(s) 1070
PfeI GAWTC 1 cut(s) 245
PleI GAGTC 2 cut(s) 658, 815
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
PpsI GAGTC 2 cut(s) 658, 815
Ppu21I YACGTR 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 282, 973
PspCI CACGTG 1 cut(s) 209
PspGI CCWGG 2 cut(s) 282, 973
PspN4I GGNNCC 3 cut(s) 583, 763, 979
PspPI GGNCC 1 cut(s) 977
PsuI RGATCY 2 cut(s) 904, 922
RsaI GTAC 3 cut(s) 266, 304, 842
RsaNI GTAC 3 cut(s) 265, 303, 841
RseI CAYNNNNRTG 3 cut(s) 99, 102, 624
SacI GAGCTC 1 cut(s) 439
SalI GTCGAC 1 cut(s) 530
SaqAI TTAA 6 cut(s) 167, 780, 801, 836, 894, 999
Sau3AI GATC 8 cut(s) 123, 211, 253, 346, 409, 813, 904, 922
Sau96I GGNCC 1 cut(s) 977
SchI GAGTC 2 cut(s) 659, 815
ScrFI CCNGG 2 cut(s) 284, 975
SduI GDGCHC 1 cut(s) 439
SexAI ACCWGGT 1 cut(s) 282
SfaNI GCATC 2 cut(s) 225, 778
SmiMI CAYNNNNRTG 3 cut(s) 99, 102, 624
SphI GCATGC 1 cut(s) 370
Sse9I AATT 5 cut(s) 157, 327, 496, 657, 879
SseBI AGGCCT 1 cut(s) 797
SsiI CCGC 2 cut(s) 27, 615
SspI AATATT 1 cut(s) 521
SspMI CTAG 1 cut(s) 668
SstI GAGCTC 1 cut(s) 439
StuI AGGCCT 1 cut(s) 797
StyD4I CCNGG 2 cut(s) 282, 973
StyI CCWWGG 2 cut(s) 97, 792
TaaI ACNGT 4 cut(s) 224, 571, 866, 1060
TaiI ACGT 5 cut(s) 11, 205, 211, 578, 676
TaqI TCGA 4 cut(s) 387, 531, 564, 901
TasI AATT 5 cut(s) 157, 327, 496, 657, 879
TatI WGTACW 2 cut(s) 264, 840
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 6 cut(s) 167, 780, 801, 836, 894, 999
Tru9I TTAA 6 cut(s) 167, 780, 801, 836, 894, 999
TscAI CASTG 2 cut(s) 574, 646
TseFI GTSAC 3 cut(s) 131, 509, 985
Tsp45I GTSAC 3 cut(s) 131, 509, 985
TspDTI ATGAA 5 cut(s) 258, 310, 411, 513, 929
TspRI CASTG 2 cut(s) 574, 646
XceI RCATGY 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 1 cut(s) 668
ZraI GACGTC 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.