Rh4BG263400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013032
Physical Location & Seq
Reverse (-)
43624877 .. 43625363
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG263400.1

Sequence Viewer

Length: 402 bp
ATGCCTGGCCAAATCCACCACCATCATCAACTGTCGCCTCAGGCTGGGCCTCTCGCCGCTCCTCGAGCAATCACCTTCAGCCATCTACCTCTTCACTCCCTCGAAATCCTCATTGTCCGTCAGTTTATCCCATCTCCGGATCCCGAAGCAGTCACTGATGGTGCTCATAGCATTAGACGCAACGTGGAAGTACACGAAGGAGATGGTAAGCGTGAGGGAGGGGTTCCAGTCGAAATTCGCGATGAGGACAATAAATCAGTAATGTTGAAGGTGGTTGACAGTTTAGAGGAGATGGGTTTTGTGATAGTGGTGGTCATGGTAGCAATGGTGGAGGAGATGGGTTCTGATATACAGGTGGCTGGTGACGGTGGTAATGGTGGCGACGGTGGAGGAGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.16

Weight (kDa)

4.79

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41750
fragaria_vesca FvH4_6g23860
prunus_persica Prupe.7G059600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0482541
rosa_laevigata RLG00000023346
rosa_multiflora Rmu_sc0002969.1_g000012 Rmu_sc0005613.1_g000004
rosa_roxburghii Rroxscaffold_6G00399180 Rroxscaffold_6G00399300
rosa_rugosa Rorug03G0196800
rosa_samantha Rh3AG248300 Rh3BG283300 Rh3CG279900 Rh3DG276200 Rh3DG276300 Rh4BG263400
rosa_wichuraiana Rw0G013130 Rw3G022360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AccII CGCG 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 1 cut(s) 57
AclWI GGATC 2 cut(s) 134, 147
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 44, 136
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 1 cut(s) 4
Alw21I GWGCWC 1 cut(s) 166
AlwI GGATC 2 cut(s) 134, 147
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 63
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 2 cut(s) 7, 47
ApoI RAATTY 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 64, 374
AvaI CYCGRG 1 cut(s) 63
AxyI CCTNAGG 1 cut(s) 39
BalI TGGCCA 1 cut(s) 9
BamHI GGATCC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 166
BccI CCATC 7 cut(s) 30, 90, 139, 152, 197, 286, 331
BciT130I CCWGG 1 cut(s) 6
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 141, 225
BmrFI CCNGG 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 136
Bse1I ACTGG 1 cut(s) 227
Bse21I CCTNAGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 136
BseBI CCWGG 1 cut(s) 6
BseLI CCNNNNNNNGG 2 cut(s) 44, 136
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 3 cut(s) 51, 302, 347
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 9, 49
BsiHKAI GWGCWC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 44, 136
BsnI GGCC 2 cut(s) 9, 49
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 166
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 139
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 1 cut(s) 57
BspANI GGCC 2 cut(s) 9, 49
BspCNI CTCAG 1 cut(s) 52
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 141, 225
BspPI GGATC 2 cut(s) 134, 147
BsrBI CCGCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 1 cut(s) 227
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 4 cut(s) 33, 281, 368, 386
Bst6I CTCTTC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 65, 177
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 4
BstUI CGCG 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 9, 49
BtgZI GCGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 153
BtuMI TCGCGA 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 316
CviJI RGCY 5 cut(s) 9, 44, 49, 81, 359
CviKI_1 RGCY 5 cut(s) 9, 44, 49, 81, 359
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 61
Eco81I CCTNAGG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 4
FaeI CATG 1 cut(s) 319
FaiI YATR 3 cut(s) 168, 317, 350
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 9, 49
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 319
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HpaII CCGG 1 cut(s) 137
HphI GGTGA 2 cut(s) 64, 374
Hpy166II GTNNAC 2 cut(s) 193, 277
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 3 cut(s) 137, 143, 239
Hpy8I GTNNAC 2 cut(s) 193, 277
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 3 cut(s) 85, 191, 262
HpyCH4III ACNGT 4 cut(s) 33, 281, 368, 386
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 177
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 319
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 18, 26, 30, 150, 240, 338, 345
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 151, 362
MalI GATC 1 cut(s) 141
MbiI CCGCTC 1 cut(s) 59
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 83
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 9
Mox20I TGGCCA 1 cut(s) 9
MroI TCCGGA 1 cut(s) 136
MscI TGGCCA 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 9
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 65, 177
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 2 cut(s) 141, 225
NmuCI GTSAC 2 cut(s) 151, 362
NruI TCGCGA 1 cut(s) 240
PaeR7I CTCGAG 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PkrI GCNGC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 141, 225
PspPI GGNCC 1 cut(s) 47
PspXI VCTCGAGB 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 139
RruI TCGCGA 1 cut(s) 240
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 1 cut(s) 166
SetI ASST 5 cut(s) 77, 91, 186, 273, 357
Sfr274I CTCGAG 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 234
SsiI CCGC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 4 cut(s) 33, 281, 368, 386
TaiI ACGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 64, 102, 231
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 59
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 2 cut(s) 151, 362
Tsp45I GTSAC 2 cut(s) 151, 362
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 160
XapI RAATTY 1 cut(s) 234
XhoI CTCGAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.