Rh3AG248300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013032
Physical Location & Seq
Forward (+)
26625808 .. 26626074
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG248300.1

Sequence Viewer

Length: 267 bp
ATGCCTGGCCAACTCCACCGCCATCGTCAGCCGCCGCCTCAAGCCGGGCCTGTCCCCGCTCCTCGACCAATCACCTTCCGCCATCTACCTCTTCCCGCCCTCGAAATCCTCGCCGTCCGTCAGCTTATCCCGTCTCCGGATCCCCAGCCAGTCGCCGGTGGTGGTCGTAGCTTTCGACGCGACGTGGAAGCACGCGAAGGAGATGGTGAGGGCGAGCGAGGGGTTCCTGTCGAAATTCGCGAGGCGGGTGAGTTTGGATGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.48

Weight (kDa)

6.83

Isoelectric Point (pI)

84.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41750
fragaria_vesca FvH4_6g23860
prunus_persica Prupe.7G059600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0482541
rosa_laevigata RLG00000023346
rosa_multiflora Rmu_sc0002969.1_g000012 Rmu_sc0005613.1_g000004
rosa_roxburghii Rroxscaffold_6G00399180 Rroxscaffold_6G00399300
rosa_rugosa Rorug03G0196800
rosa_samantha Rh3AG248300 Rh3BG283300 Rh3CG279900 Rh3DG276200 Rh3DG276300 Rh4BG263400
rosa_wichuraiana Rw0G013130 Rw3G022360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AccII CGCG 3 cut(s) 180, 195, 240
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 7 cut(s) 19, 32, 35, 57, 79, 96, 245
AclWI GGATC 2 cut(s) 134, 147
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 1 cut(s) 234
AfiI CCNNNNNNNGG 3 cut(s) 44, 136, 155
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 2 cut(s) 124, 171
AluI AGCT 2 cut(s) 124, 171
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 134, 147
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 2 cut(s) 7, 47
ApoI RAATTY 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 3 cut(s) 64, 218, 260
BalI TGGCCA 1 cut(s) 9
BamHI GGATCC 1 cut(s) 139
BccI CCATC 3 cut(s) 30, 90, 197
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 6
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 2 cut(s) 32, 35
BlsI GCNGC 2 cut(s) 33, 36
Bme1390I CCNGG 2 cut(s) 6, 46
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 141, 225
BmrFI CCNGG 2 cut(s) 6, 46
BpuEI CTTGAG 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 136, 155
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 136
BseBI CCWGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 263
BseLI CCNNNNNNNGG 3 cut(s) 44, 136, 155
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 144
Bsh1236I CGCG 3 cut(s) 180, 195, 240
BshFI GGCC 2 cut(s) 9, 49
BsiSI CCGG 3 cut(s) 45, 137, 156
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 44, 136, 155
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 2 cut(s) 9, 49
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 139
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 7 cut(s) 19, 32, 35, 57, 79, 96, 245
BspANI GGCC 2 cut(s) 9, 49
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 3 cut(s) 180, 195, 240
BspLI GGNNCC 2 cut(s) 141, 225
BspPI GGATC 2 cut(s) 134, 147
BsrBI CCGCTC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 155
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 193, 215
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 3 cut(s) 180, 195, 240
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 2 cut(s) 4, 44
BstUI CGCG 3 cut(s) 180, 195, 240
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 2 cut(s) 9, 49
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 263
BtuMI TCGCGA 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 193, 215
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 186
CviJI RGCY 7 cut(s) 9, 31, 44, 49, 124, 148, 171
CviKI_1 RGCY 7 cut(s) 9, 31, 44, 49, 124, 148, 171
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 4
Esp3I CGTCTC 1 cut(s) 138
FaqI GGGAC 1 cut(s) 38
FauI CCCGC 3 cut(s) 64, 103, 238
Fnu4HI GCNGC 2 cut(s) 32, 35
Fsp4HI GCNGC 2 cut(s) 32, 35
GluI GCNGC 2 cut(s) 32, 35
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 2 cut(s) 9, 49
HapII CCGG 3 cut(s) 45, 137, 156
HgaI GACGC 1 cut(s) 186
HpaII CCGG 3 cut(s) 45, 137, 156
HphI GGTGA 3 cut(s) 64, 218, 260
Hpy188III TCNNGA 2 cut(s) 137, 239
Hpy99I CGWCG 2 cut(s) 180, 185
HpyAV CCTTC 2 cut(s) 85, 191
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 183
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 8 cut(s) 18, 58, 63, 150, 158, 162, 169, 240
MaeII ACGT 1 cut(s) 183
MalI GATC 1 cut(s) 141
MbiI CCGCTC 1 cut(s) 59
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 83
MflI RGATCY 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 9
MnlI CCTC 8 cut(s) 48, 72, 99, 110, 119, 202, 212, 235
Mox20I TGGCCA 1 cut(s) 9
MroI TCCGGA 1 cut(s) 136
MscI TGGCCA 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 9
MspI CCGG 3 cut(s) 45, 137, 156
MspR9I CCNGG 2 cut(s) 6, 46
MvaI CCWGG 1 cut(s) 6
MvnI CGCG 3 cut(s) 180, 195, 240
MwoI GCNNNNNNNGC 1 cut(s) 177
NciI CCSGG 1 cut(s) 46
NdeII GATC 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 141, 225
NruI TCGCGA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 2 cut(s) 172, 237
PkrI GCNGC 2 cut(s) 33, 36
Psp6I CCWGG 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 141, 225
PspPI GGNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 139
RruI TCGCGA 1 cut(s) 240
SatI GCNGC 2 cut(s) 32, 35
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 6, 46
SetI ASST 5 cut(s) 77, 91, 126, 173, 186
SgrAI CRCCGGYG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 1 cut(s) 234
SsiI CCGC 7 cut(s) 19, 32, 35, 57, 79, 96, 245
StyD4I CCNGG 2 cut(s) 4, 44
TaiI ACGT 1 cut(s) 186
TaqI TCGA 4 cut(s) 64, 102, 175, 231
TasI AATT 1 cut(s) 234
TauI GCSGC 2 cut(s) 34, 37
TspGWI ACGGA 1 cut(s) 107
XapI RAATTY 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.