AT2G41760

Protein N-terminal glutamine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014502
Physical Location & Seq
Forward (+)
17421689 .. 17424371
2683 bp
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UTR
Exon/CDS
Intron
AT2G41760.1

Sequence Viewer

Length: 666 bp
ATGTCCGGCGTCACCTCGGAGCCTATTGCTATGGATGCCACTCGGTTCCAGCACACTCCTTACTACTGCGAAGAGAATGTGTATCTGCTCTGCAAGACGTTGTGCGAGAATGGTGTAGCGGAGGCAACGTGTTCTGATTTGTTTGTTGTTTTTATCTCCAATGAGAAGAAGCAGGTTCCACTTTGGCATCAGAAAGCTAGTACCAGAGCTGATGGGGTTGTACTGTGGGATTATCATGTCATCTGTGTCCAGAGGAAGAAAGAAAGTGATTCTGAGCCTTTGGTGTGGGATCTTGATTCGACTTTGCCTTTCCCTTCACCCTTAGCCTCATATGTGACTGAAACTATCCAGCCATCTTTTCAGCTTTTCGCAGAGTACCAGAGGTTCTTCCGCATTGTTCATGCTCCTCTGTTCTTTAAGCATTTCGCTTCCGATAGAAGACACATGAAAGAACCTGATGGAAGTTGGACTGCTCAACCTCCACCCTATGAACCCATTGTTGCCCAAGATGGAATCTTGCACAATTTGAGCGAGTACATTGCCATGAGCGGTGCGGATACATTGTCAAGCTTGGATCCCGAAACAGTGACAGCAGCAATTTCACAGAAACTTGGTGTTGTGGTGAGCCACACTCAGCTTCAGGATCTCTTCACCAAGCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nt_Gln_amidase

Protein Analysis

221

Amino Acids

24.97

Weight (kDa)

5.18

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nt_Gln_amidase PF09764 18 - 216 2.6e-69 N-terminal glutamine amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41760
fragaria_vesca FvH4_6g23850
malus_domestica MD12G1074200.v1.1
prunus_persica Prupe.7G059700_v2.0.a1
pyrus_communis pycom12g06400
rosa_chinensis RchiOBHm_Chr3g0482531
rosa_laevigata RLG00000023347
rosa_multiflora Rmu_sc0002969.1_g000011 Rmu_sc0005613.1_g000003
rosa_roxburghii Rroxscaffold_6G00399310
rosa_rugosa Rorug03G0196700
rosa_samantha Rh3AG248200 Rh3BG283200 Rh3CG279800 Rh3DG276100
rosa_wichuraiana Rw0G013140 Rw3G022350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AccBSI CCGCTC 1 cut(s) 549
AciI CCGC 4 cut(s) 119, 391, 549, 554
AclWI GGATC 4 cut(s) 297, 569, 582, 651
AcuI CTGAAG 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 4 cut(s) 202, 222, 377, 536
AflIII ACRYGT 1 cut(s) 128
AluBI AGCT 6 cut(s) 197, 209, 364, 570, 637, 658
AluI AGCT 6 cut(s) 197, 209, 364, 570, 637, 658
AlwI GGATC 4 cut(s) 297, 569, 582, 651
ApeKI GCWGC 1 cut(s) 593
AsuHPI GGTGA 4 cut(s) 4, 309, 634, 643
BamHI GGATCC 1 cut(s) 574
BbsI GAAGAC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 605
BccI CCATC 4 cut(s) 206, 361, 452, 503
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciVI GTATCC 1 cut(s) 550
BfaI CTAG 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 163
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 1 cut(s) 594
BlsI GCNGC 1 cut(s) 595
BmiI GGNNCC 4 cut(s) 21, 47, 177, 576
BmsI GCATC 2 cut(s) 25, 196
BpiI GAAGAC 1 cut(s) 445
BplI GAGNNNNNCTC 2 cut(s) 616, 648
Bpu10I CCTNAGC 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bse3DI GCAATG 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 2 cut(s) 264, 647
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 605
BsiSI CCGG 1 cut(s) 6
Bsp143I GATC 3 cut(s) 289, 574, 643
BspACI CCGC 4 cut(s) 119, 391, 549, 554
BspCNI CTCAG 2 cut(s) 265, 646
BspLI GGNNCC 4 cut(s) 21, 47, 177, 576
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 4 cut(s) 297, 569, 582, 651
BsrBI CCGCTC 1 cut(s) 549
BsrDI GCAATG 1 cut(s) 537
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 3 cut(s) 289, 574, 643
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 225, 586
Bst6I CTCTTC 2 cut(s) 66, 653
BstACI GRCGYC 1 cut(s) 9
BstDEI CTNAG 4 cut(s) 273, 322, 633, 663
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 3 cut(s) 292, 577, 646
BstMBI GATC 3 cut(s) 289, 574, 643
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 3 cut(s) 289, 574, 643
BstYI RGATCY 3 cut(s) 289, 574, 643
BsuI GTATCC 1 cut(s) 550
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 591
BveI ACCTGC 1 cut(s) 163
Csp6I GTAC 4 cut(s) 201, 221, 376, 535
CviAII CATG 4 cut(s) 236, 401, 445, 544
CviQI GTAC 4 cut(s) 201, 221, 376, 535
DdeI CTNAG 4 cut(s) 273, 322, 633, 663
DpnI GATC 3 cut(s) 291, 576, 645
DpnII GATC 3 cut(s) 289, 574, 643
Eam1104I CTCTTC 2 cut(s) 66, 653
EarI CTCTTC 2 cut(s) 66, 653
Eco57I CTGAAG 1 cut(s) 623
FaeI CATG 4 cut(s) 239, 404, 448, 547
FaiI YATR 8 cut(s) 32, 237, 331, 333, 402, 446, 489, 545
FatI CATG 4 cut(s) 235, 400, 444, 543
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 594
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 594
FspBI CTAG 1 cut(s) 198
GluI GCNGC 1 cut(s) 594
HapII CCGG 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 4 cut(s) 239, 404, 448, 547
HindIII AAGCTT 2 cut(s) 568, 656
HinfI GANTC 3 cut(s) 269, 296, 513
HpaII CCGG 1 cut(s) 6
HphI GGTGA 4 cut(s) 4, 309, 634, 643
Hpy188I TCNGA 5 cut(s) 19, 136, 192, 274, 433
Hpy188III TCNNGA 4 cut(s) 250, 293, 578, 641
HpyAV CCTTC 1 cut(s) 324
HpyCH4III ACNGT 2 cut(s) 225, 586
HpyCH4IV ACGT 2 cut(s) 98, 128
HpyCH4V TGCA 2 cut(s) 93, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 4 cut(s) 273, 322, 633, 663
HpySE526I ACGT 2 cut(s) 98, 128
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 4 cut(s) 239, 404, 448, 547
Kzo9I GATC 3 cut(s) 289, 574, 643
LmnI GCTCC 2 cut(s) 19, 409
LpnPI CCDG 9 cut(s) 19, 62, 158, 217, 263, 362, 392, 468, 626
Lsp1109I GCAGC 1 cut(s) 605
LweI GCATC 2 cut(s) 25, 196
MaeI CTAG 1 cut(s) 198
MaeII ACGT 2 cut(s) 98, 128
MaeIII GTNAC 3 cut(s) 10, 334, 586
MalI GATC 3 cut(s) 291, 576, 645
MbiI CCGCTC 1 cut(s) 549
MboI GATC 3 cut(s) 289, 574, 643
MboII GAAGA 6 cut(s) 83, 178, 268, 379, 450, 640
MflI RGATCY 3 cut(s) 289, 574, 643
MluCI AATT 2 cut(s) 523, 597
MmeI TCCRAC 1 cut(s) 446
MnlI CCTC 7 cut(s) 25, 115, 246, 337, 375, 417, 489
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeI CATATG 1 cut(s) 331
NdeII GATC 3 cut(s) 289, 574, 643
NlaIII CATG 4 cut(s) 239, 404, 448, 547
NlaIV GGNNCC 4 cut(s) 21, 47, 177, 576
NmuCI GTSAC 3 cut(s) 10, 334, 586
PfeI GAWTC 3 cut(s) 269, 296, 513
PkrI GCNGC 1 cut(s) 595
PspN4I GGNNCC 4 cut(s) 21, 47, 177, 576
PsrI GAACNNNNNNTAC 2 cut(s) 368, 400
PsuI RGATCY 3 cut(s) 289, 574, 643
RsaI GTAC 4 cut(s) 202, 222, 377, 536
RsaNI GTAC 4 cut(s) 201, 221, 376, 535
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 1 cut(s) 594
Sau3AI GATC 3 cut(s) 289, 574, 643
SfaNI GCATC 2 cut(s) 25, 196
SmiMI CAYNNNNRTG 1 cut(s) 542
Sse9I AATT 2 cut(s) 523, 597
SsiI CCGC 4 cut(s) 119, 391, 549, 554
SspMI CTAG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 225, 586
TaiI ACGT 2 cut(s) 101, 131
TaqI TCGA 1 cut(s) 299
TasI AATT 2 cut(s) 523, 597
TatI WGTACW 2 cut(s) 220, 534
TfiI GAWTC 3 cut(s) 269, 296, 513
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 3 cut(s) 10, 334, 586
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 3 cut(s) 10, 334, 586
TspDTI ATGAA 3 cut(s) 389, 461, 504
TspRI CASTG 1 cut(s) 591
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.