FvH4_6g23850

Protein N-terminal glutamine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014502
Physical Location & Seq
Reverse (-)
17922736 .. 17925625
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23850.t1

Sequence Viewer

Length: 693 bp
ATGACGACCTCAAAATTGGAAGCGAGCACGAGCAGTGGCTCTAGCACTGTGGACGTTTCGCAGTTCCAGCACACCCCTTTTTACTGCGAAGAGAATGTGTACTTGCTTTGCAAGGAACTGGGCACAAAGGGAATCGCGGATGCAAAAGGCTCTGATCTTTTTGTGGTTTTCATTTCTAATGAAAAGAAACAGATTCCGTTGTGGCATCAAAAGGCGAGCAACCGAGCAGATGGAGTTGTTCTCTGGGACTATCATGTCATCTGCATACAGAGAAAAGTTGGCGGAGGTGACTCACCCTTGCAGCATTTAGTGTGGGATTTGGATTCGACTCTTTCATTTCCTTGTGCTTTAGCAAGTTATGTCGCCGAAACCATCCGCCCCACATTTCAGACCTTCCCCGAATTCCAGAGGTATTTCCGGATCGCGCATGCCCCAATATTCCTCCAGTCCTTTGCATCTGATAGGAGGCACATGAAGGATCCTCTTGGAGAATGGCTTCATCAACCTCCTGTGTATGAGCCGATTGTTTCCGAAGATGGAACCGTACACAATATGCATGACTACTTTGACATCAGTGCGACAGATGTTGTGAAGGAGGCAGGCTATGATATGATCAATGCAGTTTTTACCGAAAAATTTGGTGTGGTCATAGGTGAAAATCAACTGGAGGATTTCTTTTCCCAAATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nt_Gln_amidase

Protein Analysis

231

Amino Acids

26.01

Weight (kDa)

5.08

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nt_Gln_amidase PF09764 24 - 226 4e-64 N-terminal glutamine amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41760
fragaria_vesca FvH4_6g23850
malus_domestica MD12G1074200.v1.1
prunus_persica Prupe.7G059700_v2.0.a1
pyrus_communis pycom12g06400
rosa_chinensis RchiOBHm_Chr3g0482531
rosa_laevigata RLG00000023347
rosa_multiflora Rmu_sc0002969.1_g000011 Rmu_sc0005613.1_g000003
rosa_roxburghii Rroxscaffold_6G00399310
rosa_rugosa Rorug03G0196700
rosa_samantha Rh3AG248200 Rh3BG283200 Rh3CG279800 Rh3DG276100
rosa_wichuraiana Rw0G013140 Rw3G022350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AccII CGCG 2 cut(s) 137, 425
AccIII TCCGGA 1 cut(s) 417
AciI CCGC 3 cut(s) 137, 282, 376
AclWI GGATC 3 cut(s) 428, 473, 486
AcsI RAATTY 3 cut(s) 401, 635, 684
AfaI GTAC 2 cut(s) 101, 546
Alw21I GWGCWC 1 cut(s) 29
AlwI GGATC 3 cut(s) 428, 473, 486
Aor13HI TCCGGA 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 3 cut(s) 401, 635, 684
Asp700I GAANNNNTTC 1 cut(s) 495
AspLEI GCGC 1 cut(s) 427
AsuHPI GGTGA 3 cut(s) 285, 299, 665
BaeGI GKGCMC 1 cut(s) 125
BamHI GGATCC 1 cut(s) 478
BauI CACGAG 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 313
BccI CCATC 3 cut(s) 224, 380, 530
BclI TGATCA 1 cut(s) 612
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
BmiI GGNNCC 2 cut(s) 480, 541
BmrI ACTGGG 1 cut(s) 128
BmsI GCATC 3 cut(s) 130, 214, 464
BmuI ACTGGG 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 225, 257
BpmI CTGGAG 2 cut(s) 428, 686
BsaWI WCCGGW 1 cut(s) 417
Bse1I ACTGG 3 cut(s) 123, 445, 669
BseAI TCCGGA 1 cut(s) 417
BseGI GGATG 2 cut(s) 145, 372
BseNI ACTGG 3 cut(s) 123, 445, 669
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 1 cut(s) 313
Bsh1236I CGCG 2 cut(s) 137, 425
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 29, 125
Bsp13I TCCGGA 1 cut(s) 417
Bsp143I GATC 4 cut(s) 154, 420, 478, 612
BspACI CCGC 3 cut(s) 137, 282, 376
BspEI TCCGGA 1 cut(s) 417
BspFNI CGCG 2 cut(s) 137, 425
BspLI GGNNCC 2 cut(s) 480, 541
BspPI GGATC 3 cut(s) 428, 473, 486
BsrI ACTGG 3 cut(s) 123, 445, 669
BssMI GATC 4 cut(s) 154, 420, 478, 612
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 49, 544
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 4 cut(s) 25, 217, 429, 601
BstF5I GGATG 2 cut(s) 145, 372
BstFNI CGCG 2 cut(s) 137, 425
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 4 cut(s) 157, 423, 481, 615
BstMBI GATC 4 cut(s) 154, 420, 478, 612
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 431
BstSLI GKGCMC 1 cut(s) 125
BstUI CGCG 2 cut(s) 137, 425
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
BtsCI GGATG 2 cut(s) 145, 372
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 3 cut(s) 40, 45, 580
Cac8I GCNNGC 4 cut(s) 25, 217, 429, 601
CfoI GCGC 1 cut(s) 427
Csp6I GTAC 2 cut(s) 100, 545
CviAII CATG 4 cut(s) 254, 428, 472, 557
CviJI RGCY 5 cut(s) 39, 150, 496, 520, 603
CviKI_1 RGCY 5 cut(s) 39, 150, 496, 520, 603
CviQI GTAC 2 cut(s) 100, 545
DpnI GATC 4 cut(s) 156, 422, 480, 614
DpnII GATC 4 cut(s) 154, 420, 478, 612
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EciI GGCGGA 2 cut(s) 297, 365
EcoRI GAATTC 1 cut(s) 401
EcoT22I ATGCAT 1 cut(s) 558
FaeI CATG 4 cut(s) 257, 431, 475, 560
FaqI GGGAC 1 cut(s) 260
FatI CATG 4 cut(s) 253, 427, 471, 556
FbaI TGATCA 1 cut(s) 612
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 2 cut(s) 152, 359
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 302
GsuI CTGGAG 2 cut(s) 428, 686
HapII CCGG 1 cut(s) 418
HhaI GCGC 1 cut(s) 427
Hin1II CATG 4 cut(s) 257, 431, 475, 560
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 5 cut(s) 132, 193, 290, 323, 328
HpaII CCGG 1 cut(s) 418
HphI GGTGA 3 cut(s) 285, 299, 665
Hpy166II GTNNAC 3 cut(s) 52, 100, 547
Hpy188I TCNGA 4 cut(s) 154, 390, 460, 532
Hpy188III TCNNGA 2 cut(s) 406, 418
Hpy8I GTNNAC 3 cut(s) 52, 100, 547
HpyAV CCTTC 3 cut(s) 403, 469, 586
HpyCH4III ACNGT 2 cut(s) 49, 544
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 7 cut(s) 111, 143, 264, 301, 455, 556, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 4 cut(s) 257, 431, 475, 560
HspAI GCGC 1 cut(s) 425
Kpn2I TCCGGA 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 4 cut(s) 154, 420, 478, 612
LpnPI CCDG 9 cut(s) 80, 104, 229, 419, 431, 458, 522, 585, 650
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 3 cut(s) 130, 214, 464
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 156, 422, 480, 614
MboI GATC 4 cut(s) 154, 420, 478, 612
MboII GAAGA 2 cut(s) 101, 545
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 2 cut(s) 29, 125
MluCI AATT 4 cut(s) 14, 401, 635, 684
MlyI GAGTC 2 cut(s) 284, 322
MnlI CCTC 9 cut(s) 19, 278, 402, 452, 459, 492, 516, 589, 661
Mph1103I ATGCAT 1 cut(s) 558
MroI TCCGGA 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 495
MspI CCGG 1 cut(s) 418
MvnI CGCG 2 cut(s) 137, 425
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 4 cut(s) 154, 420, 478, 612
NlaIII CATG 4 cut(s) 257, 431, 475, 560
NlaIV GGNNCC 2 cut(s) 480, 541
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 132, 193, 323
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 2 cut(s) 284, 322
PpsI GAGTC 2 cut(s) 284, 322
PspN4I GGNNCC 2 cut(s) 480, 541
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 2 cut(s) 101, 546
RsaNI GTAC 2 cut(s) 100, 545
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 4 cut(s) 154, 420, 478, 612
SchI GAGTC 2 cut(s) 284, 322
SduI GDGCHC 2 cut(s) 29, 125
SetI ASST 7 cut(s) 11, 57, 289, 395, 413, 508, 655
SfaNI GCATC 3 cut(s) 130, 214, 464
SphI GCATGC 1 cut(s) 431
Sse9I AATT 4 cut(s) 14, 401, 635, 684
SsiI CCGC 3 cut(s) 137, 282, 376
SspI AATATT 1 cut(s) 438
SspMI CTAG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 49, 544
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 326
TasI AATT 4 cut(s) 14, 401, 635, 684
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 3 cut(s) 132, 193, 323
TscAI CASTG 3 cut(s) 40, 52, 580
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 5 cut(s) 160, 195, 324, 488, 488
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 3 cut(s) 40, 52, 580
XapI RAATTY 3 cut(s) 401, 635, 684
XceI RCATGY 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.