Rh3DG276100

Protein N-terminal glutamine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014502
Physical Location & Seq
Reverse (-)
27953218 .. 27956767
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG276100.1

Sequence Viewer

Length: 555 bp
ATGACGACCTCAAAATTGGAAGCGAGCACTAGCACTGTGGACGCTTCGCAGTTCCAGCACACCCCTTTTTACTGTGAGGAGAATGTGTACTTGCTTTGCAAGGAATTGAGCAAAAAGGGAATCGCAGATGAAAAAAGCTCTGATCTTTTTGTGGTTTTGATTTCCAATGAAAAGAAACAGATACCATTGTGGCATCAAAAGGCGAGCAACCGAGCAGATGGAGTTGTTCTCTGGGATTATCATGTCATTTGCGTACAGAGAAAAGTTGGTGGAGGTGACTCACCCTCACAGCATTTAGTGTGGGATTTGGATTCAACTCTTTCGCTTCCTTGTGCTTTAGCAACTTATGTCTCTGAAACCATCCGCCCCACATTTCAGACCTTTCCTGAATTCCAGAGGTATTTCCGGATTGTGCATGCCCCAATATTCCTCCGTAATTTTGCATCTGATAGAAGGCACATGAAAGATTCTCTTGGCGAATGGCTTCATCAGCCTCCTCTATATGAGCCGATTGTTTCTGAAGGTAAATGCCAAGTTCGCATTATATTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nt_Gln_amidase

Protein Analysis

184

Amino Acids

21.13

Weight (kDa)

6.65

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nt_Gln_amidase PF09764 20 - 175 5.3e-60 N-terminal glutamine amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41760
fragaria_vesca FvH4_6g23850
malus_domestica MD12G1074200.v1.1
prunus_persica Prupe.7G059700_v2.0.a1
pyrus_communis pycom12g06400
rosa_chinensis RchiOBHm_Chr3g0482531
rosa_laevigata RLG00000023347
rosa_multiflora Rmu_sc0002969.1_g000011 Rmu_sc0005613.1_g000003
rosa_roxburghii Rroxscaffold_6G00399310
rosa_rugosa Rorug03G0196700
rosa_samantha Rh3AG248200 Rh3BG283200 Rh3CG279800 Rh3DG276100
rosa_wichuraiana Rw0G013140 Rw3G022350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 553
AccIII TCCGGA 1 cut(s) 405
AciI CCGC 1 cut(s) 364
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 2 cut(s) 89, 255
AgsI TTSAA 1 cut(s) 315
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 355
Aor13HI TCCGGA 1 cut(s) 405
ApoI RAATTY 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 273, 287
BaeI ACNNNNGTAYC 2 cut(s) 173, 206
Bbv12I GWGCWC 1 cut(s) 29
BccI CCATC 2 cut(s) 212, 368
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 1 cut(s) 30
BmsI GCATC 2 cut(s) 202, 452
BplI GAGNNNNNCTC 2 cut(s) 213, 245
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
BseAI TCCGGA 1 cut(s) 405
BseGI GGATG 1 cut(s) 360
BseRI GAGGAG 2 cut(s) 92, 486
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 405
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 364
BspEI TCCGGA 1 cut(s) 405
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 37, 74
BstC8I GCNNGC 3 cut(s) 25, 205, 417
BstF5I GGATG 1 cut(s) 360
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 55, 490, 537
BstNSI RCATGY 1 cut(s) 419
BtsCI GGATG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 3 cut(s) 25, 205, 417
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 88, 254
CviAII CATG 3 cut(s) 242, 416, 460
CviJI RGCY 4 cut(s) 138, 484, 493, 508
CviKI_1 RGCY 4 cut(s) 138, 484, 493, 508
CviQI GTAC 2 cut(s) 88, 254
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EciI GGCGGA 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 540
EcoRI GAATTC 1 cut(s) 389
FaeI CATG 3 cut(s) 245, 419, 463
FaiI YATR 8 cut(s) 243, 348, 417, 461, 502, 504, 545, 553
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FatI CATG 3 cut(s) 241, 415, 459
FokI GGATG 1 cut(s) 347
FspBI CTAG 1 cut(s) 30
HapII CCGG 1 cut(s) 406
HgaI GACGC 1 cut(s) 50
Hin1II CATG 3 cut(s) 245, 419, 463
HinfI GANTC 4 cut(s) 120, 278, 311, 467
HpaII CCGG 1 cut(s) 406
HphI GGTGA 2 cut(s) 273, 287
Hpy166II GTNNAC 2 cut(s) 40, 88
Hpy188I TCNGA 5 cut(s) 142, 355, 378, 448, 520
Hpy188III TCNNGA 3 cut(s) 386, 394, 406
Hpy8I GTNNAC 2 cut(s) 40, 88
HpyAV CCTTC 2 cut(s) 447, 515
HpyCH4III ACNGT 2 cut(s) 37, 74
HpyCH4V TGCA 3 cut(s) 99, 415, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 490, 537
Hsp92II CATG 3 cut(s) 245, 419, 463
Kpn2I TCCGGA 1 cut(s) 405
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 68, 217, 399, 407, 419
LweI GCATC 2 cut(s) 202, 452
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 4 cut(s) 14, 104, 389, 436
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 8 cut(s) 19, 70, 266, 295, 390, 440, 504, 507
MroI TCCGGA 1 cut(s) 405
MroXI GAANNNNTTC 1 cut(s) 483
MspI CCGG 1 cut(s) 406
MwoI GCNNNNNNNGC 3 cut(s) 55, 490, 537
NdeII GATC 1 cut(s) 142
NlaIII CATG 3 cut(s) 245, 419, 463
NmuCI GTSAC 1 cut(s) 275
NspI RCATGY 1 cut(s) 419
PaeI GCATGC 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 120, 311, 467
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PsiI TTATAA 1 cut(s) 553
RsaI GTAC 2 cut(s) 89, 255
RsaNI GTAC 2 cut(s) 88, 254
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 272
SduI GDGCHC 1 cut(s) 29
SetI ASST 6 cut(s) 11, 140, 277, 383, 401, 526
SfaNI GCATC 2 cut(s) 202, 452
SphI GCATGC 1 cut(s) 419
Sse9I AATT 4 cut(s) 14, 104, 389, 436
SsiI CCGC 1 cut(s) 364
SspI AATATT 1 cut(s) 426
SspMI CTAG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 37, 74
TasI AATT 4 cut(s) 14, 104, 389, 436
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 3 cut(s) 120, 311, 467
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 4 cut(s) 144, 183, 476, 476
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 1 cut(s) 40
XapI RAATTY 1 cut(s) 389
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.