Rh3CG279800

Protein N-terminal glutamine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0014502
Physical Location & Seq
Reverse (-)
28135623 .. 28139931
4309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG279800.1

Sequence Viewer

Length: 630 bp
ATGGAAAACGAAGCAGGGAAAGCGGCGAAGAAGATGACGACCTCAAAATTGGAAGCGAGCACTAGCACTGTGGACGCTTCGCAGTTCCAGCACACCCCTTTTTACTGTGAGGAGAATGTGTACTTGCTTTGCAAGGAATTGAGCAAAAAGGGAATCGCAGATGAAAAAAGCTCTGATCTTTTTGTGGTTTTGATTTCCAATGAAAAGAAACAGATACCATTGTGGCATCAAAAGGCGAGCAACCGAGCAGATGGAGTTGTTCTCTGGGATTATCACGTCATTTGCGTACAGAGAAAAGTTGGTGGAGGTGACTCACCCTCGCAGCATTTAGTGTGGGATTTGGATTCAACTCTTTCGTTTCCTTGTGCTTTAGCAACTTATGTCTCTGAAACCATCCGCCCCACATTTCAGACCTTCCCTGAATTCCAGAGGTATTTCCGGATTGTGCATGCCCCAATATTCCTCTGTAACTTTGCATCTGATAGAAGGCACATGAAAGATTCTCTTGGTGAATGGCTTCATCAACCTCCTCTATATGAGCCGATTGTTTCTGAAGGTAAATGCCAAGTTCGTATTATATTTTTATTAGGTCTGGTACTGGTTAAATCAGGATCATTCAGAATACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nt_Gln_amidase

Protein Analysis

209

Amino Acids

23.76

Weight (kDa)

7.64

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nt_Gln_amidase PF09764 31 - 186 5.5e-60 N-terminal glutamine amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41760
fragaria_vesca FvH4_6g23850
malus_domestica MD12G1074200.v1.1
prunus_persica Prupe.7G059700_v2.0.a1
pyrus_communis pycom12g06400
rosa_chinensis RchiOBHm_Chr3g0482531
rosa_laevigata RLG00000023347
rosa_multiflora Rmu_sc0002969.1_g000011 Rmu_sc0005613.1_g000003
rosa_roxburghii Rroxscaffold_6G00399310
rosa_rugosa Rorug03G0196700
rosa_samantha Rh3AG248200 Rh3BG283200 Rh3CG279800 Rh3DG276100
rosa_wichuraiana Rw0G013140 Rw3G022350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 438
AciI CCGC 2 cut(s) 23, 397
AclWI GGATC 1 cut(s) 619
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 3 cut(s) 122, 288, 597
AgsI TTSAA 1 cut(s) 348
AjiI CACGTC 1 cut(s) 277
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 388
AlwI GGATC 1 cut(s) 619
Aor13HI TCCGGA 1 cut(s) 438
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 422
Asp700I GAANNNNTTC 1 cut(s) 516
AsuHPI GGTGA 3 cut(s) 306, 320, 521
BaeI ACNNNNGTAYC 2 cut(s) 206, 239
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 245, 401
BcoDI GTCTC 1 cut(s) 388
BfaI CTAG 1 cut(s) 63
BisI GCNGC 2 cut(s) 24, 323
BlsI GCNGC 2 cut(s) 25, 324
BmgBI CACGTC 1 cut(s) 277
BmsI GCATC 2 cut(s) 235, 485
BplI GAGNNNNNCTC 2 cut(s) 246, 278
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse1I ACTGG 1 cut(s) 603
BseAI TCCGGA 1 cut(s) 438
BseGI GGATG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 603
BseRI GAGGAG 2 cut(s) 125, 519
BseXI GCAGC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 439
BsmAI GTCTC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 438
Bsp143I GATC 2 cut(s) 175, 611
BspACI CCGC 2 cut(s) 23, 397
BspEI TCCGGA 1 cut(s) 438
BspPI GGATC 1 cut(s) 619
BsrI ACTGG 1 cut(s) 603
BssMI GATC 2 cut(s) 175, 611
Bst4CI ACNGT 2 cut(s) 70, 107
BstC8I GCNNGC 3 cut(s) 58, 238, 450
BstF5I GGATG 1 cut(s) 393
BstKTI GATC 2 cut(s) 178, 614
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 2 cut(s) 175, 611
BstMWI GCNNNNNNNGC 2 cut(s) 20, 88
BstNSI RCATGY 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 334
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 3 cut(s) 58, 238, 450
CseI GACGC 1 cut(s) 83
Csp6I GTAC 3 cut(s) 121, 287, 596
CviAII CATG 2 cut(s) 449, 493
CviJI RGCY 3 cut(s) 171, 517, 541
CviKI_1 RGCY 3 cut(s) 171, 517, 541
CviQI GTAC 3 cut(s) 121, 287, 596
DpnI GATC 2 cut(s) 177, 613
DpnII GATC 2 cut(s) 175, 611
EciI GGCGGA 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 573
EcoRI GAATTC 1 cut(s) 422
FaeI CATG 2 cut(s) 452, 496
FaiI YATR 6 cut(s) 381, 450, 494, 535, 537, 578
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 2 cut(s) 448, 492
Fnu4HI GCNGC 2 cut(s) 24, 323
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 24, 323
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 24, 323
HapII CCGG 1 cut(s) 439
HgaI GACGC 1 cut(s) 83
Hin1II CATG 2 cut(s) 452, 496
HinfI GANTC 4 cut(s) 153, 311, 344, 500
HpaII CCGG 1 cut(s) 439
HphI GGTGA 3 cut(s) 306, 320, 521
Hpy166II GTNNAC 2 cut(s) 73, 121
Hpy188I TCNGA 6 cut(s) 175, 388, 411, 481, 553, 620
Hpy188III TCNNGA 3 cut(s) 427, 439, 609
Hpy8I GTNNAC 2 cut(s) 73, 121
HpyAV CCTTC 3 cut(s) 424, 480, 548
HpyCH4III ACNGT 2 cut(s) 70, 107
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 132, 448, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 88
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 2 cut(s) 452, 496
Kpn2I TCCGGA 1 cut(s) 438
Kzo9I GATC 2 cut(s) 175, 611
LpnPI CCDG 8 cut(s) 101, 250, 432, 440, 452, 578, 584, 594
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 235, 485
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 308, 467
MalI GATC 2 cut(s) 177, 613
MboI GATC 2 cut(s) 175, 611
MboII GAAGA 2 cut(s) 40, 43
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 3 cut(s) 47, 137, 422
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 8 cut(s) 52, 103, 299, 328, 423, 473, 537, 540
MroI TCCGGA 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 1 cut(s) 603
MspI CCGG 1 cut(s) 439
MwoI GCNNNNNNNGC 2 cut(s) 20, 88
NdeII GATC 2 cut(s) 175, 611
NlaIII CATG 2 cut(s) 452, 496
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 452
PaeI GCATGC 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 3 cut(s) 153, 344, 500
PkrI GCNGC 2 cut(s) 25, 324
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
RsaI GTAC 3 cut(s) 122, 288, 597
RsaNI GTAC 3 cut(s) 121, 287, 596
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 2 cut(s) 24, 323
Sau3AI GATC 2 cut(s) 175, 611
SchI GAGTC 1 cut(s) 305
SduI GDGCHC 1 cut(s) 62
SetI ASST 9 cut(s) 44, 173, 279, 310, 416, 434, 529, 559, 592
SfaNI GCATC 2 cut(s) 235, 485
SphI GCATGC 1 cut(s) 452
Sse9I AATT 3 cut(s) 47, 137, 422
SsiI CCGC 2 cut(s) 23, 397
SspI AATATT 1 cut(s) 459
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 70, 107
TaiI ACGT 1 cut(s) 279
TasI AATT 3 cut(s) 47, 137, 422
TatI WGTACW 1 cut(s) 120
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 3 cut(s) 153, 344, 500
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 177, 216, 509, 509
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 422
XceI RCATGY 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.