AT2G42310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010227
Physical Location & Seq
Forward (+)
17624993 .. 17625940
948 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42310.1

Sequence Viewer

Length: 345 bp
ATGCCGTCGACGCAGTCCTTGACCGTCGCAGCGAAGACGCTACGAAATCGGATCTTCTCTAGGTCTGGATCTACATCCGCCGGTCCGAGTCGGTGGGCGACGCCAGGTCACGAGGAGCGACCTAAGGGTTACTTTATGAACCGTACTCCTCCGGCACCAGGACAGTCGCGAAAATGGGAAGATTGGGAGCTTCCTTGTTACATCACCAGCTTCCTTACAATTGTTATCCTCGGCGTTGGACTCAATGCCAAACCTGATCTTTCAATCGAGACTTGGGCTCATCAGAAAGCTTTAGAGCGTCTTGAGATGGAGAAGCTCGCGACCGCTGGAGATTCATCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.63

Weight (kDa)

8.89

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 8
AccII CGCG 2 cut(s) 169, 320
AciI CCGC 2 cut(s) 78, 324
AclWI GGATC 2 cut(s) 59, 76
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 264
AhdI GACNNNNNGTC 1 cut(s) 105
AjnI CCWGG 2 cut(s) 103, 157
AluBI AGCT 4 cut(s) 190, 210, 290, 316
AluI AGCT 4 cut(s) 190, 210, 290, 316
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 2 cut(s) 59, 76
ApeKI GCWGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 83
AxyI CCTNAGG 1 cut(s) 123
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 280
BauI CACGAG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 2 cut(s) 105, 159
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 105, 159
Bme18I GGWCC 1 cut(s) 83
BmeRI GACNNNNNGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 2 cut(s) 105, 159
BpiI GAAGAC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse118I RCCGGY 1 cut(s) 80
Bse21I CCTNAGG 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 2 cut(s) 105, 159
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 158
BseRI GAGGAG 2 cut(s) 128, 138
BseXI GCAGC 1 cut(s) 41
Bsh1236I CGCG 2 cut(s) 169, 320
Bsh1285I CGRYCG 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 324
BsiSI CCGG 2 cut(s) 81, 152
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 3 cut(s) 51, 68, 256
Bsp68I TCGCGA 2 cut(s) 169, 320
BspACI CCGC 2 cut(s) 78, 324
BspFNI CGCG 2 cut(s) 169, 320
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 2 cut(s) 59, 76
BspT107I GGYRCC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 51, 68, 256
BssNI GRCGYC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 110
Bst2UI CCWGG 2 cut(s) 105, 159
Bst4CI ACNGT 3 cut(s) 25, 143, 165
BstACI GRCGYC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 74
BstFNI CGCG 2 cut(s) 169, 320
BstKTI GATC 3 cut(s) 54, 71, 259
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 3 cut(s) 51, 68, 256
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 105, 159
BstSCI CCNGG 2 cut(s) 103, 157
BstUI CGCG 2 cut(s) 169, 320
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 51, 68
BstYI RGATCY 2 cut(s) 51, 68
Bsu36I CCTNAGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 74
BtuMI TCGCGA 2 cut(s) 169, 320
Cac8I GCNNGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 83
CpoI CGGWCCG 1 cut(s) 83
CseI GACGC 4 cut(s) 19, 46, 109, 287
Csp6I GTAC 1 cut(s) 144
CspI CGGWCCG 1 cut(s) 83
CviJI RGCY 5 cut(s) 190, 210, 278, 290, 316
CviKI_1 RGCY 5 cut(s) 190, 210, 278, 290, 316
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 123
DpnI GATC 3 cut(s) 53, 70, 258
DpnII GATC 3 cut(s) 51, 68, 256
DriI GACNNNNNGTC 1 cut(s) 105
Eam1105I GACNNNNNGTC 1 cut(s) 105
EciI GGCGGA 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 123
EcoRII CCWGG 2 cut(s) 103, 157
EcoT38I GRGCYC 1 cut(s) 280
FaiI YATR 1 cut(s) 137
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 61
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 30
HapII CCGG 2 cut(s) 81, 152
HgaI GACGC 4 cut(s) 19, 46, 109, 287
Hin1I GRCGYC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 3 cut(s) 88, 240, 332
HpaII CCGG 2 cut(s) 81, 152
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 4 cut(s) 51, 87, 285, 340
Hpy188III TCNNGA 6 cut(s) 66, 110, 168, 268, 302, 319
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 4 cut(s) 10, 13, 29, 103
HpyCH4III ACNGT 3 cut(s) 25, 143, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 101
Kzo9I GATC 3 cut(s) 51, 68, 256
LmnI GCTCC 2 cut(s) 115, 187
Lsp1109I GCAGC 1 cut(s) 41
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 107, 128, 197
MalI GATC 3 cut(s) 53, 70, 258
MboI GATC 3 cut(s) 51, 68, 256
MboII GAAGA 3 cut(s) 46, 46, 191
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 2 cut(s) 51, 68
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 1 cut(s) 219
MlyI GAGTC 2 cut(s) 97, 234
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 3 cut(s) 106, 159, 239
MseI TTAA 1 cut(s) 343
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 2 cut(s) 81, 152
MspR9I CCNGG 2 cut(s) 105, 159
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 2 cut(s) 105, 159
MvnI CGCG 2 cut(s) 169, 320
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 3 cut(s) 51, 68, 256
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 107
NruI TCGCGA 2 cut(s) 169, 320
PfeI GAWTC 1 cut(s) 332
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 2 cut(s) 96, 234
PpsI GAGTC 2 cut(s) 96, 234
Psp6I CCWGG 2 cut(s) 103, 157
PspGI CCWGG 2 cut(s) 103, 157
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 2 cut(s) 51, 68
PsyI GACNNNGTC 1 cut(s) 13
RruI TCGCGA 2 cut(s) 169, 320
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
Rsr2I CGGWCCG 1 cut(s) 83
RsrII CGGWCCG 1 cut(s) 83
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 343
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 3 cut(s) 51, 68, 256
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 2 cut(s) 97, 234
ScrFI CCNGG 2 cut(s) 105, 159
SduI GDGCHC 1 cut(s) 280
SetI ASST 8 cut(s) 65, 109, 124, 192, 212, 256, 292, 318
SgrDI CGTCGACG 1 cut(s) 7
SinI GGWCC 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 78, 324
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 103, 157
TaaI ACNGT 3 cut(s) 25, 143, 165
TaqI TCGA 2 cut(s) 8, 267
TasI AATT 1 cut(s) 219
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 152, 324
Tth111I GACNNNGTC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.