Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010227

Physical Location & Seq

Genomic Coordinates Forward (+)

16713040 .. 16716470

Gene Structure 3431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTCTTTACCAAACAAAAAAATTTCACTTCACTCCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTGAGAAGAAAGAAAGTCATACCCCCGCGGCGCCCCCAAAAGATGCTCCGCCAGCGCCTCATCCAAACCCTCCGCACCCGCGGCGGCTCCGCCACCGGCCCCAGCCGCTGGACCAGCCCCGGCCACGAAGAACACCCCAAAGGCTACCTCTTCAACCGAACCCCTCTCCCTCCCGGTCAGTCCCGTAAATGGGAGGACTGGGAGCTCCCTTGCTACGTCACCAGCTTCCTCACCATCGTCATCCTCGGCGTCGGTCTCAATGCCAAGCCCGATCTCACCATCGAGACCTGGGCCCACCAGAAGGCCCTCGAGCGCCTCGAGATCGAGAAGGCCGCCCTCTCGCCTGAATCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.77

Weight (kDa)

10.27

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42310 AT3G57785
fragaria_vesca	FvH4_6g22990 FvH4_6g22990
malus_domestica	MD07G1000900.v1.1 MD12G1064300.v1.1 MD14G1064400.v1.1
prunus_persica	Prupe.7G069800_v2.0.a1
pyrus_communis	pycom12g05610
rosa_chinensis	RchiOBHm_Chr3g0480781
rosa_multiflora	Rmu_sc0003902.1_g000009 Rmu_sc0007944.1_g000003
rosa_roxburghii	Rroxscaffold_6G00401070
rosa_rugosa	Rorug03G0186400 Rorug07G0300800
rosa_samantha	Rh3AG237900 Rh3BG271500 Rh3CG267400 Rh3DG263500 Rh7BG426900
rosa_wichuraiana	Rw3G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccII	CGCG	2 cut(s)	91, 144
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	21
AcyI	GRCGYC	2 cut(s)	94, 312
AfiI	CCNNNNNNNGG	4 cut(s)	171, 252, 253, 364
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	268, 288
AluI	AGCT	2 cut(s)	268, 288
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	323, 341
AlwNI	CAGNNNCTG	1 cut(s)	171
Ama87I	CYCGRG	2 cut(s)	371, 380
AoxI	GGCC	5 cut(s)	160, 184, 354, 366, 393
ApaI	GGGCCC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	21
AspLEI	GCGC	3 cut(s)	96, 120, 378
AspS9I	GGNCC	5 cut(s)	161, 174, 354, 355, 367
AsuC2I	CCSGG	2 cut(s)	183, 237
AsuHPI	GGTGA	3 cut(s)	274, 286, 331
AvaI	CYCGRG	2 cut(s)	371, 380
AvaII	GGWCC	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	270, 358
Bbv12I	GWGCWC	1 cut(s)	270
BccI	CCATC	2 cut(s)	305, 350
BciT130I	CCWGG	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	183, 237
BcoDI	GTCTC	2 cut(s)	323, 341
BfoI	RGCGCY	3 cut(s)	97, 121, 379
BisI	GCNGC	5 cut(s)	92, 145, 148, 169, 396
BlsI	GCNGC	5 cut(s)	93, 146, 149, 170, 397
Bme1390I	CCNGG	3 cut(s)	183, 237, 352
Bme18I	GGWCC	1 cut(s)	174
BmeT110I	CYCGRG	2 cut(s)	371, 380
BmgT120I	GGNCC	5 cut(s)	161, 174, 354, 355, 367
BmiI	GGNNCC	4 cut(s)	95, 151, 163, 356
BmrFI	CCNGG	3 cut(s)	183, 237, 352
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	271
BpuMI	CCSGG	2 cut(s)	183, 237
BsaHI	GRCGYC	2 cut(s)	94, 312
BsaI	GGTCTC	2 cut(s)	323, 341
BsaJI	CCNNGG	5 cut(s)	89, 142, 181, 307, 351
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 252, 253, 364
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	5 cut(s)	89, 142, 181, 307, 351
BseGI	GGATG	2 cut(s)	123, 303
BseLI	CCNNNNNNNGG	4 cut(s)	171, 252, 253, 364
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	358
BseYI	CCCAGC	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	91, 144
BshFI	GGCC	5 cut(s)	162, 186, 356, 368, 395
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	2 cut(s)	371, 380
BsiSI	CCGG	3 cut(s)	159, 183, 237
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	4 cut(s)	171, 252, 253, 364
BsmAI	GTCTC	2 cut(s)	323, 341
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	5 cut(s)	162, 186, 356, 368, 395
Bso31I	GGTCTC	2 cut(s)	323, 341
BsoBI	CYCGRG	2 cut(s)	371, 380
Bsp120I	GGGCCC	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	270, 358
Bsp143I	GATC	2 cut(s)	334, 384
BspANI	GGCC	5 cut(s)	162, 186, 356, 368, 395
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	2 cut(s)	91, 144
BspLI	GGNNCC	4 cut(s)	95, 151, 163, 356
BspT107I	GGYRCC	1 cut(s)	93
BspTNI	GGTCTC	2 cut(s)	323, 341
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	5 cut(s)	89, 142, 181, 307, 351
BssMI	GATC	2 cut(s)	334, 384
BssNI	GRCGYC	2 cut(s)	94, 312
Bst2UI	CCWGG	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	2 cut(s)	94, 312
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	2 cut(s)	89, 142
BstF5I	GGATG	2 cut(s)	123, 303
BstFNI	CGCG	2 cut(s)	91, 144
BstH2I	RGCGCY	3 cut(s)	97, 121, 379
BstHHI	GCGC	3 cut(s)	96, 120, 378
BstKTI	GATC	2 cut(s)	337, 387
BstMAI	GTCTC	2 cut(s)	323, 341
BstMBI	GATC	2 cut(s)	334, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 144, 168, 177
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	181, 235, 350
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	2 cut(s)	91, 144
BsuRI	GGCC	5 cut(s)	162, 186, 356, 368, 395
BtgI	CCRYGG	2 cut(s)	89, 142
BtsCI	GGATG	2 cut(s)	123, 303
Cac8I	GCNNGC	1 cut(s)	116
CaiI	CAGNNNCTG	1 cut(s)	171
CfoI	GCGC	3 cut(s)	96, 120, 378
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	5 cut(s)	161, 174, 354, 355, 367
Cfr42I	CCGCGG	2 cut(s)	92, 145
CseI	GACGC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	65
DinI	GGCGCC	1 cut(s)	95
DpnI	GATC	2 cut(s)	336, 386
DpnII	GATC	2 cut(s)	334, 384
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	2 cut(s)	101, 142
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	270, 358
Eco31I	GGTCTC	2 cut(s)	323, 341
Eco47I	GGWCC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	268
Eco88I	CYCGRG	2 cut(s)	371, 380
EcoICRI	GAGCTC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	2 cut(s)	270, 358
EgeI	GGCGCC	1 cut(s)	95
EheI	GGCGCC	1 cut(s)	95
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	1 cut(s)	229
FauI	CCCGC	2 cut(s)	96, 149
Fnu4HI	GCNGC	5 cut(s)	92, 145, 148, 169, 396
FokI	GGATG	2 cut(s)	110, 290
FriOI	GRGCYC	2 cut(s)	270, 358
Fsp4HI	GCNGC	5 cut(s)	92, 145, 148, 169, 396
GlaI	GCGC	3 cut(s)	95, 119, 377
GluI	GCNGC	5 cut(s)	92, 145, 148, 169, 396
GsaI	CCCAGC	1 cut(s)	168
HaeII	RGCGCY	3 cut(s)	97, 121, 379
HaeIII	GGCC	5 cut(s)	162, 186, 356, 368, 395
HapII	CCGG	3 cut(s)	159, 183, 237
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	3 cut(s)	96, 120, 378
Hin1I	GRCGYC	2 cut(s)	94, 312
Hin6I	GCGC	3 cut(s)	94, 118, 376
HinP1I	GCGC	3 cut(s)	94, 118, 376
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	3 cut(s)	159, 183, 237
HphI	GGTGA	3 cut(s)	274, 286, 331
Hpy188I	TCNGA	2 cut(s)	66, 415
Hpy188III	TCNNGA	3 cut(s)	346, 382, 388
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	358, 385
HpyCH4IV	ACGT	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 144, 168, 177
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	2 cut(s)	94, 312
HspAI	GCGC	3 cut(s)	94, 118, 376
KasI	GGCGCC	1 cut(s)	93
KspI	CCGCGG	2 cut(s)	92, 145
Kzo9I	GATC	2 cut(s)	334, 384
LmnI	GCTCC	4 cut(s)	114, 155, 265, 273
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	336, 386
MboI	GATC	2 cut(s)	334, 384
MboII	GAAGA	3 cut(s)	81, 203, 205
MhlI	GDGCHC	2 cut(s)	270, 358
MluCI	AATT	1 cut(s)	21
Mly113I	GGCGCC	1 cut(s)	94
MspA1I	CMGCKG	3 cut(s)	91, 144, 171
MspI	CCGG	3 cut(s)	159, 183, 237
MspR9I	CCNGG	3 cut(s)	183, 237, 352
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	2 cut(s)	91, 144
MwoI	GCNNNNNNNGC	4 cut(s)	115, 144, 168, 177
NarI	GGCGCC	1 cut(s)	94
NciI	CCSGG	2 cut(s)	183, 237
NdeII	GATC	2 cut(s)	334, 384
NlaIV	GGNNCC	4 cut(s)	95, 151, 163, 356
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	280
PaeR7I	CTCGAG	2 cut(s)	371, 380
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	410
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	5 cut(s)	93, 146, 149, 170, 397
PluTI	GGCGCC	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	4 cut(s)	95, 151, 163, 356
PspOMI	GGGCCC	1 cut(s)	354
PspPI	GGNCC	5 cut(s)	161, 174, 354, 355, 367
PspXI	VCTCGAGB	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	270
SacII	CCGCGG	2 cut(s)	92, 145
SatI	GCNGC	5 cut(s)	92, 145, 148, 169, 396
Sau3AI	GATC	2 cut(s)	334, 384
Sau96I	GGNCC	5 cut(s)	161, 174, 354, 355, 367
ScrFI	CCNGG	3 cut(s)	183, 237, 352
SduI	GDGCHC	2 cut(s)	270, 358
SetI	ASST	5 cut(s)	213, 270, 282, 290, 353
SfaNI	GCATC	1 cut(s)	96
SfoI	GGCGCC	1 cut(s)	95
Sfr274I	CTCGAG	2 cut(s)	371, 380
Sfr303I	CCGCGG	2 cut(s)	92, 145
SgrBI	CCGCGG	2 cut(s)	92, 145
SinI	GGWCC	1 cut(s)	174
SlaI	CTCGAG	2 cut(s)	371, 380
SmlI	CTYRAG	2 cut(s)	371, 380
SmoI	CTYRAG	2 cut(s)	371, 380
Sse9I	AATT	1 cut(s)	21
SspDI	GGCGCC	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	3 cut(s)	181, 235, 350
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	4 cut(s)	345, 372, 381, 387
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	1 cut(s)	21
TauI	GCSGC	5 cut(s)	94, 147, 150, 171, 398
TfiI	GAWTC	1 cut(s)	410
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	1 cut(s)	21
XhoI	CTCGAG	2 cut(s)	371, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.