component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNase_P_p30 | PF01876 | 5 - 241 | 1.5e-51 | RNase P subunit p30 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 560, 768 |
| AccBSI | CCGCTC | 5 cut(s) | 54, 493, 1132, 1499, 2092 |
| AccII | CGCG | 4 cut(s) | 63, 147, 231, 277 |
| AccIII | TCCGGA | 1 cut(s) | 1513 |
| AclWI | GGATC | 3 cut(s) | 848, 861, 1214 |
| AcsI | RAATTY | 4 cut(s) | 638, 1413, 1542, 2045 |
| AcuI | CTGAAG | 2 cut(s) | 1454, 1686 |
| AcvI | CACGTG | 1 cut(s) | 251 |
| AcyI | GRCGYC | 3 cut(s) | 105, 132, 243 |
| AfaI | GTAC | 7 cut(s) | 24, 121, 272, 792, 922, 1095, 1878 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 307, 313, 492 |
| AjnI | CCWGG | 2 cut(s) | 306, 1858 |
| Alw21I | GWGCWC | 1 cut(s) | 93 |
| Alw26I | GTCTC | 3 cut(s) | 689, 1949, 2140 |
| AlwI | GGATC | 3 cut(s) | 848, 861, 1214 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 472, 1928 |
| Ama87I | CYCGRG | 2 cut(s) | 86, 591 |
| Aor13HI | TCCGGA | 1 cut(s) | 1513 |
| AoxI | GGCC | 4 cut(s) | 81, 315, 396, 647 |
| ApeKI | GCWGC | 5 cut(s) | 43, 466, 482, 620, 2104 |
| ApoI | RAATTY | 4 cut(s) | 638, 1413, 1542, 2045 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 337, 369, 656, 688 |
| AspLEI | GCGC | 3 cut(s) | 65, 279, 293 |
| AspS9I | GGNCC | 5 cut(s) | 49, 82, 316, 647, 1709 |
| AsuC2I | CCSGG | 1 cut(s) | 1707 |
| AsuHPI | GGTGA | 6 cut(s) | 194, 199, 274, 881, 887, 2089 |
| AvaI | CYCGRG | 2 cut(s) | 86, 591 |
| AvaII | GGWCC | 2 cut(s) | 49, 1709 |
| BamHI | GGATCC | 1 cut(s) | 853 |
| BanII | GRGCYC | 1 cut(s) | 93 |
| BbrPI | CACGTG | 1 cut(s) | 251 |
| BbsI | GAAGAC | 1 cut(s) | 350 |
| Bbv12I | GWGCWC | 1 cut(s) | 93 |
| BbvI | GCAGC | 5 cut(s) | 30, 469, 478, 607, 2091 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 284, 318 |
| BciT130I | CCWGG | 2 cut(s) | 308, 1860 |
| BcnI | CCSGG | 1 cut(s) | 1707 |
| BcoDI | GTCTC | 3 cut(s) | 689, 1949, 2140 |
| BfaI | CTAG | 7 cut(s) | 546, 615, 834, 864, 1176, 1628, 1908 |
| BfmI | CTRYAG | 2 cut(s) | 1278, 1536 |
| BisI | GCNGC | 7 cut(s) | 44, 467, 483, 621, 708, 1133, 2105 |
| BlsI | GCNGC | 7 cut(s) | 45, 468, 484, 622, 709, 1134, 2106 |
| BmcAI | AGTACT | 2 cut(s) | 792, 922 |
| Bme1390I | CCNGG | 3 cut(s) | 308, 1707, 1860 |
| Bme18I | GGWCC | 2 cut(s) | 49, 1709 |
| BmeT110I | CYCGRG | 2 cut(s) | 86, 591 |
| BmgT120I | GGNCC | 5 cut(s) | 49, 82, 316, 647, 1709 |
| BmiI | GGNNCC | 4 cut(s) | 855, 1677, 1857, 1893 |
| BmrFI | CCNGG | 3 cut(s) | 308, 1707, 1860 |
| BmrI | ACTGGG | 1 cut(s) | 1054 |
| BmsI | GCATC | 1 cut(s) | 1453 |
| BmuI | ACTGGG | 1 cut(s) | 1054 |
| BpiI | GAAGAC | 1 cut(s) | 350 |
| BpmI | CTGGAG | 4 cut(s) | 901, 1386, 1515, 1881 |
| Bpu10I | CCTNAGC | 3 cut(s) | 17, 312, 702 |
| BpuEI | CTTGAG | 1 cut(s) | 2078 |
| BpuMI | CCSGG | 1 cut(s) | 1707 |
| BsaAI | YACGTR | 1 cut(s) | 251 |
| BsaHI | GRCGYC | 3 cut(s) | 105, 132, 243 |
| BsaI | GGTCTC | 1 cut(s) | 689 |
| BsaJI | CCNNGG | 5 cut(s) | 78, 238, 306, 690, 2022 |
| BsaWI | WCCGGW | 1 cut(s) | 1513 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 140, 170, 194, 224, 1854, 1884 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 307, 313, 492 |
| Bse1I | ACTGG | 6 cut(s) | 268, 379, 918, 1060, 1369, 1498 |
| Bse3DI | GCAATG | 1 cut(s) | 674 |
| BseAI | TCCGGA | 1 cut(s) | 1513 |
| BseBI | CCWGG | 2 cut(s) | 308, 1860 |
| BseDI | CCNNGG | 5 cut(s) | 78, 238, 306, 690, 2022 |
| BseGI | GGATG | 4 cut(s) | 159, 1522, 1774, 1849 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 307, 313, 492 |
| BseMI | GCAATG | 1 cut(s) | 674 |
| BseMII | CTCAG | 5 cut(s) | 8, 326, 1049, 1172, 1616 |
| BseNI | ACTGG | 6 cut(s) | 268, 379, 918, 1060, 1369, 1498 |
| BseRI | GAGGAG | 5 cut(s) | 158, 176, 189, 202, 227 |
| BseXI | GCAGC | 5 cut(s) | 30, 469, 478, 607, 2091 |
| Bsh1236I | CGCG | 4 cut(s) | 63, 147, 231, 277 |
| Bsh1285I | CGRYCG | 2 cut(s) | 145, 151 |
| BshFI | GGCC | 4 cut(s) | 83, 317, 398, 649 |
| BsiEI | CGRYCG | 2 cut(s) | 145, 151 |
| BsiHKAI | GWGCWC | 1 cut(s) | 93 |
| BsiHKCI | CYCGRG | 2 cut(s) | 86, 591 |
| BsiSI | CCGG | 5 cut(s) | 47, 102, 327, 1514, 1707 |
| BsiWI | CGTACG | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 230 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 307, 313, 492 |
| BsmAI | GTCTC | 3 cut(s) | 689, 1949, 2140 |
| BsmFI | GGGAC | 1 cut(s) | 230 |
| BsnI | GGCC | 4 cut(s) | 83, 317, 398, 649 |
| Bso31I | GGTCTC | 1 cut(s) | 689 |
| BsoBI | CYCGRG | 2 cut(s) | 86, 591 |
| Bsp1286I | GDGCHC | 1 cut(s) | 93 |
| Bsp13I | TCCGGA | 1 cut(s) | 1513 |
| Bsp143I | GATC | 7 cut(s) | 123, 142, 391, 510, 853, 988, 1219 |
| Bsp19I | CCATGG | 1 cut(s) | 690 |
| Bsp68I | TCGCGA | 1 cut(s) | 147 |
| BspANI | GGCC | 4 cut(s) | 83, 317, 398, 649 |
| BspCNI | CTCAG | 5 cut(s) | 9, 325, 1048, 1171, 1615 |
| BspEI | TCCGGA | 1 cut(s) | 1513 |
| BspFNI | CGCG | 4 cut(s) | 63, 147, 231, 277 |
| BspHI | TCATGA | 3 cut(s) | 1288, 1417, 1951 |
| BspLI | GGNNCC | 4 cut(s) | 855, 1677, 1857, 1893 |
| BspPI | GGATC | 3 cut(s) | 848, 861, 1214 |
| BspTNI | GGTCTC | 1 cut(s) | 689 |
| BsrBI | CCGCTC | 5 cut(s) | 54, 493, 1132, 1499, 2092 |
| BsrDI | GCAATG | 1 cut(s) | 674 |
| BsrI | ACTGG | 6 cut(s) | 268, 379, 918, 1060, 1369, 1498 |
| BssECI | CCNNGG | 5 cut(s) | 78, 238, 306, 690, 2022 |
| BssMI | GATC | 7 cut(s) | 123, 142, 391, 510, 853, 988, 1219 |
| BssNI | GRCGYC | 3 cut(s) | 105, 132, 243 |
| BssT1I | CCWWGG | 3 cut(s) | 78, 690, 2022 |
| Bst2UI | CCWGG | 2 cut(s) | 308, 1860 |
| Bst4CI | ACNGT | 4 cut(s) | 119, 152, 286, 631 |
| Bst6I | CTCTTC | 2 cut(s) | 1559, 1716 |
| BstACI | GRCGYC | 3 cut(s) | 105, 132, 243 |
| BstBAI | YACGTR | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 1 cut(s) | 2109 |
| BstDEI | CTNAG | 7 cut(s) | 17, 312, 570, 702, 1035, 1158, 1602 |
| BstDSI | CCRYGG | 1 cut(s) | 690 |
| BstF5I | GGATG | 4 cut(s) | 159, 1522, 1774, 1849 |
| BstFNI | CGCG | 4 cut(s) | 63, 147, 231, 277 |
| BstHHI | GCGC | 3 cut(s) | 65, 279, 293 |
| BstKTI | GATC | 7 cut(s) | 126, 145, 394, 513, 856, 991, 1222 |
| BstMAI | GTCTC | 3 cut(s) | 689, 1949, 2140 |
| BstMBI | GATC | 7 cut(s) | 123, 142, 391, 510, 853, 988, 1219 |
| BstMCI | CGRYCG | 2 cut(s) | 145, 151 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 60, 102, 153, 228, 707, 2104 |
| BstNI | CCWGG | 2 cut(s) | 308, 1860 |
| BstNSI | RCATGY | 1 cut(s) | 2111 |
| BstSCI | CCNGG | 3 cut(s) | 306, 1705, 1858 |
| BstSFI | CTRYAG | 2 cut(s) | 1278, 1536 |
| BstUI | CGCG | 4 cut(s) | 63, 147, 231, 277 |
| BstV1I | GCAGC | 5 cut(s) | 30, 469, 478, 607, 2091 |
| BstV2I | GAAGAC | 1 cut(s) | 350 |
| BstX2I | RGATCY | 2 cut(s) | 853, 1219 |
| BstYI | RGATCY | 2 cut(s) | 853, 1219 |
| BsuRI | GGCC | 4 cut(s) | 83, 317, 398, 649 |
| BtgI | CCRYGG | 1 cut(s) | 690 |
| BtsCI | GGATG | 4 cut(s) | 159, 1522, 1774, 1849 |
| BtsI | GCAGTG | 1 cut(s) | 753 |
| BtsIMutI | CAGTG | 5 cut(s) | 753, 1362, 1430, 1491, 1695 |
| BtuMI | TCGCGA | 1 cut(s) | 147 |
| Cac8I | GCNNGC | 1 cut(s) | 2109 |
| CaiI | CAGNNNCTG | 2 cut(s) | 472, 1928 |
| CciI | TCATGA | 3 cut(s) | 1288, 1417, 1951 |
| CfoI | GCGC | 3 cut(s) | 65, 279, 293 |
| Cfr13I | GGNCC | 5 cut(s) | 49, 82, 316, 647, 1709 |
| CpoI | CGGWCCG | 1 cut(s) | 49 |
| CseI | GACGC | 3 cut(s) | 94, 121, 232 |
| Csp6I | GTAC | 7 cut(s) | 23, 120, 271, 791, 921, 1094, 1877 |
| CspI | CGGWCCG | 1 cut(s) | 49 |
| CviQI | GTAC | 7 cut(s) | 23, 120, 271, 791, 921, 1094, 1877 |
| DdeI | CTNAG | 7 cut(s) | 17, 312, 570, 702, 1035, 1158, 1602 |
| DpnI | GATC | 7 cut(s) | 125, 144, 393, 512, 855, 990, 1221 |
| DpnII | GATC | 7 cut(s) | 123, 142, 391, 510, 853, 988, 1219 |
| DraI | TTTAAA | 1 cut(s) | 1459 |
| Eam1104I | CTCTTC | 2 cut(s) | 1559, 1716 |
| EarI | CTCTTC | 2 cut(s) | 1559, 1716 |
| EciI | GGCGGA | 1 cut(s) | 254 |
| Ecl136II | GAGCTC | 1 cut(s) | 91 |
| Eco130I | CCWWGG | 3 cut(s) | 78, 690, 2022 |
| Eco147I | AGGCCT | 1 cut(s) | 398 |
| Eco24I | GRGCYC | 1 cut(s) | 93 |
| Eco31I | GGTCTC | 1 cut(s) | 689 |
| Eco32I | GATATC | 1 cut(s) | 1750 |
| Eco47I | GGWCC | 2 cut(s) | 49, 1709 |
| Eco53kI | GAGCTC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 2 cut(s) | 1454, 1686 |
| Eco72I | CACGTG | 1 cut(s) | 251 |
| Eco88I | CYCGRG | 2 cut(s) | 86, 591 |
| EcoICRI | GAGCTC | 1 cut(s) | 91 |
| EcoO109I | RGGNCCY | 2 cut(s) | 82, 316 |
| EcoRII | CCWGG | 2 cut(s) | 306, 1858 |
| EcoRV | GATATC | 1 cut(s) | 1750 |
| EcoT14I | CCWWGG | 3 cut(s) | 78, 690, 2022 |
| EcoT22I | ATGCAT | 1 cut(s) | 1977 |
| EcoT38I | GRGCYC | 1 cut(s) | 93 |
| ErhI | CCWWGG | 3 cut(s) | 78, 690, 2022 |
| FaqI | GGGAC | 1 cut(s) | 230 |
| FauI | CCCGC | 1 cut(s) | 68 |
| FauNDI | CATATG | 2 cut(s) | 517, 652 |
| Fnu4HI | GCNGC | 7 cut(s) | 44, 467, 483, 621, 708, 1133, 2105 |
| FokI | GGATG | 4 cut(s) | 146, 1529, 1781, 1856 |
| FriOI | GRGCYC | 1 cut(s) | 93 |
| Fsp4HI | GCNGC | 7 cut(s) | 44, 467, 483, 621, 708, 1133, 2105 |
| FspBI | CTAG | 7 cut(s) | 546, 615, 834, 864, 1176, 1628, 1908 |
| GlaI | GCGC | 3 cut(s) | 64, 278, 292 |
| GluI | GCNGC | 7 cut(s) | 44, 467, 483, 621, 708, 1133, 2105 |
| GsuI | CTGGAG | 4 cut(s) | 901, 1386, 1515, 1881 |
| HaeIII | GGCC | 4 cut(s) | 83, 317, 398, 649 |
| HapII | CCGG | 5 cut(s) | 47, 102, 327, 1514, 1707 |
| HgaI | GACGC | 3 cut(s) | 94, 121, 232 |
| HhaI | GCGC | 3 cut(s) | 65, 279, 293 |
| Hin1I | GRCGYC | 3 cut(s) | 105, 132, 243 |
| Hin6I | GCGC | 3 cut(s) | 63, 277, 291 |
| HinP1I | GCGC | 3 cut(s) | 63, 277, 291 |
| HincII | GTYRAC | 2 cut(s) | 985, 1198 |
| HindII | GTYRAC | 2 cut(s) | 985, 1198 |
| HinfI | GANTC | 9 cut(s) | 589, 730, 839, 1391, 1510, 1661, 1811, 1904, 2036 |
| HpaI | GTTAAC | 2 cut(s) | 985, 1198 |
| HpaII | CCGG | 5 cut(s) | 47, 102, 327, 1514, 1707 |
| HphI | GGTGA | 6 cut(s) | 194, 199, 274, 881, 887, 2089 |
| Hpy166II | GTNNAC | 3 cut(s) | 273, 985, 1198 |
| Hpy188I | TCNGA | 7 cut(s) | 142, 442, 1038, 1161, 1666, 2035, 2133 |
| Hpy8I | GTNNAC | 3 cut(s) | 273, 985, 1198 |
| Hpy99I | CGWCG | 2 cut(s) | 110, 221 |
| HpyAV | CCTTC | 8 cut(s) | 189, 490, 543, 591, 837, 866, 1233, 2119 |
| HpyCH4III | ACNGT | 4 cut(s) | 119, 152, 286, 631 |
| HpyCH4IV | ACGT | 1 cut(s) | 250 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 60, 102, 153, 228, 707, 2104 |
| HpyF3I | CTNAG | 7 cut(s) | 17, 312, 570, 702, 1035, 1158, 1602 |
| HpySE526I | ACGT | 1 cut(s) | 250 |
| Hsp92I | GRCGYC | 3 cut(s) | 105, 132, 243 |
| HspAI | GCGC | 3 cut(s) | 63, 277, 291 |
| Kpn2I | TCCGGA | 1 cut(s) | 1513 |
| KspAI | GTTAAC | 2 cut(s) | 985, 1198 |
| Kzo9I | GATC | 7 cut(s) | 123, 142, 391, 510, 853, 988, 1219 |
| LmnI | GCTCC | 6 cut(s) | 161, 1060, 1129, 1367, 1486, 1496 |
| Lsp1109I | GCAGC | 5 cut(s) | 30, 469, 478, 607, 2091 |
| LweI | GCATC | 1 cut(s) | 1453 |
| MaeI | CTAG | 7 cut(s) | 546, 615, 834, 864, 1176, 1628, 1908 |
| MaeII | ACGT | 1 cut(s) | 250 |
| MaeIII | GTNAC | 7 cut(s) | 447, 836, 911, 1017, 1441, 1531, 2077 |
| MalI | GATC | 7 cut(s) | 125, 144, 393, 512, 855, 990, 1221 |
| MbiI | CCGCTC | 5 cut(s) | 54, 493, 1132, 1499, 2092 |
| MboI | GATC | 7 cut(s) | 123, 142, 391, 510, 853, 988, 1219 |
| MboII | GAAGA | 6 cut(s) | 355, 1229, 1576, 1733, 2074, 2078 |
| MfeI | CAATTG | 1 cut(s) | 1212 |
| MflI | RGATCY | 2 cut(s) | 853, 1219 |
| MhlI | GDGCHC | 1 cut(s) | 93 |
| MlyI | GAGTC | 3 cut(s) | 583, 724, 833 |
| MmeI | TCCRAC | 1 cut(s) | 1107 |
| Mph1103I | ATGCAT | 1 cut(s) | 1977 |
| MroI | TCCGGA | 1 cut(s) | 1513 |
| MspA1I | CMGCKG | 1 cut(s) | 1388 |
| MspI | CCGG | 5 cut(s) | 47, 102, 327, 1514, 1707 |
| MspR9I | CCNGG | 3 cut(s) | 308, 1707, 1860 |
| MunI | CAATTG | 1 cut(s) | 1212 |
| MvaI | CCWGG | 2 cut(s) | 308, 1860 |
| MvnI | CGCG | 4 cut(s) | 63, 147, 231, 277 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 60, 102, 153, 228, 707, 2104 |
| NciI | CCSGG | 1 cut(s) | 1707 |
| NcoI | CCATGG | 1 cut(s) | 690 |
| NdeI | CATATG | 2 cut(s) | 517, 652 |
| NdeII | GATC | 7 cut(s) | 123, 142, 391, 510, 853, 988, 1219 |
| NlaIV | GGNNCC | 4 cut(s) | 855, 1677, 1857, 1893 |
| NmeAIII | GCCGAG | 2 cut(s) | 72, 219 |
| NmuCI | GTSAC | 4 cut(s) | 836, 1017, 1441, 2077 |
| NruI | TCGCGA | 1 cut(s) | 147 |
| NsiI | ATGCAT | 1 cut(s) | 1977 |
| NspI | RCATGY | 1 cut(s) | 2111 |
| PaeI | GCATGC | 1 cut(s) | 2111 |
| PaeR7I | CTCGAG | 2 cut(s) | 86, 591 |
| PagI | TCATGA | 3 cut(s) | 1288, 1417, 1951 |
| PceI | AGGCCT | 1 cut(s) | 398 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 18 |
| PfeI | GAWTC | 6 cut(s) | 1391, 1510, 1661, 1811, 1904, 2036 |
| Pfl23II | CGTACG | 1 cut(s) | 119 |
| PkrI | GCNGC | 7 cut(s) | 45, 468, 484, 622, 709, 1134, 2106 |
| Ple19I | CGATCG | 1 cut(s) | 145 |
| PleI | GAGTC | 3 cut(s) | 583, 724, 833 |
| PmaCI | CACGTG | 1 cut(s) | 251 |
| PmlI | CACGTG | 1 cut(s) | 251 |
| PpsI | GAGTC | 3 cut(s) | 583, 724, 833 |
| Ppu21I | YACGTR | 1 cut(s) | 251 |
| PsiI | TTATAA | 2 cut(s) | 560, 768 |
| Psp124BI | GAGCTC | 1 cut(s) | 93 |
| Psp6I | CCWGG | 2 cut(s) | 306, 1858 |
| PspCI | CACGTG | 1 cut(s) | 251 |
| PspGI | CCWGG | 2 cut(s) | 306, 1858 |
| PspLI | CGTACG | 1 cut(s) | 119 |
| PspN4I | GGNNCC | 4 cut(s) | 855, 1677, 1857, 1893 |
| PspPI | GGNCC | 5 cut(s) | 49, 82, 316, 647, 1709 |
| PspXI | VCTCGAGB | 2 cut(s) | 86, 591 |
| PstNI | CAGNNNCTG | 2 cut(s) | 472, 1928 |
| PsuI | RGATCY | 2 cut(s) | 853, 1219 |
| PvuI | CGATCG | 1 cut(s) | 145 |
| PvuII | CAGCTG | 1 cut(s) | 1388 |
| RruI | TCGCGA | 1 cut(s) | 147 |
| RsaI | GTAC | 7 cut(s) | 24, 121, 272, 792, 922, 1095, 1878 |
| RsaNI | GTAC | 7 cut(s) | 23, 120, 271, 791, 921, 1094, 1877 |
| Rsr2I | CGGWCCG | 1 cut(s) | 49 |
| RsrII | CGGWCCG | 1 cut(s) | 49 |
| SacI | GAGCTC | 1 cut(s) | 93 |
| SatI | GCNGC | 7 cut(s) | 44, 467, 483, 621, 708, 1133, 2105 |
| Sau3AI | GATC | 7 cut(s) | 123, 142, 391, 510, 853, 988, 1219 |
| Sau96I | GGNCC | 5 cut(s) | 49, 82, 316, 647, 1709 |
| ScaI | AGTACT | 2 cut(s) | 792, 922 |
| SchI | GAGTC | 3 cut(s) | 583, 724, 833 |
| ScrFI | CCNGG | 3 cut(s) | 308, 1707, 1860 |
| SduI | GDGCHC | 1 cut(s) | 93 |
| SfaNI | GCATC | 1 cut(s) | 1453 |
| SfcI | CTRYAG | 2 cut(s) | 1278, 1536 |
| Sfr274I | CTCGAG | 2 cut(s) | 86, 591 |
| SinI | GGWCC | 2 cut(s) | 49, 1709 |
| SlaI | CTCGAG | 2 cut(s) | 86, 591 |
| SmlI | CTYRAG | 3 cut(s) | 86, 591, 2093 |
| SmoI | CTYRAG | 3 cut(s) | 86, 591, 2093 |
| SphI | GCATGC | 1 cut(s) | 2111 |
| SseBI | AGGCCT | 1 cut(s) | 398 |
| SspMI | CTAG | 7 cut(s) | 546, 615, 834, 864, 1176, 1628, 1908 |
| SstI | GAGCTC | 1 cut(s) | 93 |
| StuI | AGGCCT | 1 cut(s) | 398 |
| StyD4I | CCNGG | 3 cut(s) | 306, 1705, 1858 |
| StyI | CCWWGG | 3 cut(s) | 78, 690, 2022 |
| TaaI | ACNGT | 4 cut(s) | 119, 152, 286, 631 |
| TaiI | ACGT | 1 cut(s) | 253 |
| TaqI | TCGA | 6 cut(s) | 12, 87, 390, 457, 592, 1226 |
| TaqII | GACCGA | 1 cut(s) | 671 |
| TatI | WGTACW | 5 cut(s) | 270, 790, 920, 1093, 1876 |
| TauI | GCSGC | 2 cut(s) | 710, 1135 |
| TfiI | GAWTC | 6 cut(s) | 1391, 1510, 1661, 1811, 1904, 2036 |
| TscAI | CASTG | 5 cut(s) | 753, 1369, 1437, 1498, 1702 |
| TseFI | GTSAC | 4 cut(s) | 836, 1017, 1441, 2077 |
| TseI | GCWGC | 5 cut(s) | 43, 466, 482, 620, 2104 |
| Tsp45I | GTSAC | 4 cut(s) | 836, 1017, 1441, 2077 |
| TspDTI | ATGAA | 9 cut(s) | 389, 651, 1161, 1275, 1277, 1406, 1734, 1785, 1860 |
| TspGWI | ACGGA | 2 cut(s) | 205, 1868 |
| TspRI | CASTG | 5 cut(s) | 753, 1369, 1437, 1498, 1702 |
| VpaK11BI | GGWCC | 2 cut(s) | 49, 1709 |
| XapI | RAATTY | 4 cut(s) | 638, 1413, 1542, 2045 |
| XceI | RCATGY | 1 cut(s) | 2111 |
| XhoI | CTCGAG | 2 cut(s) | 86, 591 |
| XspI | CTAG | 7 cut(s) | 546, 615, 834, 864, 1176, 1628, 1908 |
| ZrmI | AGTACT | 2 cut(s) | 792, 922 |
| Zsp2I | ATGCAT | 1 cut(s) | 1977 |