Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000938

Physical Location & Seq

Genomic Coordinates Reverse (-)

28448970 .. 28449441

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1153900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCTCCTCAGGAATCGTGAGTGTGTTCTTGAGATGATCAAGGCCAAGATCAAGGAGGCGGCTTTGAGAACCTACCCTCTGACCTACTCACCGTCATACAAGACTTTAAGCTTGGAACAAATCGCCAAGATGTTTGAGCTCTCAGAAGCACGGACTCATTGCATTGTTAGCAAAATGATGGTCAACAATGAGCTGCGTGCTAGTTGGGATCAGTCGACAAACTGCAGTGTCTTCCATGACTTTGAGCACACAAGGCTGCAAGCCCCAGCATTCCAATTAACTGAGAAGTTGTCAATCCTTGCAGAAAGTAAAGAAAGGGCAGCGCAGTTGAAGATAGGCGATGGTGGACTAGACTTGCCTTTGAGGCGTGGAGACAGTCAGAACTATGGTGCTGGAGTAGGCAGTATTCTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031369 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI eIF-3c_N

Protein Analysis

139

Amino Acids

15.53

Weight (kDa)

8.46

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	9 - 79	2.2e-12	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56150 AT3G56150
fragaria_vesca	FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_6g21351 FvH4_6g21351 FvH4_6g21360 FvH4_6g21360 FvH4_6g21360
malus_domestica	MD05G1153900.v1.1 MD08G1196100.v1.1 MD12G1050600.v1.1 MD15G1383900.v1.1
prunus_persica	Prupe.1G530000_v2.0.a1 Prupe.7G086100_v2.0.a1 Prupe.7G086100_v2.0.a1
pyrus_communis	pycom08g16830 pycom12g04510 pycom15g34350
rosa_chinensis	RchiOBHm_Chr3g0477961 RchiOBHm_Chr3g0477971 RchiOBHm_Chr7g0236891
rosa_laevigata	RLG00000001050 RLG00000023675 RLG00000023676
rosa_multiflora	Rmu_co8284977.1_g000001 Rmu_co8517169.1_g000001 Rmu_sc0005991.1_g000006 Rmu_sc0010895.1_g000001 Rmu_sc0013727.1_g000003 Rmu_sc0028822.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032460 Rroxscaffold_1G00037610 Rroxscaffold_3G00224710 Rroxscaffold_6G00403560 Rroxscaffold_6G00403570
rosa_rugosa	Rorug03G0164400 Rorug03G0164500 Rorug03G0164600 Rorug03G0164700 Rorug03G0164800 Rorug03G0164900 Rorug07G0300800
rosa_samantha	Rh2AG276900 Rh3AG215100 Rh3AG215200 Rh3BG248700 Rh3BG248800 Rh3CG242600 Rh3CG242700 Rh3DG242000 Rh3DG242200 Rh3DG242300 Rh7AG455600 Rh7BG427000 Rh7CG474300 Rh7DG443500
rosa_wichuraiana	Rw0G010140 Rw0G010150 Rw3G019380 Rw3G019390 Rw7G037820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	215
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	3 cut(s)	111, 139, 193
AluI	AGCT	3 cut(s)	111, 139, 193
Alw21I	GWGCWC	2 cut(s)	141, 249
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	3 cut(s)	193, 256, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AspLEI	GCGC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	81
AxyI	CCTNAGG	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	2 cut(s)	141, 249
BbvI	GCAGC	3 cut(s)	180, 243, 332
BccI	CCATC	2 cut(s)	172, 335
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	3 cut(s)	201, 350, 410
BfmI	CTRYAG	1 cut(s)	223
BglI	GCCNNNNNGGC	1 cut(s)	364
BisI	GCNGC	4 cut(s)	60, 194, 257, 321
BlsI	GCNGC	4 cut(s)	61, 195, 258, 322
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	50
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	3 cut(s)	22, 156, 273
BseXI	GCAGC	3 cut(s)	180, 243, 332
BseYI	CCCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	2 cut(s)	141, 249
BsmAI	GTCTC	1 cut(s)	366
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	141, 249
Bsp143I	GATC	3 cut(s)	36, 48, 208
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	3 cut(s)	21, 155, 274
BspMAI	CTGCAG	1 cut(s)	227
BspPI	GGATC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	157
BssMI	GATC	3 cut(s)	36, 48, 208
Bst4CI	ACNGT	2 cut(s)	93, 377
BstC8I	GCNNGC	2 cut(s)	198, 261
BstDEI	CTNAG	3 cut(s)	8, 142, 282
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	3 cut(s)	39, 51, 211
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	3 cut(s)	36, 48, 208
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 253, 364
BstSFI	CTRYAG	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	180, 243, 332
BstV2I	GAAGAC	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	198, 261
CfoI	GCGC	1 cut(s)	325
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	7 cut(s)	44, 62, 111, 139, 193, 256, 263
CviKI_1	RGCY	7 cut(s)	44, 62, 111, 139, 193, 256, 263
DdeI	CTNAG	3 cut(s)	8, 142, 282
DpnI	GATC	3 cut(s)	38, 50, 210
DpnII	GATC	3 cut(s)	36, 48, 208
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	1 cut(s)	239
FaiI	YATR	3 cut(s)	97, 237, 387
FatI	CATG	1 cut(s)	235
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	4 cut(s)	60, 194, 257, 321
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	4 cut(s)	60, 194, 257, 321
FspBI	CTAG	3 cut(s)	201, 350, 410
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	4 cut(s)	60, 194, 257, 321
GsaI	CCCAGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	2 cut(s)	184, 216
HindII	GTYRAC	2 cut(s)	184, 216
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	2 cut(s)	13, 154
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	3 cut(s)	184, 216, 347
Hpy188I	TCNGA	3 cut(s)	81, 145, 381
Hpy188III	TCNNGA	3 cut(s)	10, 17, 29
Hpy8I	GTNNAC	3 cut(s)	184, 216, 347
HpyCH4III	ACNGT	2 cut(s)	93, 377
HpyCH4V	TGCA	4 cut(s)	162, 225, 259, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 253, 364
HpyF3I	CTNAG	3 cut(s)	8, 142, 282
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	36, 48, 208
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	2 cut(s)	279, 378
Lsp1109I	GCAGC	3 cut(s)	180, 243, 332
MaeI	CTAG	3 cut(s)	201, 350, 410
MalI	GATC	3 cut(s)	38, 50, 210
MboI	GATC	3 cut(s)	36, 48, 208
MboII	GAAGA	2 cut(s)	223, 343
MhlI	GDGCHC	2 cut(s)	141, 249
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	4 cut(s)	17, 49, 87, 357
MseI	TTAA	2 cut(s)	107, 278
Mva1269I	GAATGC	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	168, 253, 364
NdeII	GATC	3 cut(s)	36, 48, 208
NlaIII	CATG	1 cut(s)	239
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	4 cut(s)	61, 195, 258, 322
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	107, 278
SatI	GCNGC	4 cut(s)	60, 194, 257, 321
Sau3AI	GATC	3 cut(s)	36, 48, 208
SchI	GAGTC	1 cut(s)	148
SduI	GDGCHC	2 cut(s)	141, 249
SetI	ASST	5 cut(s)	74, 86, 113, 141, 195
SfcI	CTRYAG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	3 cut(s)	201, 350, 410
SstI	GAGCTC	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	93, 377
TaqI	TCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	275
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	107, 278
Tru9I	TTAA	2 cut(s)	107, 278
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	3 cut(s)	193, 256, 320
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	3 cut(s)	201, 350, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.