Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000938

Physical Location & Seq

Genomic Coordinates Reverse (-)

46436521 .. 46444345

Gene Structure 7825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGAAAACTAGTTGAGCAAACAGAAAGTGGTGATAATGGTGCAGAGACTGAAGTTCATGACGCTACATTTGCATTTCTTATAACTCTGAGCTCGTACCTCGGGGACCTGCGTTTTTGGAGAATAGTAGTCTTTTCATTAGTTGTGTTGCTGCCATTGGTTGGGGGAGTTCAAGGAACCAAGCGGAGCTTAAATCGGCAAGGTTTCGAGCTTACCAACAAGCAGGTTTGCAATCGGCGTGGCCGAGCTCGGAGCTGCTCCATCTCCGACGTCGGCCACGAGAGGTTCCGCTCCGTTGACCTTCTGCTGGAGCTCATCAAGTCTCAATCTTGGCGAACGGGCGAAGTACGTCTCCGGTGCTCTTCAACTCCAACCCCGAAGCTGATCAAACTCGGATGTTGTTTTCAAGCATGCTTCTTCTTCTTGTTCTTGTTGTTGTTGACGAAGTGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.2

Weight (kDa)

9.41

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56150 AT3G56150
fragaria_vesca	FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_6g21351 FvH4_6g21351 FvH4_6g21360 FvH4_6g21360 FvH4_6g21360
malus_domestica	MD05G1153900.v1.1 MD08G1196100.v1.1 MD12G1050600.v1.1 MD15G1383900.v1.1
prunus_persica	Prupe.1G530000_v2.0.a1 Prupe.7G086100_v2.0.a1 Prupe.7G086100_v2.0.a1
pyrus_communis	pycom08g16830 pycom12g04510 pycom15g34350
rosa_chinensis	RchiOBHm_Chr3g0477961 RchiOBHm_Chr3g0477971 RchiOBHm_Chr7g0236891
rosa_laevigata	RLG00000001050 RLG00000023675 RLG00000023676
rosa_multiflora	Rmu_co8284977.1_g000001 Rmu_co8517169.1_g000001 Rmu_sc0005991.1_g000006 Rmu_sc0010895.1_g000001 Rmu_sc0013727.1_g000003 Rmu_sc0028822.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032460 Rroxscaffold_1G00037610 Rroxscaffold_3G00224710 Rroxscaffold_6G00403560 Rroxscaffold_6G00403570
rosa_rugosa	Rorug03G0164400 Rorug03G0164500 Rorug03G0164600 Rorug03G0164700 Rorug03G0164800 Rorug03G0164900 Rorug07G0300800
rosa_samantha	Rh2AG276900 Rh3AG215100 Rh3AG215200 Rh3BG248700 Rh3BG248800 Rh3CG242600 Rh3CG242700 Rh3DG242000 Rh3DG242200 Rh3DG242300 Rh7AG455600 Rh7BG427000 Rh7CG474300 Rh7DG443500
rosa_wichuraiana	Rw0G010140 Rw0G010150 Rw3G019380 Rw3G019390 Rw7G037820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AatII	GACGTC	1 cut(s)	273
Acc36I	ACCTGC	2 cut(s)	117, 214
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	291
AciI	CCGC	2 cut(s)	184, 289
AcoI	YGGCCR	2 cut(s)	241, 274
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	98, 348
AfiI	CCNNNNNNNGG	2 cut(s)	161, 307
AgsI	TTSAA	3 cut(s)	173, 366, 407
AhlI	ACTAGT	1 cut(s)	10
AluBI	AGCT	7 cut(s)	93, 189, 211, 248, 255, 313, 382
AluI	AGCT	7 cut(s)	93, 189, 211, 248, 255, 313, 382
Alw21I	GWGCWC	4 cut(s)	95, 250, 315, 362
Alw26I	GTCTC	3 cut(s)	41, 327, 356
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	241, 274
ApeKI	GCWGC	2 cut(s)	151, 255
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	106
BanII	GRGCYC	3 cut(s)	95, 250, 315
BauI	CACGAG	1 cut(s)	278
Bbv12I	GWGCWC	4 cut(s)	95, 250, 315, 362
BbvI	GCAGC	2 cut(s)	138, 242
BccI	CCATC	1 cut(s)	269
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	3 cut(s)	41, 327, 356
BcuI	ACTAGT	1 cut(s)	10
BfaI	CTAG	1 cut(s)	11
BfuAI	ACCTGC	2 cut(s)	117, 214
BisI	GCNGC	2 cut(s)	152, 256
BlsI	GCNGC	2 cut(s)	153, 257
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	107, 178, 287
BpmI	CTGGAG	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 307
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	2 cut(s)	161, 307
BseMII	CTCAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	138, 242
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	243, 276
BsiHKAI	GWGCWC	4 cut(s)	95, 250, 315, 362
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	161, 307
BsmAI	GTCTC	3 cut(s)	41, 327, 356
BsmBI	CGTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	243, 276
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	4 cut(s)	95, 250, 315, 362
Bsp143I	GATC	1 cut(s)	384
BspACI	CCGC	2 cut(s)	184, 289
BspANI	GGCC	2 cut(s)	243, 276
BspCNI	CTCAG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	3 cut(s)	107, 178, 287
BspMI	ACCTGC	2 cut(s)	117, 214
BspQI	GCTCTTC	1 cut(s)	367
BsrBI	CCGCTC	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	384
BssNI	GRCGYC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	367
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	401
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	3 cut(s)	41, 327, 356
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	138, 242
BsuRI	GGCC	2 cut(s)	243, 276
BtsCI	GGATG	1 cut(s)	401
BveI	ACCTGC	2 cut(s)	117, 214
Cac8I	GCNNGC	1 cut(s)	412
CaiI	CAGNNNCTG	1 cut(s)	50
CciI	TCATGA	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	97, 347
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	2 cut(s)	59, 411
CviJI	RGCY	9 cut(s)	93, 189, 211, 243, 248, 255, 276, 313, 382
CviKI_1	RGCY	9 cut(s)	93, 189, 211, 243, 248, 255, 276, 313, 382
CviQI	GTAC	2 cut(s)	97, 347
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
EaeI	YGGCCR	2 cut(s)	241, 274
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Ecl136II	GAGCTC	3 cut(s)	93, 248, 313
Eco24I	GRGCYC	3 cut(s)	95, 250, 315
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	3 cut(s)	93, 248, 313
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	3 cut(s)	93, 248, 313
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	3 cut(s)	95, 250, 315
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	2 cut(s)	62, 414
FaiI	YATR	3 cut(s)	60, 83, 412
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	58, 410
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	152, 256
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	3 cut(s)	95, 250, 315
Fsp4HI	GCNGC	2 cut(s)	152, 256
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	152, 256
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	243, 276
HapII	CCGG	1 cut(s)	355
HgaI	GACGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	62, 414
HincII	GTYRAC	2 cut(s)	298, 441
HindII	GTYRAC	2 cut(s)	298, 441
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	298, 441
Hpy188I	TCNGA	4 cut(s)	90, 252, 268, 395
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	2 cut(s)	298, 441
Hpy99I	CGWCG	2 cut(s)	272, 275
HpyAV	CCTTC	1 cut(s)	311
HpyCH4IV	ACGT	2 cut(s)	270, 349
HpyCH4V	TGCA	3 cut(s)	44, 74, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	2 cut(s)	270, 349
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	62, 414
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	384
LguI	GCTCTTC	1 cut(s)	367
LmnI	GCTCC	5 cut(s)	186, 252, 263, 296, 310
LpnPI	CCDG	4 cut(s)	122, 209, 293, 368
Lsp1109I	GCAGC	2 cut(s)	138, 242
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	270, 349
MalI	GATC	1 cut(s)	386
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	1 cut(s)	384
MboII	GAAGA	3 cut(s)	354, 409, 412
MhlI	GDGCHC	4 cut(s)	95, 250, 315, 362
MmeI	TCCRAC	2 cut(s)	291, 395
MnlI	CCTC	2 cut(s)	110, 276
MseI	TTAA	1 cut(s)	191
MspI	CCGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	2 cut(s)	62, 414
NlaIV	GGNNCC	3 cut(s)	107, 178, 287
NmeAIII	GCCGAG	1 cut(s)	269
NspI	RCATGY	1 cut(s)	414
PaeI	GCATGC	1 cut(s)	414
PagI	TCATGA	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	2 cut(s)	241, 276
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	153, 257
PpuMI	RGGWCCY	1 cut(s)	106
PsiI	TTATAA	1 cut(s)	83
Psp124BI	GAGCTC	3 cut(s)	95, 250, 315
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	107, 178, 287
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	98, 348
RsaNI	GTAC	2 cut(s)	97, 347
SacI	GAGCTC	3 cut(s)	95, 250, 315
SapI	GCTCTTC	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	2 cut(s)	152, 256
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	1 cut(s)	106
SduI	GDGCHC	4 cut(s)	95, 250, 315, 362
SinI	GGWCC	1 cut(s)	106
SpeI	ACTAGT	1 cut(s)	10
SphI	GCATGC	1 cut(s)	414
SsiI	CCGC	2 cut(s)	184, 289
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	3 cut(s)	95, 250, 315
TaiI	ACGT	2 cut(s)	273, 352
TaqI	TCGA	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseI	GCWGC	2 cut(s)	151, 255
TspDTI	ATGAA	2 cut(s)	47, 126
TspGWI	ACGGA	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	106
XceI	RCATGY	1 cut(s)	414
XspI	CTAG	1 cut(s)	11
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.