Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000938

Physical Location & Seq

Genomic Coordinates Forward (+)

26033627 .. 26040999

Gene Structure 7373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2361 bp

ATGAGTAGCAGTAATGCCAAGGCCTTGAACTCAATGAAGCAGAAACTGAAGAAGAACAATAAGCAGTATGAAGAGTTGATCAACAAGTATAAGGAGAATCCCGAGCAGAGCGAAGAGGATGAAGAAGATGAGCAGTCGGAAGAGGAGGAAGAAGATTCTGAAATTGAGGATCCTACAGATATAGCAGCTTCGGATGATGGCGAAGAGGAAGAAGATGATGCCAAGGATGGTTGGGAAAAGAAAATGAGTAAGAAGGACAAGCTCATGGATAAGCAGTTCATGAAGGATCCTCGTGAGATCACATGGGATACAATTAACAAGAAATTTAAAGAGGTTGTGGCTGCTCGGGGAAGGAAGGGAACCGGAAGGTTTGAGCAAGTTGAGCAGCTTACCTTCTTGACAAAGGTTGCTAAGACCCCTGCACAGAAGCTTGAGATTCTTTTCAGTCTTGTTTCTGCTCAGTTTGATGTCAACCCTGGTCTAAGTGGGCACATGCCTATACATGTGTGGAAAAAATGTGTGCAGAATATGCTCATTATACTTGATATTCTGGTCCAGTATCCAAACATTGCTGTAGATGACAAGGTGGAGCCTGACGAGAATGAATCCCAGAAGGGACCCGATTATAATGGGACAATCAGGGTTTGGGGGAACTTAGTGGCTTTTGTAGAAAGGATAGATACCGAGTTCTTCAAGAGCATGCAGTGCATCGACCCTCATACTCGTGAATACATTCAAAGACTTCGAGATGAGCCTATTTTTGTGGTTCTTGCTCAAAATGTTCAAGAATATTTAGAAAAAGTTGGAGATTTCAAAGCTGCTGCAAAGGTTGCCCTGAGGCGGGTTGAACTCATTTATTATAAGCCTCATGAAGTTTACGATGCTATGAGAAAACTGGCTGAGCAGATAGAAGGTGGTGATGAAGGTGAAGGCCAAGAGCCTATAGCAGTTGAGGAAAGTCGGGGTCCAGCTACATTCGTTGTAACTCCTGAGCTTGTACCGCGGAAACCAACCTTTCTGGAGAGTAGTAGGGCCTTGATGGATGTTCTGGTTTCTCTTATCTACAAGTATGGAGATGATCGCACTAAAGCTCGTGCAATGCTTTGTGACATTTACCATCATGCTCTTCTGGACAAGTTTCCTAATGCCCGTGACCTGCTGCTAATGAGTCACCTGCAAGATAGTATTCAGCACATGGACATTTCAACTCAAATACTTTTTAATAGAGCCATGGCGCAACTTGGTCTGTGTGCATTTCGAAATGGACTAATCACTGAAGGACATAGCTGCCTTTCTGAACTCTATTCAGGTGGACGAGTGAAGGAACTGCTTGCACAAGGTGTCTCCCAGAGTAGATATCATGAGAAGACTCCAGAACAGGAAAGGCTGGAGAGAAGACGACAAATGCCCTTCCATATGCACATTAACCCTGAGCTCCTCGAGGCAGTGCATTTGATATGTGCGATGCTGCTGGAAGTTCCTAATATGGCAGCAAACATCCATGATACAAAGCGCAGAGTGATTAGTAGGACATTCAGACGGTTGCTTGAAATGAATGAGAAGCAAACCTTCACAGGTCCCCCTGAAAATGTCAGGGACCATGTAATGGCAGCTACCAGGGCCCTCCGCAAAGGTGACTTTCAAAAGGCCTTTGATGTTATTAATTCCCTTCATGTCTGGAAGCTCTTAAGGAATCGGGAGAATGTTCTTCAGATGCTCAAGGCTAAGATCAAGGAGGAGGCTCTGAGGACCTACCTTTTGAGCTATTCCCGGTCTTATAAGACGTTAAGCATGGAACAACTCCCCAAGATGTTCGACCTCTCAGCGGCCCAGGCTCATAGCCTAGTTAGCAAGATGATGATCAATGACGAGCTCCATGCTAGTTGGGACCAGCCGACAAGTTGCATTGTCTTCCACGACATTGAGCACAGTAGGTTGCAGGCTCTAGCTTTCCAGTTCTCTGAGAAGCTGTCAGTCCTTGCAGAAAGCAATGAAAGGGCAACAGAGTTGAAGATAGGTGGTGGTGGGTTAGATTTACCTACAAGGCGTAGAGACAGCCAGGACTATGGTGCTGGAACAACTACTTTGAGTGGTAGGTGGCAAGAGAACATGTCTTTCACCCAAGGAAGACAGGGTGGTGCCACTGGGCGAACAGGTTATAGATCATTGGCATATGGTCATACTGCTGGAGGAGGGTATCCTAGGGACCGAACAGGTGCAGGTCAGTTCCGAGGAATGGGTCAATATACACGATATCAAGATGCTGCGCATGGAGGCTCAGGGAGGACTGGCTACCATCAGTCTGCTTCATCTGGAAGGGGATCTCAGATGGTCAGTCTTAACAGGGGTGTTCGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031369 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI eIF-3c_N

Protein Analysis

786

Amino Acids

89.47

Weight (kDa)

6.2

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-3c_N	PF05470	1 - 502	1.8e-205	Eukaryotic translation initiation factor 3 subunit 8 N-terminus
PCI	PF01399	568 - 640	6.4e-14	PCI domain
EIF3CL_C	PF26569	647 - 671	5.9e-09	EIF3CL-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56150 AT3G56150
fragaria_vesca	FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_6g21351 FvH4_6g21351 FvH4_6g21360 FvH4_6g21360 FvH4_6g21360
malus_domestica	MD05G1153900.v1.1 MD08G1196100.v1.1 MD12G1050600.v1.1 MD15G1383900.v1.1
prunus_persica	Prupe.1G530000_v2.0.a1 Prupe.7G086100_v2.0.a1 Prupe.7G086100_v2.0.a1
pyrus_communis	pycom08g16830 pycom12g04510 pycom15g34350
rosa_chinensis	RchiOBHm_Chr3g0477961 RchiOBHm_Chr3g0477971 RchiOBHm_Chr7g0236891
rosa_laevigata	RLG00000001050 RLG00000023675 RLG00000023676
rosa_multiflora	Rmu_co8284977.1_g000001 Rmu_co8517169.1_g000001 Rmu_sc0005991.1_g000006 Rmu_sc0010895.1_g000001 Rmu_sc0013727.1_g000003 Rmu_sc0028822.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032460 Rroxscaffold_1G00037610 Rroxscaffold_3G00224710 Rroxscaffold_6G00403560 Rroxscaffold_6G00403570
rosa_rugosa	Rorug03G0164400 Rorug03G0164500 Rorug03G0164600 Rorug03G0164700 Rorug03G0164800 Rorug03G0164900 Rorug07G0300800
rosa_samantha	Rh2AG276900 Rh3AG215100 Rh3AG215200 Rh3BG248700 Rh3BG248800 Rh3CG242600 Rh3CG242700 Rh3DG242000 Rh3DG242200 Rh3DG242300 Rh7AG455600 Rh7BG427000 Rh7CG474300 Rh7DG443500
rosa_wichuraiana	Rw0G010140 Rw0G010150 Rw3G019380 Rw3G019390 Rw7G037820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	627, 861, 1779
AarI	CACCTGC	1 cut(s)	1182
AbsI	CCTCGAGG	1 cut(s)	1439
Acc16I	TGCGCA	1 cut(s)	2268
Acc36I	ACCTGC	3 cut(s)	1164, 1182, 2210
AccB1I	GGYRCC	1 cut(s)	2138
AccB7I	CCANNNNNTGG	1 cut(s)	1606
AccII	CGCG	1 cut(s)	1003
AciI	CCGC	5 cut(s)	841, 1001, 1003, 1627, 1826
AclWI	GGATC	5 cut(s)	164, 177, 281, 294, 2329
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	3 cut(s)	68, 1296, 1694
AdeI	CACNNNGTG	1 cut(s)	1340
AfaI	GTAC	1 cut(s)	999
AfiI	CCNNNNNNNGG	5 cut(s)	840, 841, 1606, 1825, 2236
AflII	CTTAAG	1 cut(s)	1687
AflIII	ACRYGT	2 cut(s)	502, 2109
AjnI	CCWGG	4 cut(s)	475, 1616, 1830, 2058
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
Alw21I	GWGCWC	3 cut(s)	1437, 1875, 1929
Alw26I	GTCTC	2 cut(s)	1348, 2046
AlwI	GGATC	5 cut(s)	164, 177, 281, 294, 2329
AlwNI	CAGNNNCTG	1 cut(s)	46
Ama87I	CYCGRG	3 cut(s)	101, 345, 1439
AoxI	GGCC	6 cut(s)	21, 931, 1032, 1620, 1647, 1827
ApaI	GGGCCC	1 cut(s)	1624
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	1741, 1773
AseI	ATTAAT	1 cut(s)	1662
Asp700I	GAANNNNTTC	1 cut(s)	732
AspA2I	CCTAGG	1 cut(s)	2201
AspLEI	GCGC	3 cut(s)	1237, 1515, 2269
AsuC2I	CCSGG	1 cut(s)	1771
AsuHPI	GGTGA	5 cut(s)	929, 938, 1163, 1646, 2110
AsuII	TTCGAA	1 cut(s)	1258
AvaI	CYCGRG	3 cut(s)	101, 345, 1439
AvaII	GGWCC	8 cut(s)	553, 617, 965, 1577, 1597, 1749, 1888, 2206
AvrII	CCTAGG	1 cut(s)	2201
AxyI	CCTNAGG	1 cut(s)	836
BaeGI	GKGCMC	2 cut(s)	492, 1624
BamHI	GGATCC	2 cut(s)	169, 286
BanI	GGYRCC	1 cut(s)	2138
BanII	GRGCYC	3 cut(s)	1437, 1624, 1875
BauI	CACGAG	3 cut(s)	291, 723, 1092
BbsI	GAAGAC	4 cut(s)	1373, 1402, 1903, 2134
Bbv12I	GWGCWC	3 cut(s)	1437, 1875, 1929
BccI	CCATC	6 cut(s)	191, 221, 1033, 1125, 2304, 2323
BcgI	CGANNNNNNTGC	2 cut(s)	1859, 1893
BciT130I	CCWGG	4 cut(s)	477, 1618, 1832, 2060
BciVI	GTATCC	3 cut(s)	301, 570, 2208
BclI	TGATCA	2 cut(s)	78, 1860
BcnI	CCSGG	1 cut(s)	1771
BcoDI	GTCTC	2 cut(s)	1348, 2046
BfaI	CTAG	4 cut(s)	1844, 1881, 1946, 2202
BfmI	CTRYAG	3 cut(s)	174, 573, 942
BfrI	CTTAAG	1 cut(s)	1687
BfuAI	ACCTGC	3 cut(s)	1164, 1182, 2210
BfuI	GTATCC	3 cut(s)	301, 570, 2208
BlnI	CCTAGG	1 cut(s)	2201
BlpI	GCTNAGC	1 cut(s)	900
Bme1390I	CCNGG	5 cut(s)	477, 1618, 1771, 1832, 2060
Bme18I	GGWCC	8 cut(s)	553, 617, 965, 1577, 1597, 1749, 1888, 2206
BmeT110I	CYCGRG	3 cut(s)	101, 345, 1439
BmrFI	CCNGG	5 cut(s)	477, 1618, 1771, 1832, 2060
BmrI	ACTGGG	1 cut(s)	2154
BmsI	GCATC	6 cut(s)	208, 717, 871, 1455, 1704, 2251
BmuI	ACTGGG	1 cut(s)	2154
BpiI	GAAGAC	4 cut(s)	1373, 1402, 1903, 2134
BpmI	CTGGAG	4 cut(s)	1040, 1356, 1409, 2208
Bpu10I	CCTNAGC	3 cut(s)	990, 1431, 2278
Bpu1102I	GCTNAGC	1 cut(s)	900
Bpu14I	TTCGAA	1 cut(s)	1258
BpuEI	CTTGAG	2 cut(s)	452, 1703
BpuMI	CCSGG	1 cut(s)	1771
BsaBI	GATNNNNATC	1 cut(s)	1859
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	5 cut(s)	840, 841, 1606, 1825, 2236
Bse1I	ACTGG	5 cut(s)	556, 900, 1954, 2149, 2293
Bse21I	CCTNAGG	1 cut(s)	836
Bse3DI	GCAATG	3 cut(s)	567, 1104, 1996
Bse8I	GATNNNNATC	1 cut(s)	1859
BseBI	CCWGG	4 cut(s)	477, 1618, 1832, 2060
BseGI	GGATG	5 cut(s)	124, 199, 232, 1048, 1497
BseJI	GATNNNNATC	1 cut(s)	1859
BseLI	CCNNNNNNNGG	5 cut(s)	840, 841, 1606, 1825, 2236
BseMI	GCAATG	3 cut(s)	567, 1104, 1996
BseNI	ACTGG	5 cut(s)	556, 900, 1954, 2149, 2293
BseRI	GAGGAG	4 cut(s)	158, 1427, 1751, 2205
BseSI	GKGCMC	2 cut(s)	492, 1624
BsgI	GTGCAG	3 cut(s)	405, 542, 2238
Bsh1236I	CGCG	1 cut(s)	1003
BshFI	GGCC	6 cut(s)	23, 933, 1034, 1622, 1649, 1829
BshNI	GGYRCC	1 cut(s)	2138
BsiHKAI	GWGCWC	3 cut(s)	1437, 1875, 1929
BsiHKCI	CYCGRG	3 cut(s)	101, 345, 1439
BsiSI	CCGG	2 cut(s)	363, 1771
BslFI	GGGAC	6 cut(s)	630, 646, 1563, 1610, 1901, 2219
BslI	CCNNNNNNNGG	5 cut(s)	840, 841, 1606, 1825, 2236
BsmAI	GTCTC	2 cut(s)	1348, 2046
BsmFI	GGGAC	6 cut(s)	630, 646, 1563, 1610, 1901, 2219
BsnI	GGCC	6 cut(s)	23, 933, 1034, 1622, 1649, 1829
BsoBI	CYCGRG	3 cut(s)	101, 345, 1439
Bsp119I	TTCGAA	1 cut(s)	1258
Bsp120I	GGGCCC	1 cut(s)	1620
Bsp1286I	GDGCHC	5 cut(s)	492, 1437, 1624, 1875, 1929
Bsp143I	GATC	9 cut(s)	78, 169, 286, 297, 1078, 1728, 1860, 2162, 2321
Bsp1720I	GCTNAGC	1 cut(s)	900
Bsp19I	CCATGG	1 cut(s)	1230
BspACI	CCGC	5 cut(s)	841, 1001, 1003, 1627, 1826
BspANI	GGCC	6 cut(s)	23, 933, 1034, 1622, 1649, 1829
BspFNI	CGCG	1 cut(s)	1003
BspHI	TCATGA	3 cut(s)	279, 868, 1360
BspMI	ACCTGC	3 cut(s)	1164, 1182, 2210
BspPI	GGATC	5 cut(s)	164, 177, 281, 294, 2329
BspQI	GCTCTTC	1 cut(s)	1131
BspT104I	TTCGAA	1 cut(s)	1258
BspT107I	GGYRCC	1 cut(s)	2138
BspTI	CTTAAG	1 cut(s)	1687
BsrDI	GCAATG	3 cut(s)	567, 1104, 1996
BsrI	ACTGG	5 cut(s)	556, 900, 1954, 2149, 2293
BssMI	GATC	9 cut(s)	78, 169, 286, 297, 1078, 1728, 1860, 2162, 2321
BssSI	CACGAG	3 cut(s)	291, 723, 1092
BssT1I	CCWWGG	5 cut(s)	18, 222, 1230, 2122, 2201
Bst2BI	CACGAG	3 cut(s)	291, 723, 1092
Bst2UI	CCWGG	4 cut(s)	477, 1618, 1832, 2060
Bst4CI	ACNGT	2 cut(s)	1542, 1931
Bst6I	CTCTTC	5 cut(s)	66, 108, 135, 198, 1131
BstAFI	CTTAAG	1 cut(s)	1687
BstAPI	GCANNNNNTGC	3 cut(s)	529, 705, 830
BstBI	TTCGAA	1 cut(s)	1258
BstC8I	GCNNGC	3 cut(s)	701, 1332, 1941
BstDSI	CCRYGG	2 cut(s)	1001, 1230
BstF5I	GGATG	5 cut(s)	124, 199, 232, 1048, 1497
BstFNI	CGCG	1 cut(s)	1003
BstHHI	GCGC	3 cut(s)	1237, 1515, 2269
BstKTI	GATC	9 cut(s)	81, 172, 289, 300, 1081, 1731, 1863, 2165, 2324
BstMAI	GTCTC	2 cut(s)	1348, 2046
BstMBI	GATC	9 cut(s)	78, 169, 286, 297, 1078, 1728, 1860, 2162, 2321
BstMWI	GCNNNNNNNGC	8 cut(s)	382, 529, 705, 830, 1000, 1619, 1832, 1848
BstNI	CCWGG	4 cut(s)	477, 1618, 1832, 2060
BstNSI	RCATGY	4 cut(s)	496, 506, 703, 2113
BstSCI	CCNGG	5 cut(s)	475, 1616, 1769, 1830, 2058
BstSFI	CTRYAG	3 cut(s)	174, 573, 942
BstSLI	GKGCMC	2 cut(s)	492, 1624
BstUI	CGCG	1 cut(s)	1003
BstV2I	GAAGAC	4 cut(s)	1373, 1402, 1903, 2134
BstX2I	RGATCY	3 cut(s)	169, 286, 2321
BstXI	CCANNNNNNTGG	1 cut(s)	2066
BstYI	RGATCY	3 cut(s)	169, 286, 2321
Bsu36I	CCTNAGG	1 cut(s)	836
BsuI	GTATCC	3 cut(s)	301, 570, 2208
BsuRI	GGCC	6 cut(s)	23, 933, 1034, 1622, 1649, 1829
BtgI	CCRYGG	2 cut(s)	1001, 1230
BtgZI	GCGATG	1 cut(s)	1478
BtsCI	GGATG	5 cut(s)	124, 199, 232, 1048, 1497
BtsI	GCAGTG	2 cut(s)	710, 1452
BtsIMutI	CAGTG	4 cut(s)	710, 1272, 1452, 2142
BveI	ACCTGC	3 cut(s)	1164, 1182, 2210
Cac8I	GCNNGC	3 cut(s)	701, 1332, 1941
CaiI	CAGNNNCTG	1 cut(s)	46
CciI	TCATGA	3 cut(s)	279, 868, 1360
CfoI	GCGC	3 cut(s)	1237, 1515, 2269
Cfr42I	CCGCGG	1 cut(s)	1004
Csp6I	GTAC	1 cut(s)	998
CviQI	GTAC	1 cut(s)	998
DpnI	GATC	9 cut(s)	80, 171, 288, 299, 1080, 1730, 1862, 2164, 2323
DpnII	GATC	9 cut(s)	78, 169, 286, 297, 1078, 1728, 1860, 2162, 2321
DraI	TTTAAA	1 cut(s)	328
DraIII	CACNNNGTG	1 cut(s)	1340
Eam1104I	CTCTTC	5 cut(s)	66, 108, 135, 198, 1131
EarI	CTCTTC	5 cut(s)	66, 108, 135, 198, 1131
Ecl136II	GAGCTC	2 cut(s)	1435, 1873
Eco130I	CCWWGG	5 cut(s)	18, 222, 1230, 2122, 2201
Eco147I	AGGCCT	2 cut(s)	23, 1649
Eco24I	GRGCYC	3 cut(s)	1437, 1624, 1875
Eco32I	GATATC	2 cut(s)	1358, 2255
Eco47I	GGWCC	8 cut(s)	553, 617, 965, 1577, 1597, 1749, 1888, 2206
Eco53kI	GAGCTC	2 cut(s)	1435, 1873
Eco57I	CTGAAG	3 cut(s)	68, 1296, 1694
Eco81I	CCTNAGG	1 cut(s)	836
Eco88I	CYCGRG	3 cut(s)	101, 345, 1439
EcoICRI	GAGCTC	2 cut(s)	1435, 1873
EcoO109I	RGGNCCY	6 cut(s)	617, 1032, 1577, 1620, 1621, 1749
EcoRII	CCWGG	4 cut(s)	475, 1616, 1830, 2058
EcoRV	GATATC	2 cut(s)	1358, 2255
EcoT14I	CCWWGG	5 cut(s)	18, 222, 1230, 2122, 2201
EcoT38I	GRGCYC	3 cut(s)	1437, 1624, 1875
ErhI	CCWWGG	5 cut(s)	18, 222, 1230, 2122, 2201
FalI	AAGNNNNNCTT	2 cut(s)	1553, 1585
FaqI	GGGAC	6 cut(s)	630, 646, 1563, 1610, 1901, 2219
FauI	CCCGC	1 cut(s)	834
FauNDI	CATATG	2 cut(s)	1416, 2173
FbaI	TGATCA	2 cut(s)	78, 1860
FokI	GGATG	5 cut(s)	131, 206, 239, 1055, 1484
FriOI	GRGCYC	3 cut(s)	1437, 1624, 1875
FspBI	CTAG	4 cut(s)	1844, 1881, 1946, 2202
FspI	TGCGCA	1 cut(s)	2268
GlaI	GCGC	3 cut(s)	1236, 1514, 2268
GsuI	CTGGAG	4 cut(s)	1040, 1356, 1409, 2208
HaeIII	GGCC	6 cut(s)	23, 933, 1034, 1622, 1649, 1829
HapII	CCGG	2 cut(s)	363, 1771
HhaI	GCGC	3 cut(s)	1237, 1515, 2269
Hin6I	GCGC	3 cut(s)	1235, 1513, 2267
HinP1I	GCGC	3 cut(s)	1235, 1513, 2267
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	7 cut(s)	97, 155, 436, 605, 1168, 1369, 1693
HpaII	CCGG	2 cut(s)	363, 1771
HphI	GGTGA	5 cut(s)	929, 938, 1163, 1646, 2110
Hpy166II	GTNNAC	3 cut(s)	472, 877, 1313
Hpy8I	GTNNAC	3 cut(s)	472, 877, 1313
HpyCH4III	ACNGT	2 cut(s)	1542, 1931
HpyCH4IV	ACGT	1 cut(s)	1784
HpyF10VI	GCNNNNNNNGC	8 cut(s)	382, 529, 705, 830, 1000, 1619, 1832, 1848
HpySE526I	ACGT	1 cut(s)	1784
HspAI	GCGC	3 cut(s)	1235, 1513, 2267
KflI	GGGWCCC	1 cut(s)	617
Ksp22I	TGATCA	2 cut(s)	78, 1860
KspI	CCGCGG	1 cut(s)	1004
Kzo9I	GATC	9 cut(s)	78, 169, 286, 297, 1078, 1728, 1860, 2162, 2321
LguI	GCTCTTC	1 cut(s)	1131
LmnI	GCTCC	3 cut(s)	589, 1440, 1878
LweI	GCATC	6 cut(s)	208, 717, 871, 1455, 1704, 2251
MaeI	CTAG	4 cut(s)	1844, 1881, 1946, 2202
MaeII	ACGT	1 cut(s)	1784
MaeIII	GTNAC	5 cut(s)	982, 1106, 1151, 1169, 1634
MalI	GATC	9 cut(s)	80, 171, 288, 299, 1080, 1730, 1862, 2164, 2323
MboI	GATC	9 cut(s)	78, 169, 286, 297, 1078, 1728, 1860, 2162, 2321
MflI	RGATCY	3 cut(s)	169, 286, 2321
MhlI	GDGCHC	5 cut(s)	492, 1437, 1624, 1875, 1929
MluCI	AATT	4 cut(s)	162, 312, 323, 1663
MlyI	GAGTC	2 cut(s)	1177, 1363
MmeI	TCCRAC	2 cut(s)	117, 784
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	9 cut(s)	315, 327, 1221, 1425, 1662, 1688, 1787, 2340, 2359
MslI	CAYNNNNRTG	1 cut(s)	723
MspA1I	CMGCKG	2 cut(s)	1003, 1826
MspCI	CTTAAG	1 cut(s)	1687
MspI	CCGG	2 cut(s)	363, 1771
MspR9I	CCNGG	5 cut(s)	477, 1618, 1771, 1832, 2060
MvaI	CCWGG	4 cut(s)	477, 1618, 1832, 2060
MvnI	CGCG	1 cut(s)	1003
MwoI	GCNNNNNNNGC	8 cut(s)	382, 529, 705, 830, 1000, 1619, 1832, 1848
NciI	CCSGG	1 cut(s)	1771
NcoI	CCATGG	1 cut(s)	1230
NdeI	CATATG	2 cut(s)	1416, 2173
NdeII	GATC	9 cut(s)	78, 169, 286, 297, 1078, 1728, 1860, 2162, 2321
NmuCI	GTSAC	4 cut(s)	1106, 1151, 1169, 1634
NsbI	TGCGCA	1 cut(s)	2268
NspI	RCATGY	4 cut(s)	496, 506, 703, 2113
NspV	TTCGAA	1 cut(s)	1258
PaeI	GCATGC	1 cut(s)	703
PaeR7I	CTCGAG	1 cut(s)	1439
PagI	TCATGA	3 cut(s)	279, 868, 1360
PaqCI	CACCTGC	1 cut(s)	1182
PceI	AGGCCT	2 cut(s)	23, 1649
PciI	ACATGT	2 cut(s)	502, 2109
PciSI	GCTCTTC	1 cut(s)	1131
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	5 cut(s)	97, 155, 436, 605, 1693
PflMI	CCANNNNNTGG	1 cut(s)	1606
PleI	GAGTC	2 cut(s)	1176, 1363
PpsI	GAGTC	2 cut(s)	1176, 1363
PpuMI	RGGWCCY	3 cut(s)	617, 1577, 1749
PscI	ACATGT	2 cut(s)	502, 2109
PshBI	ATTAAT	1 cut(s)	1662
PsiI	TTATAA	3 cut(s)	627, 861, 1779
Psp124BI	GAGCTC	2 cut(s)	1437, 1875
Psp5II	RGGWCCY	3 cut(s)	617, 1577, 1749
Psp6I	CCWGG	4 cut(s)	475, 1616, 1830, 2058
PspGI	CCWGG	4 cut(s)	475, 1616, 1830, 2058
PspOMI	GGGCCC	1 cut(s)	1620
PspPPI	RGGWCCY	3 cut(s)	617, 1577, 1749
PspXI	VCTCGAGB	1 cut(s)	1439
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	3 cut(s)	169, 286, 2321
RsaI	GTAC	1 cut(s)	999
RsaNI	GTAC	1 cut(s)	998
RseI	CAYNNNNRTG	1 cut(s)	723
SacI	GAGCTC	2 cut(s)	1437, 1875
SacII	CCGCGG	1 cut(s)	1004
SapI	GCTCTTC	1 cut(s)	1131
SaqAI	TTAA	9 cut(s)	315, 327, 1221, 1425, 1662, 1688, 1787, 2340, 2359
Sau3AI	GATC	9 cut(s)	78, 169, 286, 297, 1078, 1728, 1860, 2162, 2321
SchI	GAGTC	2 cut(s)	1177, 1363
ScrFI	CCNGG	5 cut(s)	477, 1618, 1771, 1832, 2060
SduI	GDGCHC	5 cut(s)	492, 1437, 1624, 1875, 1929
SfaNI	GCATC	6 cut(s)	208, 717, 871, 1455, 1704, 2251
SfcI	CTRYAG	3 cut(s)	174, 573, 942
Sfr274I	CTCGAG	1 cut(s)	1439
Sfr303I	CCGCGG	1 cut(s)	1004
SfuI	TTCGAA	1 cut(s)	1258
SgrBI	CCGCGG	1 cut(s)	1004
SinI	GGWCC	8 cut(s)	553, 617, 965, 1577, 1597, 1749, 1888, 2206
SlaI	CTCGAG	1 cut(s)	1439
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	4 cut(s)	431, 1439, 1687, 1718
SmoI	CTYRAG	4 cut(s)	431, 1439, 1687, 1718
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	4 cut(s)	162, 312, 323, 1663
SseBI	AGGCCT	2 cut(s)	23, 1649
SsiI	CCGC	5 cut(s)	841, 1001, 1003, 1627, 1826
SspI	AATATT	1 cut(s)	791
SspMI	CTAG	4 cut(s)	1844, 1881, 1946, 2202
SstI	GAGCTC	2 cut(s)	1437, 1875
StuI	AGGCCT	2 cut(s)	23, 1649
StyD4I	CCNGG	5 cut(s)	475, 1616, 1769, 1830, 2058
StyI	CCWWGG	5 cut(s)	18, 222, 1230, 2122, 2201
TaaI	ACNGT	2 cut(s)	1542, 1931
TaiI	ACGT	1 cut(s)	1787
TaqI	TCGA	5 cut(s)	711, 745, 1258, 1440, 1815
TaqII	GACCGA	1 cut(s)	2223
TasI	AATT	4 cut(s)	162, 312, 323, 1663
TauI	GCSGC	1 cut(s)	1829
TfiI	GAWTC	5 cut(s)	97, 155, 436, 605, 1693
Tru1I	TTAA	9 cut(s)	315, 327, 1221, 1425, 1662, 1688, 1787, 2340, 2359
Tru9I	TTAA	9 cut(s)	315, 327, 1221, 1425, 1662, 1688, 1787, 2340, 2359
TscAI	CASTG	4 cut(s)	710, 1279, 1452, 2149
TseFI	GTSAC	4 cut(s)	1106, 1151, 1169, 1634
Tsp45I	GTSAC	4 cut(s)	1106, 1151, 1169, 1634
TspRI	CASTG	4 cut(s)	710, 1279, 1452, 2149
Van91I	CCANNNNNTGG	1 cut(s)	1606
Vha464I	CTTAAG	1 cut(s)	1687
VpaK11BI	GGWCC	8 cut(s)	553, 617, 965, 1577, 1597, 1749, 1888, 2206
VspI	ATTAAT	1 cut(s)	1662
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	4 cut(s)	496, 506, 703, 2113
XhoI	CTCGAG	1 cut(s)	1439
XmaJI	CCTAGG	1 cut(s)	2201
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	4 cut(s)	1844, 1881, 1946, 2202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.