Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000938

Physical Location & Seq

Genomic Coordinates Reverse (-)

23245262 .. 23245846

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG242000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCAGCAGCCAGCACCAATACAAAACTCAGGGTGATTAGTAAGACATTCCGGTGGTTGCTTGAGAAGCAAACATTCATAGGACCTCCTGAAACTGTCAGAGACCACGTAATTGCAGCTACAAGGGCCCTCTTCAAAGGTGACTTCCAAAAGGCCTTTGATGTCATCAGTTCTCTTCATGTCTGGAAGCTCCTCAGGAATCGTGAGAATGTTCTGGAGATGCTCAATGCTAATATCAAGGAGGCGGCTCTGAGGACCTACCTTTTCACCTACTATCCGTCCTATAAATCTTTAAGCATTGAGCAAGTGACCAACATGTTTGACCTCTCAGAGGCCGAGACTCATAGCATTGTTAGAAAGATGATCATGAACGAAGAGCTCCATGCTCGTTTGGACCAGCAAACACGTTGCATTGTCTTCCCCGATAATGACCGCACTAGTTTGGTGAATATACTCAAGCTGGTTGACAGGCTGTCAGTCCTCTGCGAAAATAATGAAAAGTTAGCAGAGCTGAGGATAGGTGGTGGTGTATTAAGTCTGCCTTCAGGGAGGCCGAGTTGCTATCAAACTCTTCAATCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031369 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI eIF-3c_N

Protein Analysis

194

Amino Acids

22.21

Weight (kDa)

9.01

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	70 - 141	4.3e-14	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56150 AT3G56150
fragaria_vesca	FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_6g21351 FvH4_6g21351 FvH4_6g21360 FvH4_6g21360 FvH4_6g21360
malus_domestica	MD05G1153900.v1.1 MD08G1196100.v1.1 MD12G1050600.v1.1 MD15G1383900.v1.1
prunus_persica	Prupe.1G530000_v2.0.a1 Prupe.7G086100_v2.0.a1 Prupe.7G086100_v2.0.a1
pyrus_communis	pycom08g16830 pycom12g04510 pycom15g34350
rosa_chinensis	RchiOBHm_Chr3g0477961 RchiOBHm_Chr3g0477971 RchiOBHm_Chr7g0236891
rosa_laevigata	RLG00000001050 RLG00000023675 RLG00000023676
rosa_multiflora	Rmu_co8284977.1_g000001 Rmu_co8517169.1_g000001 Rmu_sc0005991.1_g000006 Rmu_sc0010895.1_g000001 Rmu_sc0013727.1_g000003 Rmu_sc0028822.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032460 Rroxscaffold_1G00037610 Rroxscaffold_3G00224710 Rroxscaffold_6G00403560 Rroxscaffold_6G00403570
rosa_rugosa	Rorug03G0164400 Rorug03G0164500 Rorug03G0164600 Rorug03G0164700 Rorug03G0164800 Rorug03G0164900 Rorug07G0300800
rosa_samantha	Rh2AG276900 Rh3AG215100 Rh3AG215200 Rh3BG248700 Rh3BG248800 Rh3CG242600 Rh3CG242700 Rh3DG242000 Rh3DG242200 Rh3DG242300 Rh7AG455600 Rh7BG427000 Rh7CG474300 Rh7DG443500
rosa_wichuraiana	Rw0G010140 Rw0G010150 Rw3G019380 Rw3G019390 Rw7G037820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	245, 433
AcuI	CTGAAG	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	331
AflIII	ACRYGT	2 cut(s)	315, 404
AgsI	TTSAA	2 cut(s)	136, 575
AhdI	GACNNNNNGTC	1 cut(s)	472
AhlI	ACTAGT	1 cut(s)	437
AluBI	AGCT	5 cut(s)	119, 190, 379, 460, 511
AluI	AGCT	5 cut(s)	119, 190, 379, 460, 511
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	96, 332
AoxI	GGCC	4 cut(s)	126, 153, 333, 551
ApaI	GGGCCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	5, 8, 116
AspS9I	GGNCC	5 cut(s)	83, 126, 127, 255, 394
AsuHPI	GGTGA	4 cut(s)	46, 152, 259, 457
AvaII	GGWCC	3 cut(s)	83, 255, 394
AxyI	CCTNAGG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	130, 381
BbsI	GAAGAC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	512
BbvI	GCAGC	3 cut(s)	17, 20, 128
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	96, 332
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	4 cut(s)	6, 9, 117, 246
BlsI	GCNGC	4 cut(s)	7, 10, 118, 247
Bme18I	GGWCC	3 cut(s)	83, 255, 394
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmgT120I	GGNCC	5 cut(s)	83, 126, 127, 255, 394
BmiI	GGNNCC	1 cut(s)	128
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	83, 440
BsaAI	YACGTR	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse21I	CCTNAGG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	5 cut(s)	43, 208, 242, 342, 503
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	17, 20, 128
BshFI	GGCC	4 cut(s)	128, 155, 335, 553
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	2 cut(s)	96, 332
BsnI	GGCC	4 cut(s)	128, 155, 335, 553
Bso31I	GGTCTC	1 cut(s)	96
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	130, 381
Bsp143I	GATC	1 cut(s)	363
BspACI	CCGC	2 cut(s)	245, 433
BspANI	GGCC	4 cut(s)	128, 155, 335, 553
BspCNI	CTCAG	5 cut(s)	42, 207, 243, 341, 504
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	96
BssMI	GATC	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	4 cut(s)	137, 180, 369, 576
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	5 cut(s)	29, 194, 251, 328, 512
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	2 cut(s)	96, 332
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 125
BstNSI	RCATGY	1 cut(s)	319
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	17, 20, 128
BstV2I	GAAGAC	1 cut(s)	409
Bsu36I	CCTNAGG	1 cut(s)	194
BsuRI	GGCC	4 cut(s)	128, 155, 335, 553
Cac8I	GCNNGC	1 cut(s)	13
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	5 cut(s)	83, 126, 127, 255, 394
CviAII	CATG	4 cut(s)	179, 316, 367, 383
DdeI	CTNAG	5 cut(s)	29, 194, 251, 328, 512
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
DriI	GACNNNNNGTC	1 cut(s)	472
Eam1104I	CTCTTC	4 cut(s)	137, 180, 369, 576
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	4 cut(s)	137, 180, 369, 576
Ecl136II	GAGCTC	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	2 cut(s)	130, 381
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	3 cut(s)	83, 255, 394
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	528
Eco81I	CCTNAGG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	379
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	4 cut(s)	83, 126, 127, 255
EcoT38I	GRGCYC	2 cut(s)	130, 381
FaeI	CATG	4 cut(s)	182, 319, 370, 386
FaiI	YATR	8 cut(s)	80, 180, 285, 317, 345, 368, 384, 452
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FatI	CATG	4 cut(s)	178, 315, 366, 382
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	6, 9, 117, 246
FriOI	GRGCYC	2 cut(s)	130, 381
Fsp4HI	GCNGC	4 cut(s)	6, 9, 117, 246
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	4 cut(s)	6, 9, 117, 246
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	128, 155, 335, 553
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	4 cut(s)	182, 319, 370, 386
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	199, 340
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	4 cut(s)	46, 152, 259, 457
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	3 cut(s)	101, 252, 331
Hpy188III	TCNNGA	6 cut(s)	89, 184, 196, 203, 215, 367
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	1 cut(s)	552
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	108, 406
HpyCH4V	TGCA	2 cut(s)	116, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 125
HpyF3I	CTNAG	5 cut(s)	29, 194, 251, 328, 512
HpySE526I	ACGT	2 cut(s)	108, 406
Hsp92II	CATG	4 cut(s)	182, 319, 370, 386
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	1 cut(s)	363
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	195, 384
Lsp1109I	GCAGC	3 cut(s)	17, 20, 128
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	2 cut(s)	108, 406
MaeIII	GTNAC	2 cut(s)	140, 307
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	5 cut(s)	124, 167, 386, 409, 563
MhlI	GDGCHC	2 cut(s)	130, 381
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	334
MseI	TTAA	2 cut(s)	293, 533
MslI	CAYNNNNRTG	1 cut(s)	52
MspI	CCGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	67, 125
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	4 cut(s)	182, 319, 370, 386
NlaIV	GGNNCC	1 cut(s)	128
NmeAIII	GCCGAG	2 cut(s)	361, 579
NmuCI	GTSAC	2 cut(s)	140, 307
NspI	RCATGY	1 cut(s)	319
PagI	TCATGA	1 cut(s)	366
PceI	AGGCCT	1 cut(s)	155
PciI	ACATGT	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	4 cut(s)	7, 10, 118, 247
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	109
PpuMI	RGGWCCY	2 cut(s)	83, 255
PscI	ACATGT	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	381
Psp5II	RGGWCCY	2 cut(s)	83, 255
PspN4I	GGNNCC	1 cut(s)	128
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	5 cut(s)	83, 126, 127, 255, 394
PspPPI	RGGWCCY	2 cut(s)	83, 255
RseI	CAYNNNNRTG	1 cut(s)	52
SacI	GAGCTC	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	293, 533
SatI	GCNGC	4 cut(s)	6, 9, 117, 246
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	5 cut(s)	83, 126, 127, 255, 394
SchI	GAGTC	1 cut(s)	334
SduI	GDGCHC	2 cut(s)	130, 381
SfaNI	GCATC	1 cut(s)	210
SinI	GGWCC	3 cut(s)	83, 255, 394
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	2 cut(s)	62, 455
SmoI	CTYRAG	2 cut(s)	62, 455
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	1 cut(s)	111
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	2 cut(s)	245, 433
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	2 cut(s)	111, 409
TasI	AATT	1 cut(s)	111
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	293, 533
Tru9I	TTAA	2 cut(s)	293, 533
TseFI	GTSAC	2 cut(s)	140, 307
TseI	GCWGC	3 cut(s)	5, 8, 116
Tsp45I	GTSAC	2 cut(s)	140, 307
TspDTI	ATGAA	4 cut(s)	67, 167, 383, 510
TspGWI	ACGGA	1 cut(s)	267
VpaK11BI	GGWCC	3 cut(s)	83, 255, 394
XagI	CCTNNNNNAGG	1 cut(s)	329
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.