Rmu_sc0028822.1_g000002

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028822.1
Physical Location & Seq
Reverse (-)
2428 .. 4927
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028822.1_g000002.1.cds

Sequence Viewer

Length: 1593 bp
atgttcttggttcttgctcaaaatgttcaagaatatttagaacgagtcaaggatttcaaagctgctgcaaaggtagccctaaggcgtgttgaacttatctattataagccacaggaagtttatgatgccatgagaaaattggctgagcagacaggagaagatggtgaaggcctggatcctaaactggaggaaactcgtggtccatctgcatttattgtagtgcctgagcttgttccccgcaaacctaccttttcagagagtagcaggaccatgatggatattctggtttccctcatttacaagtatggggatgagaggactaaagctcgtgcaatgctatgtgatatctatcaccatgctctgctggatgagttttccacttcccgtgacttgctgctaatgagtcacctgcaggataacattcagcatatggacatctcgacccagatactttataatagagccatggcacaacttggtctctgtgcatttcggcttggattgatcactgaaggacatagctgcctttctgaactatattctggtggaagagtaaaggagttgcttgcacaaggtgtctcacaaagtagatatcatgagaaaactccagaacaggaaaggttggagaggagacgacaaatgccttaccatatgcacattaaccctgagctcttggaggcagtgcatctgatatgtgccatgctgctggaagtgcctaacatggcagctaacatctttgatgcaaagcgaagattgattagtaagacattcaggcggttgcttgagattagcgagaagcaaactttcacagggccccctgaaaatgtcagggaccatgtaatggcagcaaccagggcccttgtcaagggtgacttccaaaaggcttttgatgtcatcaattctcttgatgtttggaagcttctgaagaatcgtgagaatgttctagagatgctcaagtgtaagatcaaggaagaggctctgaggacctacctctttaccttttcctcgtcctataagactctcagcttggaacaagttgccatgatgtttgacctttcagaggcgcagactcatagcattgtgagcaagatgatgatcaatgaagagctccttgcaagctgggaccaaccaacacgttgcattgttttccatgacgtagcccacagtaggttgcaggccttagctttccagttgactgagaagttgtcaatccttgcagaaagcaatgaaagagctacagaagcaaggataggtggcggtggattagatctgcctcaaaagcgtagagacaaccaggactatgctgctgggggtggtggcagatggcaagacaacaatctgtctttcaatcaaaggcaaggaggtggctctgggcgtacaggatataacagcggagggagacaatatggccaagctgctggaggcgggtattctagagaccgcacaggtcagtccaggggaactggtcagaacactcgatatcaagatgctgcatatgctggctctgggaggactggctaccagacagctgcaaggggatctcaggatacttcatctcgcatggtcaatctacatagggggcttcgcgcctaa

Protein Analysis

530

Amino Acids

59.9

Weight (kDa)

8.8

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 105, 456
AarI CACCTGC 1 cut(s) 417
Acc36I ACCTGC 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 841
AccII CGCG 1 cut(s) 1587
AciI CCGC 6 cut(s) 238, 775, 1257, 1392, 1425, 1441
AclWI GGATC 3 cut(s) 170, 183, 1546
AcoI YGGCCR 1 cut(s) 1408
AcuI CTGAAG 2 cut(s) 531, 944
AdeI CACNNNGTG 1 cut(s) 575
AfaI GTAC 1 cut(s) 1378
AfiI CCNNNNNNNGG 4 cut(s) 841, 865, 1060, 1167
AflIII ACRYGT 1 cut(s) 1133
AgsI TTSAA 4 cut(s) 29, 58, 92, 1348
AjnI CCWGG 4 cut(s) 171, 851, 1293, 1454
Alw21I GWGCWC 2 cut(s) 672, 1110
Alw26I GTCTC 6 cut(s) 485, 583, 625, 1281, 1393, 1431
AlwI GGATC 3 cut(s) 170, 183, 1546
AoxI GGCC 5 cut(s) 169, 812, 855, 1176, 1408
ApaI GGGCCC 2 cut(s) 816, 859
AspLEI GCGC 2 cut(s) 1066, 1589
AspS9I GGNCC 9 cut(s) 200, 267, 812, 813, 832, 855, 856, 984, 1123
AsuHPI GGTGA 4 cut(s) 176, 344, 398, 881
AvaII GGWCC 5 cut(s) 200, 267, 832, 984, 1123
AxyI CCTNAGG 1 cut(s) 80
BaeGI GKGCMC 2 cut(s) 816, 859
BalI TGGCCA 1 cut(s) 1410
BamHI GGATCC 1 cut(s) 175
BanII GRGCYC 4 cut(s) 672, 816, 859, 1110
BauI CACGAG 2 cut(s) 195, 327
Bbv12I GWGCWC 2 cut(s) 672, 1110
BccI CCATC 4 cut(s) 155, 211, 268, 1317
BciT130I CCWGG 4 cut(s) 173, 853, 1295, 1456
BciVI GTATCC 1 cut(s) 1540
BclI TGATCA 2 cut(s) 504, 1095
BcoDI GTCTC 6 cut(s) 485, 583, 625, 1281, 1393, 1431
BfaI CTAG 2 cut(s) 944, 1434
BfmI CTRYAG 2 cut(s) 410, 1236
BfuAI ACCTGC 1 cut(s) 417
BfuI GTATCC 1 cut(s) 1540
BglII AGATCT 1 cut(s) 1267
BlpI GCTNAGC 1 cut(s) 144
Bme1390I CCNGG 4 cut(s) 173, 853, 1295, 1456
Bme18I GGWCC 5 cut(s) 200, 267, 832, 984, 1123
BmgT120I GGNCC 9 cut(s) 200, 267, 812, 813, 832, 855, 856, 984, 1123
BmiI GGNNCC 6 cut(s) 177, 814, 815, 833, 857, 1124
BmrFI CCNGG 4 cut(s) 173, 853, 1295, 1456
BmsI GCATC 5 cut(s) 115, 694, 730, 939, 1477
BpmI CTGGAG 3 cut(s) 206, 591, 1440
Bpu10I CCTNAGC 3 cut(s) 225, 666, 1180
Bpu1102I GCTNAGC 1 cut(s) 144
BpuEI CTTGAG 2 cut(s) 803, 938
BsaBI GATNNNNATC 2 cut(s) 348, 1094
BsaI GGTCTC 2 cut(s) 485, 1431
BsaJI CCNNGG 3 cut(s) 465, 852, 1455
Bsc4I CCNNNNNNNGG 4 cut(s) 841, 865, 1060, 1167
Bse1I ACTGG 4 cut(s) 189, 1189, 1468, 1519
Bse21I CCTNAGG 1 cut(s) 80
Bse3DI GCAATG 2 cut(s) 339, 1231
Bse8I GATNNNNATC 2 cut(s) 348, 1094
BseBI CCWGG 4 cut(s) 173, 853, 1295, 1456
BseDI CCNNGG 3 cut(s) 465, 852, 1455
BseGI GGATG 2 cut(s) 316, 373
BseJI GATNNNNATC 2 cut(s) 348, 1094
BseLI CCNNNNNNNGG 4 cut(s) 841, 865, 1060, 1167
BseMI GCAATG 2 cut(s) 339, 1231
BseMII CTCAG 7 cut(s) 135, 216, 657, 971, 1036, 1188, 1556
BseNI ACTGG 4 cut(s) 189, 1189, 1468, 1519
BseRI GAGGAG 1 cut(s) 643
BseSI GKGCMC 2 cut(s) 816, 859
BseYI CCCAGC 2 cut(s) 1119, 1307
Bsh1236I CGCG 1 cut(s) 1587
BshFI GGCC 5 cut(s) 171, 814, 857, 1178, 1410
BsiHKAI GWGCWC 2 cut(s) 672, 1110
BslFI GGGAC 2 cut(s) 845, 1136
BslI CCNNNNNNNGG 4 cut(s) 841, 865, 1060, 1167
BsmAI GTCTC 6 cut(s) 485, 583, 625, 1281, 1393, 1431
BsmBI CGTCTC 1 cut(s) 625
BsmFI GGGAC 2 cut(s) 845, 1136
BsnI GGCC 5 cut(s) 171, 814, 857, 1178, 1410
Bso31I GGTCTC 2 cut(s) 485, 1431
Bsp120I GGGCCC 2 cut(s) 812, 855
Bsp1286I GDGCHC 4 cut(s) 672, 816, 859, 1110
Bsp143I GATC 6 cut(s) 175, 504, 963, 1095, 1267, 1538
Bsp1720I GCTNAGC 1 cut(s) 144
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 6 cut(s) 238, 775, 1257, 1392, 1425, 1441
BspANI GGCC 5 cut(s) 171, 814, 857, 1178, 1410
BspCNI CTCAG 7 cut(s) 136, 217, 658, 972, 1035, 1189, 1555
BspFNI CGCG 1 cut(s) 1587
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 6 cut(s) 177, 814, 815, 833, 857, 1124
BspMAI CTGCAG 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 3 cut(s) 170, 183, 1546
BspQI GCTCTTC 1 cut(s) 1098
BspTNI GGTCTC 2 cut(s) 485, 1431
BsrDI GCAATG 2 cut(s) 339, 1231
BsrI ACTGG 4 cut(s) 189, 1189, 1468, 1519
BssECI CCNNGG 3 cut(s) 465, 852, 1455
BssMI GATC 6 cut(s) 175, 504, 963, 1095, 1267, 1538
BssSI CACGAG 2 cut(s) 195, 327
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 2 cut(s) 195, 327
Bst2UI CCWGG 4 cut(s) 173, 853, 1295, 1456
Bst4CI ACNGT 1 cut(s) 1166
Bst6I CTCTTC 3 cut(s) 544, 966, 1098
BstC8I GCNNGC 4 cut(s) 567, 1117, 1176, 1501
BstDEI CTNAG 9 cut(s) 80, 144, 225, 666, 980, 1022, 1180, 1197, 1542
BstDSI CCRYGG 1 cut(s) 465
BstENI CCTNNNNNAGG 2 cut(s) 863, 1058
BstF5I GGATG 2 cut(s) 316, 373
BstFNI CGCG 1 cut(s) 1587
BstHHI GCGC 2 cut(s) 1066, 1589
BstKTI GATC 6 cut(s) 178, 507, 966, 1098, 1270, 1541
BstMAI GTCTC 6 cut(s) 485, 583, 625, 1281, 1393, 1431
BstMBI GATC 6 cut(s) 175, 504, 963, 1095, 1267, 1538
BstMWI GCNNNNNNNGC 7 cut(s) 74, 712, 854, 1083, 1241, 1279, 1496
BstNI CCWGG 4 cut(s) 173, 853, 1295, 1456
BstSCI CCNGG 4 cut(s) 171, 851, 1293, 1454
BstSFI CTRYAG 2 cut(s) 410, 1236
BstSLI GKGCMC 2 cut(s) 816, 859
BstUI CGCG 1 cut(s) 1587
BstX2I RGATCY 3 cut(s) 175, 1267, 1538
BstXI CCANNNNNNTGG 2 cut(s) 706, 1418
BstYI RGATCY 3 cut(s) 175, 1267, 1538
Bsu36I CCTNAGG 1 cut(s) 80
BsuI GTATCC 1 cut(s) 1540
BsuRI GGCC 5 cut(s) 171, 814, 857, 1178, 1410
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 2 cut(s) 316, 373
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 2 cut(s) 507, 687
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 4 cut(s) 567, 1117, 1176, 1501
CciI TCATGA 1 cut(s) 595
CfoI GCGC 2 cut(s) 1066, 1589
Cfr13I GGNCC 9 cut(s) 200, 267, 812, 813, 832, 855, 856, 984, 1123
Csp6I GTAC 1 cut(s) 1377
CviQI GTAC 1 cut(s) 1377
DdeI CTNAG 9 cut(s) 80, 144, 225, 666, 980, 1022, 1180, 1197, 1542
DpnI GATC 6 cut(s) 177, 506, 965, 1097, 1269, 1540
DpnII GATC 6 cut(s) 175, 504, 963, 1095, 1267, 1538
DraIII CACNNNGTG 1 cut(s) 575
EaeI YGGCCR 1 cut(s) 1408
Eam1104I CTCTTC 3 cut(s) 544, 966, 1098
EarI CTCTTC 3 cut(s) 544, 966, 1098
Ecl136II GAGCTC 2 cut(s) 670, 1108
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 2 cut(s) 171, 1178
Eco24I GRGCYC 4 cut(s) 672, 816, 859, 1110
Eco31I GGTCTC 2 cut(s) 485, 1431
Eco32I GATATC 3 cut(s) 346, 593, 1481
Eco47I GGWCC 5 cut(s) 200, 267, 832, 984, 1123
Eco53kI GAGCTC 2 cut(s) 670, 1108
Eco57I CTGAAG 2 cut(s) 531, 944
Eco81I CCTNAGG 1 cut(s) 80
EcoICRI GAGCTC 2 cut(s) 670, 1108
EcoNI CCTNNNNNAGG 2 cut(s) 863, 1058
EcoO109I RGGNCCY 5 cut(s) 812, 813, 855, 856, 984
EcoRII CCWGG 4 cut(s) 171, 851, 1293, 1454
EcoRV GATATC 3 cut(s) 346, 593, 1481
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 4 cut(s) 672, 816, 859, 1110
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 625
FalI AAGNNNNNCTT 4 cut(s) 857, 889, 1095, 1127
FaqI GGGAC 2 cut(s) 845, 1136
FauI CCCGC 2 cut(s) 245, 1418
FauNDI CATATG 3 cut(s) 429, 651, 1495
FbaI TGATCA 2 cut(s) 504, 1095
FokI GGATG 2 cut(s) 323, 380
FriOI GRGCYC 4 cut(s) 672, 816, 859, 1110
FspBI CTAG 2 cut(s) 944, 1434
GlaI GCGC 2 cut(s) 1065, 1588
GsaI CCCAGC 2 cut(s) 1123, 1311
GsuI CTGGAG 3 cut(s) 206, 591, 1440
HaeIII GGCC 5 cut(s) 171, 814, 857, 1178, 1410
HhaI GCGC 2 cut(s) 1066, 1589
Hin6I GCGC 2 cut(s) 1064, 1587
HinP1I GCGC 2 cut(s) 1064, 1587
HincII GTYRAC 1 cut(s) 1194
HindII GTYRAC 1 cut(s) 1194
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 5 cut(s) 45, 403, 928, 1018, 1069
HphI GGTGA 4 cut(s) 176, 344, 398, 881
Hpy166II GTNNAC 1 cut(s) 1194
Hpy188I TCNGA 7 cut(s) 256, 532, 690, 924, 981, 1060, 1470
Hpy8I GTNNAC 1 cut(s) 1194
HpyAV CCTTC 2 cut(s) 161, 506
HpyCH4III ACNGT 1 cut(s) 1166
HpyCH4IV ACGT 2 cut(s) 1135, 1155
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 712, 854, 1083, 1241, 1279, 1496
HpyF3I CTNAG 9 cut(s) 80, 144, 225, 666, 980, 1022, 1180, 1197, 1542
HpySE526I ACGT 2 cut(s) 1135, 1155
HspAI GCGC 2 cut(s) 1064, 1587
Ksp22I TGATCA 2 cut(s) 504, 1095
Kzo9I GATC 6 cut(s) 175, 504, 963, 1095, 1267, 1538
LguI GCTCTTC 1 cut(s) 1098
LmnI GCTCC 1 cut(s) 1113
LweI GCATC 5 cut(s) 115, 694, 730, 939, 1477
MaeI CTAG 2 cut(s) 944, 1434
MaeII ACGT 2 cut(s) 1135, 1155
MaeIII GTNAC 3 cut(s) 386, 404, 869
MalI GATC 6 cut(s) 177, 506, 965, 1097, 1269, 1540
MboI GATC 6 cut(s) 175, 504, 963, 1095, 1267, 1538
MboII GAAGA 6 cut(s) 170, 561, 762, 937, 983, 1115
MflI RGATCY 3 cut(s) 175, 1267, 1538
MhlI GDGCHC 4 cut(s) 672, 816, 859, 1110
MlsI TGGCCA 1 cut(s) 1410
MluCI AATT 2 cut(s) 137, 898
MluNI TGGCCA 1 cut(s) 1410
MlyI GAGTC 4 cut(s) 54, 412, 1012, 1063
MmeI TCCRAC 1 cut(s) 603
Mox20I TGGCCA 1 cut(s) 1410
MscI TGGCCA 1 cut(s) 1410
MseI TTAA 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 1410
MspA1I CMGCKG 2 cut(s) 1392, 1529
MspR9I CCNGG 4 cut(s) 173, 853, 1295, 1456
MvaI CCWGG 4 cut(s) 173, 853, 1295, 1456
MvnI CGCG 1 cut(s) 1587
MwoI GCNNNNNNNGC 7 cut(s) 74, 712, 854, 1083, 1241, 1279, 1496
NcoI CCATGG 1 cut(s) 465
NdeI CATATG 3 cut(s) 429, 651, 1495
NdeII GATC 6 cut(s) 175, 504, 963, 1095, 1267, 1538
NlaIV GGNNCC 6 cut(s) 177, 814, 815, 833, 857, 1124
NmuCI GTSAC 3 cut(s) 386, 404, 869
PagI TCATGA 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 417
PceI AGGCCT 2 cut(s) 171, 1178
PciSI GCTCTTC 1 cut(s) 1098
PfeI GAWTC 1 cut(s) 928
PflMI CCANNNNNTGG 1 cut(s) 841
PleI GAGTC 4 cut(s) 53, 411, 1012, 1063
PpsI GAGTC 4 cut(s) 53, 411, 1012, 1063
PpuMI RGGWCCY 1 cut(s) 984
PsiI TTATAA 2 cut(s) 105, 456
Psp124BI GAGCTC 2 cut(s) 672, 1110
Psp5II RGGWCCY 1 cut(s) 984
Psp6I CCWGG 4 cut(s) 171, 851, 1293, 1454
PspFI CCCAGC 2 cut(s) 1119, 1307
PspGI CCWGG 4 cut(s) 171, 851, 1293, 1454
PspN4I GGNNCC 6 cut(s) 177, 814, 815, 833, 857, 1124
PspOMI GGGCCC 2 cut(s) 812, 855
PspPI GGNCC 9 cut(s) 200, 267, 812, 813, 832, 855, 856, 984, 1123
PspPPI RGGWCCY 1 cut(s) 984
PstI CTGCAG 1 cut(s) 414
PsuI RGATCY 3 cut(s) 175, 1267, 1538
PvuII CAGCTG 1 cut(s) 1529
RsaI GTAC 1 cut(s) 1378
RsaNI GTAC 1 cut(s) 1377
SacI GAGCTC 2 cut(s) 672, 1110
SapI GCTCTTC 1 cut(s) 1098
SaqAI TTAA 1 cut(s) 660
Sau3AI GATC 6 cut(s) 175, 504, 963, 1095, 1267, 1538
Sau96I GGNCC 9 cut(s) 200, 267, 812, 813, 832, 855, 856, 984, 1123
SbfI CCTGCAGG 1 cut(s) 414
SchI GAGTC 4 cut(s) 54, 412, 1012, 1063
ScrFI CCNGG 4 cut(s) 173, 853, 1295, 1456
SdaI CCTGCAGG 1 cut(s) 414
SduI GDGCHC 4 cut(s) 672, 816, 859, 1110
SfaNI GCATC 5 cut(s) 115, 694, 730, 939, 1477
SfcI CTRYAG 2 cut(s) 410, 1236
SinI GGWCC 5 cut(s) 200, 267, 832, 984, 1123
SmlI CTYRAG 2 cut(s) 782, 953
SmoI CTYRAG 2 cut(s) 782, 953
Sse8387I CCTGCAGG 1 cut(s) 414
Sse9I AATT 2 cut(s) 137, 898
SseBI AGGCCT 2 cut(s) 171, 1178
SsiI CCGC 6 cut(s) 238, 775, 1257, 1392, 1425, 1441
SspI AATATT 1 cut(s) 35
SspMI CTAG 2 cut(s) 944, 1434
SstI GAGCTC 2 cut(s) 672, 1110
StuI AGGCCT 2 cut(s) 171, 1178
StyD4I CCNGG 4 cut(s) 171, 851, 1293, 1454
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 1166
TaiI ACGT 2 cut(s) 1138, 1158
TaqI TCGA 2 cut(s) 440, 1477
TasI AATT 2 cut(s) 137, 898
TfiI GAWTC 1 cut(s) 928
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 2 cut(s) 514, 687
TseFI GTSAC 3 cut(s) 386, 404, 869
Tsp45I GTSAC 3 cut(s) 386, 404, 869
TspDTI ATGAA 3 cut(s) 1116, 1242, 1542
TspRI CASTG 2 cut(s) 514, 687
Van91I CCANNNNNTGG 1 cut(s) 841
VpaK11BI GGWCC 5 cut(s) 200, 267, 832, 984, 1123
XagI CCTNNNNNAGG 2 cut(s) 863, 1058
XbaI TCTAGA 2 cut(s) 943, 1433
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XspI CTAG 2 cut(s) 944, 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.