Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000938

Physical Location & Seq

Genomic Coordinates Forward (+)

54781800 .. 54786132

Gene Structure 4333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTTCGACTTCGAAATTCTGGGGCCGCCAGAGTGATCAAAGTGGCAGCGATAGCGATTCAGAAGATGAGCATGTAATCACAGATGAGGAGACGACTAGCATTAAGAAAATCAAAAACAAATACGAAATTGAAAGTGATGATGAGGAAAGCTCTGATGACGAAAAGCGTGTGGTTAAGTCAGGGAAAGCTAAGCGATTCGAGGAGATGTGTGCTACTGTTGACAAGATAAACAAGGCAAAGAACATAAACGATTGGGTGAGCTTGCAGGACTCGTTTGACAAGATGAATAAACAGCTTGAGAAGGTGATGCGCGTAGCCCGGTCTGGAAAAGTACCAACTCTGTACATCAGAGCGCTTGTTTTGTTGGAGGAGTATGTGGCCGAGGCTCTAGCAGATAAGGATGCTAAGAAGAAGATGAGTAGCACCAATGCCAAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031369 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI eIF-3c_N

Protein Analysis

147

Amino Acids

16.68

Weight (kDa)

5.39

Isoelectric Point (pI)

60.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-3c_N	PF05470	45 - 146	3.6e-30	Eukaryotic translation initiation factor 3 subunit 8 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56150 AT3G56150
fragaria_vesca	FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_6g21351 FvH4_6g21351 FvH4_6g21360 FvH4_6g21360 FvH4_6g21360
malus_domestica	MD05G1153900.v1.1 MD08G1196100.v1.1 MD12G1050600.v1.1 MD15G1383900.v1.1
prunus_persica	Prupe.1G530000_v2.0.a1 Prupe.7G086100_v2.0.a1 Prupe.7G086100_v2.0.a1
pyrus_communis	pycom08g16830 pycom12g04510 pycom15g34350
rosa_chinensis	RchiOBHm_Chr3g0477961 RchiOBHm_Chr3g0477971 RchiOBHm_Chr7g0236891
rosa_laevigata	RLG00000001050 RLG00000023675 RLG00000023676
rosa_multiflora	Rmu_co8284977.1_g000001 Rmu_co8517169.1_g000001 Rmu_sc0005991.1_g000006 Rmu_sc0010895.1_g000001 Rmu_sc0013727.1_g000003 Rmu_sc0028822.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032460 Rroxscaffold_1G00037610 Rroxscaffold_3G00224710 Rroxscaffold_6G00403560 Rroxscaffold_6G00403570
rosa_rugosa	Rorug03G0164400 Rorug03G0164500 Rorug03G0164600 Rorug03G0164700 Rorug03G0164800 Rorug03G0164900 Rorug07G0300800
rosa_samantha	Rh2AG276900 Rh3AG215100 Rh3AG215200 Rh3BG248700 Rh3BG248800 Rh3CG242600 Rh3CG242700 Rh3DG242000 Rh3DG242200 Rh3DG242300 Rh7AG455600 Rh7BG427000 Rh7CG474300 Rh7DG443500
rosa_wichuraiana	Rw0G010140 Rw0G010150 Rw3G019380 Rw3G019390 Rw7G037820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	315
AciI	CCGC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	2 cut(s)	336, 347
AfeI	AGCGCT	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	4 cut(s)	153, 191, 264, 298
AluI	AGCT	4 cut(s)	153, 191, 264, 298
Alw26I	GTCTC	1 cut(s)	86
Aor51HI	AGCGCT	1 cut(s)	357
AoxI	GGCC	2 cut(s)	25, 381
ApeKI	GCWGC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	315, 358
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	271, 319
AsuII	TTCGAA	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	60
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	99, 392
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	2 cut(s)	28, 49
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	2 cut(s)	29, 50
Bme1390I	CCNGG	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	300, 394
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu1102I	GCTNAGC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	409
BseRI	GAGGAG	3 cut(s)	104, 218, 386
BseXI	GCAGC	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	27, 383
BsiSI	CCGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	27, 383
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	1 cut(s)	37
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	27, 383
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	192, 408
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	315
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	2 cut(s)	315, 358
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	320
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	27, 383
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	2 cut(s)	315, 358
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	335, 346
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	9 cut(s)	5, 27, 153, 191, 264, 298, 320, 383, 389
CviKI_1	RGCY	9 cut(s)	5, 27, 153, 191, 264, 298, 320, 383, 389
CviQI	GTAC	2 cut(s)	335, 346
DdeI	CTNAG	2 cut(s)	192, 408
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	1 cut(s)	77
FaiI	YATR	4 cut(s)	75, 248, 378, 442
FatI	CATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	28, 49
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	28, 49
FspBI	CTAG	2 cut(s)	99, 392
GlaI	GCGC	2 cut(s)	314, 357
GluI	GCNGC	2 cut(s)	28, 49
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	27, 383
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	2 cut(s)	315, 358
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	2 cut(s)	313, 356
HinP1I	GCGC	2 cut(s)	313, 356
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	59, 198, 272
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	2 cut(s)	271, 319
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	64, 157, 353
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	192, 408
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	2 cut(s)	313, 356
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	6 cut(s)	7, 44, 168, 254, 312, 335
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	2 cut(s)	300, 394
MaeI	CTAG	2 cut(s)	99, 392
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	3 cut(s)	77, 424, 427
MluCI	AATT	2 cut(s)	17, 129
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	5 cut(s)	82, 139, 196, 364, 379
MseI	TTAA	2 cut(s)	105, 177
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	54
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	26
NmeAIII	GCCGAG	1 cut(s)	409
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	59, 198
PkrI	GCNGC	2 cut(s)	29, 50
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	25
RsaI	GTAC	2 cut(s)	336, 347
RsaNI	GTAC	2 cut(s)	335, 346
SaqAI	TTAA	2 cut(s)	105, 177
SatI	GCNGC	2 cut(s)	28, 49
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	5 cut(s)	155, 193, 266, 300, 309
SfaNI	GCATC	2 cut(s)	300, 394
SfuI	TTCGAA	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	17, 129
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	99, 392
StyD4I	CCNGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	3 cut(s)	8, 14, 201
TasI	AATT	2 cut(s)	17, 129
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	59, 198
Tru1I	TTAA	2 cut(s)	105, 177
Tru9I	TTAA	2 cut(s)	105, 177
TseI	GCWGC	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	302
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	77
XspI	CTAG	2 cut(s)	99, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.