Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000938

Physical Location & Seq

Genomic Coordinates Reverse (-)

23204206 .. 23208029

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG242600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGGCTTCGACTTCGAAATTCTGGGGCCGCCAGAGTGATCAAAGTGACAGCGATAGCGATTCAGAAGATGAGCCTGTAATCACAGATGAGGAGACGACTAGCATTAAGAAAATCAAAAACAAATACGAAATTGAAAGTGATGATGAGGAAAGCTCTGATGACGAAAAGCGTGTGGTTAAGTCAGGGAAAGCTAAGCGATTCGAGGAGATGTGTGCTACTGTTGACAAGATAAACAAGGCAAAGAACATAAACGATTGGGTGAGCTTGCAGGAATCGTTTGACAAGATGAATAAACAGCTTGAGAAGGTGATGCGCGTAGCCCGGTCTGCAAAAGTACCAACTCTGTACATCAGAGCGCTTGTTTTGTTGGAGGAGTATGTAGCCGAGGCTCTAGCAAATAAGGATGCTAAGAAGAAGATGAGTAGCACCAATGCCAAGGCCTTGAACTCGATGAAACAGAAACTCAAGAAGAACAATAAGGAATATGAGGATTTGATTCAGAAGTACAAGGAGAATCCTACAGAAGAAGAGCTTTCGGAAGAGGAAGAATTTGAAACAAATTCTGAAATTGAAGTTCCTAAAGATGTTGGATATGGGGAGGATGAGGAAAAGGAGGATGGTTGGGAGAGAAAATCTAGTAAGAGGAGCAAGCTTGTCCTGGATAAGCAGCAGTTCATGAGTGACCCTCGTCAGGTTACGTGGGATACAGTCAACAAGAAATTCAAAGAGGTTGTGGCTGTTAGGGGAAGGAAGGGAACGAGATGGTTTGAGCTAGTTGAGCAGCTTATTTTCTTGGCAAAGGTTGCTAAGACTCCTGCGCAGAAGCTTGAGATTTTTCTCAGTATTGTTTTTGCTCAATTTGATGCTGGTCTCCATGGGCACATGCCTACGCATGTGTGGAAAAATTGTGTGCAGAATATGCTTGTTATTCTTGATATTCTGGTGCAATATCCCAACATCCGTGTCGTTGACAAGGCGGAGATCGATGATAATGGATCTCAGCATGGATCTGACTATAATGGGACAATCAGGGTCAGTGGAAACTTGGGGGGTTTTGTGGAAAGAATAGATGATGATTTTTTCAAGAGCTTACAGAGTCTAGACCCTCACACCACTGAGTACATTGAAAGACTCAGAGATGAGCCTATGCTTTTCGTTCTTGCTCAGAATGTTCAAGAATATTTGGAGCAAGTTGGAGATTTCAAAGCAGCTGCAAAGGTAGCCCTAAGGCAGGTTGAACTCCTTCACTACAAGCCTCAAGAAGTCTATAATGCCATGAGAAAACTAGCTGAGCAAACAGAAAGTGGTGATAATGGAGAAGTGACTGAAGTCCATGACGCTACATCTGCATTTCTTGCATCTCCTGAGCTCGTACCTCGGGGACCTGCGTTTTTGGAGAGTAGTAGGGCCCTCATGGATATTCTCGTCTCTTTCATATACAAATATGGAGATGATAGGACTAAAGCTCGTGCAATGCTTTGTGATATTTACCACCATGCTCTCCAGGATGATTTCTCTACTGCCCGTAACTTGCTGCTAATGAGTCACCTGCAAGACAGTATTCACCATATGGACATTTCATCCAAAATCGTTTTCAATAGGGCTATGGCACAGCTTGGTCTGTGTGCATTTCGTAATGGACTAATTACTGAAGGACATAGCTGCCTTTCTGAACTATATTCAGGTGGAAAAGTGAAGGAGTTGCTCGGACAAGGTGTGTCCCGAAGTAGATATCATGAGAAAACCCCTGAACAGGGGAGTCTTGAGAGACCCTATCATATGCACATCAACCTTGAGCTCCTAGAGGCAGTGCATTTGATATGTGCCATGCTGCTGGAAGTGCCTAATATGGCAGCAGCCAGCAATACAAAACGCAGGGTGATTAGTAAGACATTCCGGTGGTTGCTTGAGAAGCAAACATTCATAGGACCTCCTGAAACTGTCAGAGACCATGTAATTGCAGCTACAAGGGCCCTCTTCAAAGGTGACTTCCAAAAGGCCTTTGATGTCATCAGTTCTCTTCATGTCTGGAAGCTCCTCAGGAATCGTGAGAATGTTCTGGAGATGCTCAATGCTAATATCAAGGAGGCGGCTCTGAGGACCTACCTTTTCACCTACTATCCGTCCTATAAATCTTTAAGCATTGAGCAAGTGACCAACATGTTTGACCTCTCAGAGGCCGAGACTCATAGCATTGTTAGAAAGATGATCATGAACGAAGAGCTCCATGCTCGTTTGGACCAGCAAACACGTTGCATTGTCTTCCCCGATAATGACCGCACTAGTTTGGTGAATATACTCAAGCTGGTTGACAGGCTGTCAGTCCTCTGCGAAAATAATGAAAAGTTAGCAGAGCTGAGGATAGGTGGTGGTGTATTAAGTCTGCCTTCAGGGAGGCCGAGTTGCTATCAAACTCTTCAATCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031369 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI eIF-3c_N

Protein Analysis

809

Amino Acids

92.48

Weight (kDa)

5.81

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-3c_N	PF05470	45 - 622	2.1e-205	Eukaryotic translation initiation factor 3 subunit 8 N-terminus
PCI	PF01399	685 - 756	5.7e-13	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56150 AT3G56150
fragaria_vesca	FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_6g21351 FvH4_6g21351 FvH4_6g21360 FvH4_6g21360 FvH4_6g21360
malus_domestica	MD05G1153900.v1.1 MD08G1196100.v1.1 MD12G1050600.v1.1 MD15G1383900.v1.1
prunus_persica	Prupe.1G530000_v2.0.a1 Prupe.7G086100_v2.0.a1 Prupe.7G086100_v2.0.a1
pyrus_communis	pycom08g16830 pycom12g04510 pycom15g34350
rosa_chinensis	RchiOBHm_Chr3g0477961 RchiOBHm_Chr3g0477971 RchiOBHm_Chr7g0236891
rosa_laevigata	RLG00000001050 RLG00000023675 RLG00000023676
rosa_multiflora	Rmu_co8284977.1_g000001 Rmu_co8517169.1_g000001 Rmu_sc0005991.1_g000006 Rmu_sc0010895.1_g000001 Rmu_sc0013727.1_g000003 Rmu_sc0028822.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032460 Rroxscaffold_1G00037610 Rroxscaffold_3G00224710 Rroxscaffold_6G00403560 Rroxscaffold_6G00403570
rosa_rugosa	Rorug03G0164400 Rorug03G0164500 Rorug03G0164600 Rorug03G0164700 Rorug03G0164800 Rorug03G0164900 Rorug07G0300800
rosa_samantha	Rh2AG276900 Rh3AG215100 Rh3AG215200 Rh3BG248700 Rh3BG248800 Rh3CG242600 Rh3CG242700 Rh3DG242000 Rh3DG242200 Rh3DG242300 Rh7AG455600 Rh7BG427000 Rh7CG474300 Rh7DG443500
rosa_wichuraiana	Rw0G010140 Rw0G010150 Rw3G019380 Rw3G019390 Rw7G037820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1557
Acc16I	TGCGCA	1 cut(s)	819
Acc36I	ACCTGC	3 cut(s)	1222, 1393, 1557
AccII	CGCG	1 cut(s)	315
AciI	CCGC	4 cut(s)	28, 977, 2090, 2278
AclWI	GGATC	2 cut(s)	1003, 1015
AcsI	RAATTY	4 cut(s)	17, 548, 559, 719
AcuI	CTGAAG	3 cut(s)	1347, 1671, 2373
AfaI	GTAC	5 cut(s)	336, 347, 506, 1121, 1374
AfeI	AGCGCT	1 cut(s)	357
AfiI	CCNNNNNNNGG	5 cut(s)	691, 1231, 1753, 1754, 2176
AflIII	ACRYGT	2 cut(s)	2160, 2249
AhdI	GACNNNNNGTC	1 cut(s)	2317
AhlI	ACTAGT	1 cut(s)	2282
AjnI	CCWGG	2 cut(s)	657, 1503
AjuI	GAANNNNNNNTTGG	2 cut(s)	1577, 1609
Alw21I	GWGCWC	3 cut(s)	1371, 1800, 2226
Alw26I	GTCTC	6 cut(s)	86, 875, 1432, 1762, 1941, 2177
AlwI	GGATC	2 cut(s)	1003, 1015
Ama87I	CYCGRG	1 cut(s)	1377
Aor51HI	AGCGCT	1 cut(s)	357
AoxI	GGCC	7 cut(s)	25, 438, 1407, 1971, 1998, 2178, 2396
ApaI	GGGCCC	2 cut(s)	1411, 1975
ApoI	RAATTY	4 cut(s)	17, 548, 559, 719
Asp700I	GAANNNNTTC	1 cut(s)	1242
AspLEI	GCGC	3 cut(s)	315, 358, 820
AspS9I	GGNCC	9 cut(s)	25, 1382, 1407, 1408, 1928, 1971, 1972, 2100, 2239
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	9 cut(s)	271, 319, 1319, 1538, 1556, 1891, 1997, 2104, 2302
AsuII	TTCGAA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	1377
AvaII	GGWCC	4 cut(s)	1382, 1928, 2100, 2239
AxyI	CCTNAGG	2 cut(s)	1226, 2039
BaeGI	GKGCMC	3 cut(s)	882, 1411, 1975
BanII	GRGCYC	5 cut(s)	1371, 1411, 1800, 1975, 2226
BauI	CACGAG	1 cut(s)	1467
BbsI	GAAGAC	1 cut(s)	2254
Bbv12I	GWGCWC	3 cut(s)	1371, 1800, 2226
BbvCI	CCTCAGC	1 cut(s)	2357
BccI	CCATC	2 cut(s)	611, 756
BciT130I	CCWGG	2 cut(s)	659, 1505
BciVI	GTATCC	1 cut(s)	697
BclI	TGATCA	2 cut(s)	37, 2208
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	6 cut(s)	86, 875, 1432, 1762, 1941, 2177
BcuI	ACTAGT	1 cut(s)	2282
BfaI	CTAG	8 cut(s)	99, 392, 636, 773, 1100, 1286, 1802, 2283
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	359
BfuAI	ACCTGC	3 cut(s)	1222, 1393, 1557
BfuI	GTATCC	1 cut(s)	697
BlpI	GCTNAGC	2 cut(s)	192, 1290
Bme1390I	CCNGG	3 cut(s)	322, 659, 1505
Bme18I	GGWCC	4 cut(s)	1382, 1928, 2100, 2239
BmeRI	GACNNNNNGTC	1 cut(s)	2317
BmeT110I	CYCGRG	1 cut(s)	1377
BmgT120I	GGNCC	9 cut(s)	25, 1382, 1407, 1408, 1928, 1971, 1972, 2100, 2239
BmiI	GGNNCC	4 cut(s)	26, 1383, 1409, 1973
BmrFI	CCNGG	3 cut(s)	322, 659, 1505
BmsI	GCATC	5 cut(s)	300, 394, 853, 1367, 2055
BoxI	GACNNNNGTC	2 cut(s)	687, 1328
BpiI	GAAGAC	1 cut(s)	2254
BplI	GAGNNNNNCTC	4 cut(s)	137, 169, 670, 702
BpmI	CTGGAG	2 cut(s)	1487, 2081
Bpu10I	CCTNAGC	2 cut(s)	1365, 2357
Bpu1102I	GCTNAGC	2 cut(s)	192, 1290
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	8 cut(s)	320, 449, 848, 1242, 1784, 1814, 1928, 2285
BpuMI	CCSGG	1 cut(s)	322
Bsa29I	ATCGAT	1 cut(s)	984
BsaAI	YACGTR	1 cut(s)	699
BsaI	GGTCTC	3 cut(s)	875, 1762, 1941
BsaJI	CCNNGG	4 cut(s)	384, 435, 874, 1376
BsaWI	WCCGGW	1 cut(s)	1896
BsaXI	ACNNNNNCTCC	2 cut(s)	2386, 2416
Bsc4I	CCNNNNNNNGG	5 cut(s)	691, 1231, 1753, 1754, 2176
Bse21I	CCTNAGG	2 cut(s)	1226, 2039
Bse3DI	GCAATG	1 cut(s)	1479
BseBI	CCWGG	2 cut(s)	659, 1505
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	4 cut(s)	384, 435, 874, 1376
BseGI	GGATG	6 cut(s)	409, 607, 622, 957, 1513, 1580
BseLI	CCNNNNNNNGG	5 cut(s)	691, 1231, 1753, 1754, 2176
BseMI	GCAATG	1 cut(s)	1479
BseRI	GAGGAG	5 cut(s)	104, 218, 386, 658, 2027
BseSI	GKGCMC	3 cut(s)	882, 1411, 1975
BsgI	GTGCAG	1 cut(s)	932
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	7 cut(s)	27, 440, 1409, 1973, 2000, 2180, 2398
BshVI	ATCGAT	1 cut(s)	984
BsiHKAI	GWGCWC	3 cut(s)	1371, 1800, 2226
BsiHKCI	CYCGRG	1 cut(s)	1377
BsiSI	CCGG	2 cut(s)	322, 1897
BslFI	GGGAC	3 cut(s)	1036, 1395, 1705
BslI	CCNNNNNNNGG	5 cut(s)	691, 1231, 1753, 1754, 2176
BsmAI	GTCTC	6 cut(s)	86, 875, 1432, 1762, 1941, 2177
BsmBI	CGTCTC	2 cut(s)	86, 1432
BsmFI	GGGAC	3 cut(s)	1036, 1395, 1705
BsnI	GGCC	7 cut(s)	27, 440, 1409, 1973, 2000, 2180, 2398
Bso31I	GGTCTC	3 cut(s)	875, 1762, 1941
BsoBI	CYCGRG	1 cut(s)	1377
Bsp119I	TTCGAA	1 cut(s)	14
Bsp120I	GGGCCC	2 cut(s)	1407, 1971
Bsp1286I	GDGCHC	6 cut(s)	882, 1371, 1411, 1800, 1975, 2226
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	37, 981, 995, 1007, 2208
Bsp1720I	GCTNAGC	2 cut(s)	192, 1290
Bsp19I	CCATGG	1 cut(s)	874
BspACI	CCGC	4 cut(s)	28, 977, 2090, 2278
BspANI	GGCC	7 cut(s)	27, 440, 1409, 1973, 2000, 2180, 2398
BspDI	ATCGAT	1 cut(s)	984
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	3 cut(s)	675, 1735, 2211
BspLI	GGNNCC	4 cut(s)	26, 1383, 1409, 1973
BspMI	ACCTGC	3 cut(s)	1222, 1393, 1557
BspPI	GGATC	2 cut(s)	1003, 1015
BspQI	GCTCTTC	2 cut(s)	522, 2214
BspT104I	TTCGAA	1 cut(s)	14
BspTNI	GGTCTC	3 cut(s)	875, 1762, 1941
BsrDI	GCAATG	1 cut(s)	1479
BsrGI	TGTACA	1 cut(s)	345
BssECI	CCNNGG	4 cut(s)	384, 435, 874, 1376
BssMI	GATC	5 cut(s)	37, 981, 995, 1007, 2208
BssSI	CACGAG	1 cut(s)	1467
BssT1I	CCWWGG	2 cut(s)	435, 874
Bst2BI	CACGAG	1 cut(s)	1467
Bst2UI	CCWGG	2 cut(s)	659, 1505
Bst4CI	ACNGT	4 cut(s)	220, 709, 1559, 1942
Bst6I	CTCTTC	6 cut(s)	522, 534, 1982, 2025, 2214, 2421
BstAPI	GCANNNNNTGC	3 cut(s)	803, 919, 1355
BstAUI	TGTACA	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	699
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	266, 650, 1861
BstDSI	CCRYGG	1 cut(s)	874
BstENI	CCTNNNNNAGG	2 cut(s)	1229, 2174
BstF5I	GGATG	6 cut(s)	409, 607, 622, 957, 1513, 1580
BstFNI	CGCG	1 cut(s)	315
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	3 cut(s)	315, 358, 820
BstKTI	GATC	5 cut(s)	40, 984, 998, 1010, 2211
BstMAI	GTCTC	6 cut(s)	86, 875, 1432, 1762, 1941, 2177
BstMBI	GATC	5 cut(s)	37, 981, 995, 1007, 2208
BstNI	CCWGG	2 cut(s)	659, 1505
BstNSI	RCATGY	3 cut(s)	886, 896, 2164
BstPAI	GACNNNNGTC	2 cut(s)	687, 1328
BstSCI	CCNGG	3 cut(s)	320, 657, 1503
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	3 cut(s)	882, 1411, 1975
BstUI	CGCG	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	2254
BstX2I	RGATCY	2 cut(s)	995, 1007
BstXI	CCANNNNNNTGG	1 cut(s)	1834
BstYI	RGATCY	2 cut(s)	995, 1007
Bsu15I	ATCGAT	1 cut(s)	984
Bsu36I	CCTNAGG	2 cut(s)	1226, 2039
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	7 cut(s)	27, 440, 1409, 1973, 2000, 2180, 2398
BsuTUI	ATCGAT	1 cut(s)	984
BtgI	CCRYGG	1 cut(s)	874
BtsCI	GGATG	6 cut(s)	409, 607, 622, 957, 1513, 1580
BtsI	GCAGTG	1 cut(s)	1815
BtsIMutI	CAGTG	3 cut(s)	1042, 1113, 1815
BveI	ACCTGC	3 cut(s)	1222, 1393, 1557
Cac8I	GCNNGC	3 cut(s)	266, 650, 1861
CciI	TCATGA	3 cut(s)	675, 1735, 2211
CfoI	GCGC	3 cut(s)	315, 358, 820
Cfr13I	GGNCC	9 cut(s)	25, 1382, 1407, 1408, 1928, 1971, 1972, 2100, 2239
ClaI	ATCGAT	1 cut(s)	984
CseI	GACGC	1 cut(s)	1346
Csp6I	GTAC	5 cut(s)	335, 346, 505, 1120, 1373
CviQI	GTAC	5 cut(s)	335, 346, 505, 1120, 1373
DpnI	GATC	5 cut(s)	39, 983, 997, 1009, 2210
DpnII	GATC	5 cut(s)	37, 981, 995, 1007, 2208
DriI	GACNNNNNGTC	1 cut(s)	2317
Eam1104I	CTCTTC	6 cut(s)	522, 534, 1982, 2025, 2214, 2421
Eam1105I	GACNNNNNGTC	1 cut(s)	2317
EarI	CTCTTC	6 cut(s)	522, 534, 1982, 2025, 2214, 2421
EciI	GGCGGA	1 cut(s)	992
Ecl136II	GAGCTC	3 cut(s)	1369, 1798, 2224
Eco130I	CCWWGG	2 cut(s)	435, 874
Eco147I	AGGCCT	2 cut(s)	440, 2000
Eco24I	GRGCYC	5 cut(s)	1371, 1411, 1800, 1975, 2226
Eco31I	GGTCTC	3 cut(s)	875, 1762, 1941
Eco32I	GATATC	1 cut(s)	1733
Eco47I	GGWCC	4 cut(s)	1382, 1928, 2100, 2239
Eco47III	AGCGCT	1 cut(s)	357
Eco53kI	GAGCTC	3 cut(s)	1369, 1798, 2224
Eco57I	CTGAAG	3 cut(s)	1347, 1671, 2373
Eco81I	CCTNAGG	2 cut(s)	1226, 2039
Eco88I	CYCGRG	1 cut(s)	1377
EcoICRI	GAGCTC	3 cut(s)	1369, 1798, 2224
EcoNI	CCTNNNNNAGG	2 cut(s)	1229, 2174
EcoO109I	RGGNCCY	7 cut(s)	1382, 1407, 1408, 1928, 1971, 1972, 2100
EcoRII	CCWGG	2 cut(s)	657, 1503
EcoRV	GATATC	1 cut(s)	1733
EcoT14I	CCWWGG	2 cut(s)	435, 874
EcoT38I	GRGCYC	5 cut(s)	1371, 1411, 1800, 1975, 2226
ErhI	CCWWGG	2 cut(s)	435, 874
Esp3I	CGTCTC	2 cut(s)	86, 1432
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 2371, 2403
FaqI	GGGAC	3 cut(s)	1036, 1395, 1705
FauNDI	CATATG	2 cut(s)	1569, 1779
FbaI	TGATCA	2 cut(s)	37, 2208
FokI	GGATG	6 cut(s)	416, 614, 629, 944, 1520, 1567
FriOI	GRGCYC	5 cut(s)	1371, 1411, 1800, 1975, 2226
FspBI	CTAG	8 cut(s)	99, 392, 636, 773, 1100, 1286, 1802, 2283
FspI	TGCGCA	1 cut(s)	819
GlaI	GCGC	3 cut(s)	314, 357, 819
GsuI	CTGGAG	2 cut(s)	1487, 2081
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	7 cut(s)	27, 440, 1409, 1973, 2000, 2180, 2398
HapII	CCGG	2 cut(s)	322, 1897
HgaI	GACGC	1 cut(s)	1346
HhaI	GCGC	3 cut(s)	315, 358, 820
Hin6I	GCGC	3 cut(s)	313, 356, 818
HinP1I	GCGC	3 cut(s)	313, 356, 818
HincII	GTYRAC	4 cut(s)	223, 712, 970, 2311
HindII	GTYRAC	4 cut(s)	223, 712, 970, 2311
HindIII	AAGCTT	2 cut(s)	650, 824
HpaII	CCGG	2 cut(s)	322, 1897
HphI	GGTGA	9 cut(s)	271, 319, 1319, 1538, 1556, 1891, 1997, 2104, 2302
Hpy166II	GTNNAC	4 cut(s)	223, 712, 970, 2311
Hpy8I	GTNNAC	4 cut(s)	223, 712, 970, 2311
HpyAV	CCTTC	7 cut(s)	298, 741, 745, 1253, 1646, 1690, 2397
HpyCH4III	ACNGT	4 cut(s)	220, 709, 1559, 1942
HpyCH4IV	ACGT	2 cut(s)	698, 2251
HpySE526I	ACGT	2 cut(s)	698, 2251
HspAI	GCGC	3 cut(s)	313, 356, 818
Ksp22I	TGATCA	2 cut(s)	37, 2208
Kzo9I	GATC	5 cut(s)	37, 981, 995, 1007, 2208
LguI	GCTCTTC	2 cut(s)	522, 2214
LmnI	GCTCC	5 cut(s)	645, 1186, 1803, 2040, 2229
LweI	GCATC	5 cut(s)	300, 394, 853, 1367, 2055
MaeI	CTAG	8 cut(s)	99, 392, 636, 773, 1100, 1286, 1802, 2283
MaeII	ACGT	2 cut(s)	698, 2251
MaeIII	GTNAC	8 cut(s)	44, 680, 694, 1321, 1526, 1544, 1985, 2152
MalI	GATC	5 cut(s)	39, 983, 997, 1009, 2210
MboI	GATC	5 cut(s)	37, 981, 995, 1007, 2208
MflI	RGATCY	2 cut(s)	995, 1007
MhlI	GDGCHC	6 cut(s)	882, 1371, 1411, 1800, 1975, 2226
MlyI	GAGTC	6 cut(s)	805, 1105, 1125, 1552, 1768, 2179
MmeI	TCCRAC	3 cut(s)	348, 568, 1174
MroXI	GAANNNNTTC	1 cut(s)	1242
MseI	TTAA	4 cut(s)	105, 177, 2138, 2378
MslI	CAYNNNNRTG	1 cut(s)	1897
MspA1I	CMGCKG	1 cut(s)	1211
MspI	CCGG	2 cut(s)	322, 1897
MspR9I	CCNGG	3 cut(s)	322, 659, 1505
MvaI	CCWGG	2 cut(s)	659, 1505
MvnI	CGCG	1 cut(s)	315
NciI	CCSGG	1 cut(s)	322
NcoI	CCATGG	1 cut(s)	874
NdeI	CATATG	2 cut(s)	1569, 1779
NdeII	GATC	5 cut(s)	37, 981, 995, 1007, 2208
NlaIV	GGNNCC	4 cut(s)	26, 1383, 1409, 1973
NmeAIII	GCCGAG	3 cut(s)	409, 2206, 2424
NmuCI	GTSAC	6 cut(s)	44, 680, 1321, 1544, 1985, 2152
NsbI	TGCGCA	1 cut(s)	819
NspI	RCATGY	3 cut(s)	886, 896, 2164
NspV	TTCGAA	1 cut(s)	14
PagI	TCATGA	3 cut(s)	675, 1735, 2211
PaqCI	CACCTGC	1 cut(s)	1557
PceI	AGGCCT	2 cut(s)	440, 2000
PciI	ACATGT	1 cut(s)	2160
PciSI	GCTCTTC	2 cut(s)	522, 2214
PdmI	GAANNNNTTC	1 cut(s)	1242
PfeI	GAWTC	6 cut(s)	59, 198, 272, 496, 514, 2044
PfoI	TCCNGGA	2 cut(s)	657, 1503
PleI	GAGTC	6 cut(s)	805, 1104, 1125, 1551, 1767, 2179
PpsI	GAGTC	6 cut(s)	805, 1104, 1125, 1551, 1767, 2179
Ppu21I	YACGTR	1 cut(s)	699
PpuMI	RGGWCCY	3 cut(s)	1382, 1928, 2100
PscI	ACATGT	1 cut(s)	2160
PshAI	GACNNNNGTC	2 cut(s)	687, 1328
Psp124BI	GAGCTC	3 cut(s)	1371, 1800, 2226
Psp5II	RGGWCCY	3 cut(s)	1382, 1928, 2100
Psp6I	CCWGG	2 cut(s)	657, 1503
PspGI	CCWGG	2 cut(s)	657, 1503
PspN4I	GGNNCC	4 cut(s)	26, 1383, 1409, 1973
PspOMI	GGGCCC	2 cut(s)	1407, 1971
PspPI	GGNCC	9 cut(s)	25, 1382, 1407, 1408, 1928, 1971, 1972, 2100, 2239
PspPPI	RGGWCCY	3 cut(s)	1382, 1928, 2100
PsuI	RGATCY	2 cut(s)	995, 1007
PvuII	CAGCTG	1 cut(s)	1211
RsaI	GTAC	5 cut(s)	336, 347, 506, 1121, 1374
RsaNI	GTAC	5 cut(s)	335, 346, 505, 1120, 1373
RseI	CAYNNNNRTG	1 cut(s)	1897
SacI	GAGCTC	3 cut(s)	1371, 1800, 2226
SapI	GCTCTTC	2 cut(s)	522, 2214
SaqAI	TTAA	4 cut(s)	105, 177, 2138, 2378
Sau3AI	GATC	5 cut(s)	37, 981, 995, 1007, 2208
Sau96I	GGNCC	9 cut(s)	25, 1382, 1407, 1408, 1928, 1971, 1972, 2100, 2239
SchI	GAGTC	6 cut(s)	805, 1105, 1125, 1552, 1768, 2179
ScrFI	CCNGG	3 cut(s)	322, 659, 1505
SduI	GDGCHC	6 cut(s)	882, 1371, 1411, 1800, 1975, 2226
SfaNI	GCATC	5 cut(s)	300, 394, 853, 1367, 2055
SfcI	CTRYAG	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	4 cut(s)	1382, 1928, 2100, 2239
SmiMI	CAYNNNNRTG	1 cut(s)	1897
SmlI	CTYRAG	8 cut(s)	299, 464, 827, 1257, 1763, 1793, 1907, 2300
SmoI	CTYRAG	8 cut(s)	299, 464, 827, 1257, 1763, 1793, 1907, 2300
SpeI	ACTAGT	1 cut(s)	2282
SseBI	AGGCCT	2 cut(s)	440, 2000
SsiI	CCGC	4 cut(s)	28, 977, 2090, 2278
SspI	AATATT	1 cut(s)	1181
SspMI	CTAG	8 cut(s)	99, 392, 636, 773, 1100, 1286, 1802, 2283
SstI	GAGCTC	3 cut(s)	1371, 1800, 2226
StuI	AGGCCT	2 cut(s)	440, 2000
StyD4I	CCNGG	3 cut(s)	320, 657, 1503
StyI	CCWWGG	2 cut(s)	435, 874
TaaI	ACNGT	4 cut(s)	220, 709, 1559, 1942
TaiI	ACGT	2 cut(s)	701, 2254
TaqI	TCGA	5 cut(s)	8, 14, 201, 449, 984
TatI	WGTACW	3 cut(s)	345, 504, 1119
TauI	GCSGC	2 cut(s)	30, 2093
TfiI	GAWTC	6 cut(s)	59, 198, 272, 496, 514, 2044
Tru1I	TTAA	4 cut(s)	105, 177, 2138, 2378
Tru9I	TTAA	4 cut(s)	105, 177, 2138, 2378
TscAI	CASTG	3 cut(s)	1042, 1120, 1815
TseFI	GTSAC	6 cut(s)	44, 680, 1321, 1544, 1985, 2152
Tsp45I	GTSAC	6 cut(s)	44, 680, 1321, 1544, 1985, 2152
TspDTI	ATGAA	9 cut(s)	302, 467, 664, 1423, 1569, 1912, 2012, 2228, 2355
TspGWI	ACGGA	2 cut(s)	950, 2112
TspRI	CASTG	3 cut(s)	1042, 1120, 1815
VpaK11BI	GGWCC	4 cut(s)	1382, 1928, 2100, 2239
XagI	CCTNNNNNAGG	2 cut(s)	1229, 2174
XapI	RAATTY	4 cut(s)	17, 548, 559, 719
XbaI	TCTAGA	1 cut(s)	1099
XceI	RCATGY	3 cut(s)	886, 896, 2164
XmnI	GAANNNNTTC	1 cut(s)	1242
XspI	CTAG	8 cut(s)	99, 392, 636, 773, 1100, 1286, 1802, 2283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.