Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000938

Physical Location & Seq

Genomic Coordinates Reverse (-)

13766877 .. 13767489

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0164700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAGGGGAAGTTTGCAAGGGTGTGCGCCAATAAGTTGAGGAAGATAGGTAATAAAGGGAGCATACCTTCTACTTCCTCGTGCTGCGAGCAATGCTGTCAATGGGCTCTGTGGCCAAACTCCATGCATGAAGAAAACTCGATCCCAAAAGATGTCCCAAAGGGTCACTTGGTAGTTTATGTAGGTGACAACCACAAGAGGTTTGTAATCAAACTCACCTTGCTCAATCACCCACTCTTCAGGGCACTTCTGGACCAAGCTCGAGAAGAATACGATTTCAATGCTCACTCAAAACTCTACATACCCTGCGATGAGAACCTCTTCCTCGAAGTTGTTCGATGCGCTAAGCTCTCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031369 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI eIF-3c_N

Protein Analysis

119

Amino Acids

13.66

Weight (kDa)

9.03

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	42 - 113	4.8e-25	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56150 AT3G56150
fragaria_vesca	FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_6g21351 FvH4_6g21351 FvH4_6g21360 FvH4_6g21360 FvH4_6g21360
malus_domestica	MD05G1153900.v1.1 MD08G1196100.v1.1 MD12G1050600.v1.1 MD15G1383900.v1.1
prunus_persica	Prupe.1G530000_v2.0.a1 Prupe.7G086100_v2.0.a1 Prupe.7G086100_v2.0.a1
pyrus_communis	pycom08g16830 pycom12g04510 pycom15g34350
rosa_chinensis	RchiOBHm_Chr3g0477961 RchiOBHm_Chr3g0477971 RchiOBHm_Chr7g0236891
rosa_laevigata	RLG00000001050 RLG00000023675 RLG00000023676
rosa_multiflora	Rmu_co8284977.1_g000001 Rmu_co8517169.1_g000001 Rmu_sc0005991.1_g000006 Rmu_sc0010895.1_g000001 Rmu_sc0013727.1_g000003 Rmu_sc0028822.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032460 Rroxscaffold_1G00037610 Rroxscaffold_3G00224710 Rroxscaffold_6G00403560 Rroxscaffold_6G00403570
rosa_rugosa	Rorug03G0164400 Rorug03G0164500 Rorug03G0164600 Rorug03G0164700 Rorug03G0164800 Rorug03G0164900 Rorug07G0300800
rosa_samantha	Rh2AG276900 Rh3AG215100 Rh3AG215200 Rh3BG248700 Rh3BG248800 Rh3CG242600 Rh3CG242700 Rh3DG242000 Rh3DG242200 Rh3DG242300 Rh7AG455600 Rh7BG427000 Rh7CG474300 Rh7DG443500
rosa_wichuraiana	Rw0G010140 Rw0G010150 Rw3G019380 Rw3G019390 Rw7G037820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	2 cut(s)	260, 349
AluI	AGCT	2 cut(s)	260, 349
AlwI	GGATC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	84
Asp700I	GAANNNNTTC	2 cut(s)	320, 333
AspLEI	GCGC	2 cut(s)	29, 344
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	3 cut(s)	197, 208, 221
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BisI	GCNGC	1 cut(s)	85
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	337
Bpu1102I	GCTNAGC	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	109, 247
Bsp143I	GATC	1 cut(s)	141
Bsp1720I	GCTNAGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	98
BssMI	GATC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	79
Bst6I	CTCTTC	2 cut(s)	242, 326
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	345
BstHHI	GCGC	2 cut(s)	29, 344
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	2 cut(s)	29, 344
Cfr13I	GGNCC	1 cut(s)	253
CviAII	CATG	2 cut(s)	124, 128
CviJI	RGCY	4 cut(s)	107, 115, 260, 349
CviKI_1	RGCY	4 cut(s)	107, 115, 260, 349
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	113
Eam1104I	CTCTTC	2 cut(s)	242, 326
EarI	CTCTTC	2 cut(s)	242, 326
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	2 cut(s)	127, 131
FaiI	YATR	5 cut(s)	65, 125, 129, 180, 302
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	2 cut(s)	123, 127
Fnu4HI	GCNGC	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	85
GlaI	GCGC	2 cut(s)	28, 343
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	337
HaeIII	GGCC	1 cut(s)	115
HhaI	GCGC	2 cut(s)	29, 344
Hin1II	CATG	2 cut(s)	127, 131
Hin6I	GCGC	2 cut(s)	27, 342
HinP1I	GCGC	2 cut(s)	27, 342
HphI	GGTGA	3 cut(s)	197, 208, 221
Hpy188III	TCNNGA	3 cut(s)	251, 263, 354
HpyAV	CCTTC	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	17, 127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	127, 131
HspAI	GCGC	2 cut(s)	27, 342
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	3 cut(s)	226, 236, 319
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	164, 185
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	5 cut(s)	55, 143, 229, 278, 313
MhlI	GDGCHC	2 cut(s)	109, 247
MlsI	TGGCCA	1 cut(s)	115
MluNI	TGGCCA	1 cut(s)	115
MnlI	CCTC	5 cut(s)	33, 88, 192, 329, 335
Mox20I	TGGCCA	1 cut(s)	115
Mph1103I	ATGCAT	1 cut(s)	129
MroXI	GAANNNNTTC	2 cut(s)	320, 333
MscI	TGGCCA	1 cut(s)	115
Msp20I	TGGCCA	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	2 cut(s)	127, 131
NmuCI	GTSAC	2 cut(s)	164, 185
NsiI	ATGCAT	1 cut(s)	129
PaeR7I	CTCGAG	1 cut(s)	261
PdmI	GAANNNNTTC	2 cut(s)	320, 333
PkrI	GCNGC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	253
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	253
SduI	GDGCHC	2 cut(s)	109, 247
SetI	ASST	8 cut(s)	52, 70, 187, 203, 221, 262, 321, 351
SfaNI	GCATC	1 cut(s)	329
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
TaqI	TCGA	4 cut(s)	140, 262, 327, 337
TseFI	GTSAC	2 cut(s)	164, 185
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	2 cut(s)	164, 185
TspDTI	ATGAA	2 cut(s)	17, 144
VpaK11BI	GGWCC	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	320, 333
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.