Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8284977.1

Orthogroup ID

OG0000938

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 857

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8284977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 776 bp

gaaaggttggagaggagacgacaaatgccttaccatatgcacattaaccctgagctcttggaggcagtgcatctgatatgtgccatgctgctggaagtgcctaacatggcagctaacatctttgatgcaaagcgaagattgattagtaagacattcaggcggttgcttgagattagcgagaagcaaactttcacagggccccctgaaaatgtcagggaccatgtaatggcagcaaccagggcccttgtcaagggtgacttccagaaggcttttgatgtcatcaattctcttgatgtttggaagcttctgaagaatcgtgagaatgttctagagatgctcaagtgtaagatcaaggaagaggctctgaggacctacctctttaccttttcctcgtcctataagactctcagcttggaacaagttgccatgatgtttgacctttcagaggcgcagactcatagcattgtgagcaagatgatgatcaatgaagagctccttgcaagctgggaccaaccaacacgttgcattgttttccatgacgtagcccacagtaggttgcaggccttagctttccagttgactgagaagttgtcaatccttgcagaaagcaatgaaagagctacagaagcaaggataggtggcggtggattagatctgcctcaaaagcgtagagacaaccaggactatgctgctgggggtggtggcagatggcaagacaacaatctgtctttcaatcaaaggcaaggaggtggctctgggcgtacaggatataacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031369 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI eIF-3c_N

Protein Analysis

258

Amino Acids

29.47

Weight (kDa)

8.75

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56150 AT3G56150
fragaria_vesca	FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_6g21351 FvH4_6g21351 FvH4_6g21360 FvH4_6g21360 FvH4_6g21360
malus_domestica	MD05G1153900.v1.1 MD08G1196100.v1.1 MD12G1050600.v1.1 MD15G1383900.v1.1
prunus_persica	Prupe.1G530000_v2.0.a1 Prupe.7G086100_v2.0.a1 Prupe.7G086100_v2.0.a1
pyrus_communis	pycom08g16830 pycom12g04510 pycom15g34350
rosa_chinensis	RchiOBHm_Chr3g0477961 RchiOBHm_Chr3g0477971 RchiOBHm_Chr7g0236891
rosa_laevigata	RLG00000001050 RLG00000023675 RLG00000023676
rosa_multiflora	Rmu_co8284977.1_g000001 Rmu_co8517169.1_g000001 Rmu_sc0005991.1_g000006 Rmu_sc0010895.1_g000001 Rmu_sc0013727.1_g000003 Rmu_sc0028822.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032460 Rroxscaffold_1G00037610 Rroxscaffold_3G00224710 Rroxscaffold_6G00403560 Rroxscaffold_6G00403570
rosa_rugosa	Rorug03G0164400 Rorug03G0164500 Rorug03G0164600 Rorug03G0164700 Rorug03G0164800 Rorug03G0164900 Rorug07G0300800
rosa_samantha	Rh2AG276900 Rh3AG215100 Rh3AG215200 Rh3BG248700 Rh3BG248800 Rh3CG242600 Rh3CG242700 Rh3DG242000 Rh3DG242200 Rh3DG242300 Rh7AG455600 Rh7BG427000 Rh7CG474300 Rh7DG443500
rosa_wichuraiana	Rw0G010140 Rw0G010150 Rw3G019380 Rw3G019390 Rw7G037820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AciI	CCGC	2 cut(s)	160, 642
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	763
AfiI	CCNNNNNNNGG	4 cut(s)	226, 250, 445, 552
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	1 cut(s)	733
AjnI	CCWGG	2 cut(s)	236, 678
AluBI	AGCT	8 cut(s)	55, 113, 304, 411, 493, 504, 569, 620
AluI	AGCT	8 cut(s)	55, 113, 304, 411, 493, 504, 569, 620
Alw21I	GWGCWC	2 cut(s)	57, 495
Alw26I	GTCTC	2 cut(s)	10, 666
AoxI	GGCC	3 cut(s)	197, 240, 561
ApaI	GGGCCC	2 cut(s)	201, 244
ApeKI	GCWGC	4 cut(s)	88, 110, 230, 689
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	7 cut(s)	197, 198, 217, 240, 241, 369, 508
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	3 cut(s)	217, 369, 508
BaeGI	GKGCMC	2 cut(s)	201, 244
BanII	GRGCYC	4 cut(s)	57, 201, 244, 495
Bbv12I	GWGCWC	2 cut(s)	57, 495
BbvI	GCAGC	4 cut(s)	75, 122, 242, 676
BccI	CCATC	1 cut(s)	702
BciT130I	CCWGG	2 cut(s)	238, 680
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	2 cut(s)	10, 666
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	621
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	4 cut(s)	89, 111, 231, 690
BlsI	GCNGC	4 cut(s)	90, 112, 232, 691
Bme1390I	CCNGG	2 cut(s)	238, 680
Bme18I	GGWCC	3 cut(s)	217, 369, 508
BmgT120I	GGNCC	7 cut(s)	197, 198, 217, 240, 241, 369, 508
BmiI	GGNNCC	5 cut(s)	199, 200, 218, 242, 509
BmrFI	CCNGG	2 cut(s)	238, 680
BmsI	GCATC	3 cut(s)	79, 115, 324
Bpu10I	CCTNAGC	2 cut(s)	51, 565
BpuEI	CTTGAG	2 cut(s)	188, 323
BsaBI	GATNNNNATC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 250, 445, 552
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	616
Bse8I	GATNNNNATC	1 cut(s)	479
BseBI	CCWGG	2 cut(s)	238, 680
BseDI	CCNNGG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	4 cut(s)	226, 250, 445, 552
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	4 cut(s)	42, 356, 421, 573
BseNI	ACTGG	1 cut(s)	574
BseRI	GAGGAG	1 cut(s)	28
BseSI	GKGCMC	2 cut(s)	201, 244
BseXI	GCAGC	4 cut(s)	75, 122, 242, 676
BseYI	CCCAGC	2 cut(s)	504, 692
BshFI	GGCC	3 cut(s)	199, 242, 563
BsiHKAI	GWGCWC	2 cut(s)	57, 495
BslFI	GGGAC	2 cut(s)	230, 521
BslI	CCNNNNNNNGG	4 cut(s)	226, 250, 445, 552
BsmAI	GTCTC	2 cut(s)	10, 666
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	2 cut(s)	230, 521
BsnI	GGCC	3 cut(s)	199, 242, 563
Bsp120I	GGGCCC	2 cut(s)	197, 240
Bsp1286I	GDGCHC	4 cut(s)	57, 201, 244, 495
Bsp143I	GATC	3 cut(s)	348, 480, 652
BspACI	CCGC	2 cut(s)	160, 642
BspANI	GGCC	3 cut(s)	199, 242, 563
BspCNI	CTCAG	4 cut(s)	43, 357, 420, 574
BspLI	GGNNCC	5 cut(s)	199, 200, 218, 242, 509
BspQI	GCTCTTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	3 cut(s)	348, 480, 652
Bst2UI	CCWGG	2 cut(s)	238, 680
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	2 cut(s)	351, 483
BstC8I	GCNNGC	2 cut(s)	502, 561
BstDEI	CTNAG	5 cut(s)	51, 365, 407, 565, 582
BstENI	CCTNNNNNAGG	2 cut(s)	248, 443
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	3 cut(s)	351, 483, 655
BstMAI	GTCTC	2 cut(s)	10, 666
BstMBI	GATC	3 cut(s)	348, 480, 652
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 239, 468, 626, 664
BstNI	CCWGG	2 cut(s)	238, 680
BstSCI	CCNGG	2 cut(s)	236, 678
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	2 cut(s)	201, 244
BstV1I	GCAGC	4 cut(s)	75, 122, 242, 676
BstX2I	RGATCY	1 cut(s)	652
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	199, 242, 563
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	502, 561
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	7 cut(s)	197, 198, 217, 240, 241, 369, 508
Csp6I	GTAC	1 cut(s)	762
CviAII	CATG	5 cut(s)	85, 106, 221, 427, 536
CviQI	GTAC	1 cut(s)	762
DdeI	CTNAG	5 cut(s)	51, 365, 407, 565, 582
DpnI	GATC	3 cut(s)	350, 482, 654
DpnII	GATC	3 cut(s)	348, 480, 652
Eam1104I	CTCTTC	2 cut(s)	351, 483
EarI	CTCTTC	2 cut(s)	351, 483
Ecl136II	GAGCTC	2 cut(s)	55, 493
Eco147I	AGGCCT	1 cut(s)	563
Eco24I	GRGCYC	4 cut(s)	57, 201, 244, 495
Eco47I	GGWCC	3 cut(s)	217, 369, 508
Eco53kI	GAGCTC	2 cut(s)	55, 493
Eco57I	CTGAAG	1 cut(s)	329
EcoICRI	GAGCTC	2 cut(s)	55, 493
EcoNI	CCTNNNNNAGG	2 cut(s)	248, 443
EcoO109I	RGGNCCY	5 cut(s)	197, 198, 240, 241, 369
EcoRII	CCWGG	2 cut(s)	236, 678
EcoT38I	GRGCYC	4 cut(s)	57, 201, 244, 495
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	5 cut(s)	88, 109, 224, 430, 539
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 480, 512
FaqI	GGGAC	2 cut(s)	230, 521
FatI	CATG	5 cut(s)	84, 105, 220, 426, 535
FauNDI	CATATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	89, 111, 231, 690
FriOI	GRGCYC	4 cut(s)	57, 201, 244, 495
Fsp4HI	GCNGC	4 cut(s)	89, 111, 231, 690
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	4 cut(s)	89, 111, 231, 690
GsaI	CCCAGC	2 cut(s)	508, 696
HaeIII	GGCC	3 cut(s)	199, 242, 563
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	5 cut(s)	88, 109, 224, 430, 539
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	3 cut(s)	313, 403, 454
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	4 cut(s)	75, 309, 366, 445
Hpy188III	TCNNGA	4 cut(s)	262, 290, 317, 329
Hpy8I	GTNNAC	1 cut(s)	579
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	2 cut(s)	520, 540
HpyCH4V	TGCA	7 cut(s)	40, 70, 128, 500, 525, 559, 602
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 239, 468, 626, 664
HpyF3I	CTNAG	5 cut(s)	51, 365, 407, 565, 582
HpySE526I	ACGT	2 cut(s)	520, 540
Hsp92II	CATG	5 cut(s)	88, 109, 224, 430, 539
HspAI	GCGC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	348, 480, 652
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	498
Lsp1109I	GCAGC	4 cut(s)	75, 122, 242, 676
LweI	GCATC	3 cut(s)	79, 115, 324
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	520, 540
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	3 cut(s)	350, 482, 654
MboI	GATC	3 cut(s)	348, 480, 652
MboII	GAAGA	4 cut(s)	147, 322, 368, 500
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	4 cut(s)	57, 201, 244, 495
MluCI	AATT	1 cut(s)	283
MlyI	GAGTC	2 cut(s)	397, 448
MnlI	CCTC	9 cut(s)	6, 55, 352, 360, 386, 400, 439, 669, 740
MseI	TTAA	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	238, 680
MvaI	CCWGG	2 cut(s)	238, 680
MwoI	GCNNNNNNNGC	5 cut(s)	97, 239, 468, 626, 664
NdeI	CATATG	1 cut(s)	36
NdeII	GATC	3 cut(s)	348, 480, 652
NlaIII	CATG	5 cut(s)	88, 109, 224, 430, 539
NlaIV	GGNNCC	5 cut(s)	199, 200, 218, 242, 509
NmuCI	GTSAC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	90, 112, 232, 691
PleI	GAGTC	2 cut(s)	397, 448
PpsI	GAGTC	2 cut(s)	397, 448
PpuMI	RGGWCCY	1 cut(s)	369
Psp124BI	GAGCTC	2 cut(s)	57, 495
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	236, 678
PspFI	CCCAGC	2 cut(s)	504, 692
PspGI	CCWGG	2 cut(s)	236, 678
PspN4I	GGNNCC	5 cut(s)	199, 200, 218, 242, 509
PspOMI	GGGCCC	2 cut(s)	197, 240
PspPI	GGNCC	7 cut(s)	197, 198, 217, 240, 241, 369, 508
PspPPI	RGGWCCY	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	1 cut(s)	763
RsaNI	GTAC	1 cut(s)	762
SacI	GAGCTC	2 cut(s)	57, 495
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	4 cut(s)	89, 111, 231, 690
Sau3AI	GATC	3 cut(s)	348, 480, 652
Sau96I	GGNCC	7 cut(s)	197, 198, 217, 240, 241, 369, 508
SchI	GAGTC	2 cut(s)	397, 448
ScrFI	CCNGG	2 cut(s)	238, 680
SduI	GDGCHC	4 cut(s)	57, 201, 244, 495
SfaNI	GCATC	3 cut(s)	79, 115, 324
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	3 cut(s)	217, 369, 508
SmlI	CTYRAG	2 cut(s)	167, 338
SmoI	CTYRAG	2 cut(s)	167, 338
Sse9I	AATT	1 cut(s)	283
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	2 cut(s)	160, 642
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	2 cut(s)	57, 495
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	236, 678
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	2 cut(s)	523, 543
TasI	AATT	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	88, 110, 230, 689
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	501, 627
TspRI	CASTG	1 cut(s)	72
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	3 cut(s)	217, 369, 508
XagI	CCTNNNNNAGG	2 cut(s)	248, 443
XbaI	TCTAGA	1 cut(s)	328
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.