Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010895.1

Orthogroup ID

OG0000938

Physical Location & Seq

Genomic Coordinates Forward (+)

1043 .. 1687

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010895.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgctcaagtgtaagatcaaggaagaggctctgaggacctacctctttaccttttcctcgtcctataagactctcatcttggaacaagttgtcatgatgtttgacctttcagaggcgcagactcatagcattgtgagcaagatgatgatcaatgaagagctccttgcaagctgggaccaaccaacacgttgcattgttttccatgacgtagcccacagtaggttgcaggccttagctttccagttgactgagaagttgtcaatccttgcagaaagcaatgaaagagctacagaagcaaggataggtggcggtggattagatctgcctcaaaagcgtagagacaaccaggactatgctgctgggggtggtggcagatggcaagacaacaatctgtctttcaatcaaaggcaaggaggtggctctgggcgtacaggatataacagtggagggagacaatatggccaagctgctggaggtgggtattctagagaccgcacaggtcagtccaggggaactggtcagaacactcgatatcaagatgctgcatatgctggctctgggaggactggctaccagacagctgcaaggggatctcaggatacttcatctcgcatggtcaatctacatagggggcttcgcgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031369 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI eIF-3c_N

Protein Analysis

214

Amino Acids

23.53

Weight (kDa)

9.57

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56150 AT3G56150
fragaria_vesca	FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_5g35510 FvH4_6g21351 FvH4_6g21351 FvH4_6g21360 FvH4_6g21360 FvH4_6g21360
malus_domestica	MD05G1153900.v1.1 MD08G1196100.v1.1 MD12G1050600.v1.1 MD15G1383900.v1.1
prunus_persica	Prupe.1G530000_v2.0.a1 Prupe.7G086100_v2.0.a1 Prupe.7G086100_v2.0.a1
pyrus_communis	pycom08g16830 pycom12g04510 pycom15g34350
rosa_chinensis	RchiOBHm_Chr3g0477961 RchiOBHm_Chr3g0477971 RchiOBHm_Chr7g0236891
rosa_laevigata	RLG00000001050 RLG00000023675 RLG00000023676
rosa_multiflora	Rmu_co8284977.1_g000001 Rmu_co8517169.1_g000001 Rmu_sc0005991.1_g000006 Rmu_sc0010895.1_g000001 Rmu_sc0013727.1_g000003 Rmu_sc0028822.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032460 Rroxscaffold_1G00037610 Rroxscaffold_3G00224710 Rroxscaffold_6G00403560 Rroxscaffold_6G00403570
rosa_rugosa	Rorug03G0164400 Rorug03G0164500 Rorug03G0164600 Rorug03G0164700 Rorug03G0164800 Rorug03G0164900 Rorug07G0300800
rosa_samantha	Rh2AG276900 Rh3AG215100 Rh3AG215200 Rh3BG248700 Rh3BG248800 Rh3CG242600 Rh3CG242700 Rh3DG242000 Rh3DG242200 Rh3DG242300 Rh7AG455600 Rh7BG427000 Rh7CG474300 Rh7DG443500
rosa_wichuraiana	Rw0G010140 Rw0G010150 Rw3G019380 Rw3G019390 Rw7G037820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	639
AciI	CCGC	2 cut(s)	309, 493
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	460
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	2 cut(s)	112, 219
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	2 cut(s)	345, 506
AluBI	AGCT	6 cut(s)	160, 171, 236, 287, 467, 581
AluI	AGCT	6 cut(s)	160, 171, 236, 287, 467, 581
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	3 cut(s)	333, 445, 483
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	2 cut(s)	228, 460
ApeKI	GCWGC	4 cut(s)	356, 467, 542, 581
AspLEI	GCGC	2 cut(s)	118, 641
AspS9I	GGNCC	2 cut(s)	36, 175
AvaII	GGWCC	2 cut(s)	36, 175
BalI	TGGCCA	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	343, 454, 529, 568
BccI	CCATC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	347, 508
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	3 cut(s)	333, 445, 483
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	592
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	4 cut(s)	357, 468, 543, 582
BlsI	GCNGC	4 cut(s)	358, 469, 544, 583
Bme1390I	CCNGG	2 cut(s)	347, 508
Bme18I	GGWCC	2 cut(s)	36, 175
BmgT120I	GGNCC	2 cut(s)	36, 175
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	347, 508
BmsI	GCATC	1 cut(s)	529
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 219
Bse1I	ACTGG	3 cut(s)	241, 520, 571
Bse3DI	GCAATG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	347, 508
BseDI	CCNNGG	1 cut(s)	507
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	112, 219
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	3 cut(s)	23, 240, 608
BseNI	ACTGG	3 cut(s)	241, 520, 571
BseXI	GCAGC	4 cut(s)	343, 454, 529, 568
BseYI	CCCAGC	2 cut(s)	171, 359
Bsh1236I	CGCG	1 cut(s)	639
BshFI	GGCC	2 cut(s)	230, 462
BsiHKAI	GWGCWC	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	112, 219
BsmAI	GTCTC	3 cut(s)	333, 445, 483
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	230, 462
Bso31I	GGTCTC	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	4 cut(s)	15, 147, 319, 590
BspACI	CCGC	2 cut(s)	309, 493
BspANI	GGCC	2 cut(s)	230, 462
BspCNI	CTCAG	3 cut(s)	24, 241, 607
BspFNI	CGCG	1 cut(s)	639
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	283
BsrI	ACTGG	3 cut(s)	241, 520, 571
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	4 cut(s)	15, 147, 319, 590
Bst2UI	CCWGG	2 cut(s)	347, 508
Bst4CI	ACNGT	2 cut(s)	218, 443
Bst6I	CTCTTC	2 cut(s)	18, 150
BstC8I	GCNNGC	3 cut(s)	169, 228, 553
BstDEI	CTNAG	4 cut(s)	32, 232, 249, 594
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	639
BstHHI	GCGC	2 cut(s)	118, 641
BstKTI	GATC	4 cut(s)	18, 150, 322, 593
BstMAI	GTCTC	3 cut(s)	333, 445, 483
BstMBI	GATC	4 cut(s)	15, 147, 319, 590
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 293, 331, 548
BstNI	CCWGG	2 cut(s)	347, 508
BstSCI	CCNGG	2 cut(s)	345, 506
BstSFI	CTRYAG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	4 cut(s)	343, 454, 529, 568
BstX2I	RGATCY	2 cut(s)	319, 590
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	319, 590
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	230, 462
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	169, 228, 553
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	2 cut(s)	118, 641
Cfr13I	GGNCC	2 cut(s)	36, 175
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	3 cut(s)	94, 203, 613
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	4 cut(s)	32, 232, 249, 594
DpnI	GATC	4 cut(s)	17, 149, 321, 592
DpnII	GATC	4 cut(s)	15, 147, 319, 590
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	2 cut(s)	18, 150
EarI	CTCTTC	2 cut(s)	18, 150
Ecl136II	GAGCTC	1 cut(s)	160
Eco147I	AGGCCT	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	483
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	2 cut(s)	36, 175
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	345, 506
EcoRV	GATATC	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	3 cut(s)	97, 206, 616
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	3 cut(s)	93, 202, 612
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	357, 468, 543, 582
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	4 cut(s)	357, 468, 543, 582
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	2 cut(s)	117, 640
GluI	GCNGC	4 cut(s)	357, 468, 543, 582
GsaI	CCCAGC	2 cut(s)	175, 363
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	230, 462
HhaI	GCGC	2 cut(s)	118, 641
Hin1II	CATG	3 cut(s)	97, 206, 616
Hin6I	GCGC	2 cut(s)	116, 639
HinP1I	GCGC	2 cut(s)	116, 639
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	70, 121
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	3 cut(s)	33, 112, 522
Hpy188III	TCNNGA	4 cut(s)	94, 486, 536, 596
Hpy8I	GTNNAC	1 cut(s)	246
HpyCH4III	ACNGT	2 cut(s)	218, 443
HpyCH4IV	ACGT	2 cut(s)	187, 207
HpyCH4V	TGCA	6 cut(s)	167, 192, 226, 269, 545, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 293, 331, 548
HpyF3I	CTNAG	4 cut(s)	32, 232, 249, 594
HpySE526I	ACGT	2 cut(s)	187, 207
Hsp92II	CATG	3 cut(s)	97, 206, 616
HspAI	GCGC	2 cut(s)	116, 639
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	15, 147, 319, 590
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	4 cut(s)	343, 454, 529, 568
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	2 cut(s)	187, 207
MalI	GATC	4 cut(s)	17, 149, 321, 592
MboI	GATC	4 cut(s)	15, 147, 319, 590
MboII	GAAGA	2 cut(s)	35, 167
MflI	RGATCY	2 cut(s)	319, 590
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	462
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	64, 115
Mox20I	TGGCCA	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	581
MspR9I	CCNGG	2 cut(s)	347, 508
MvaI	CCWGG	2 cut(s)	347, 508
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	4 cut(s)	135, 293, 331, 548
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	4 cut(s)	15, 147, 319, 590
NlaIII	CATG	3 cut(s)	97, 206, 616
NlaIV	GGNNCC	1 cut(s)	176
PagI	TCATGA	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	358, 469, 544, 583
PleI	GAGTC	2 cut(s)	64, 115
PpsI	GAGTC	2 cut(s)	64, 115
PpuMI	RGGWCCY	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	345, 506
PspFI	CCCAGC	2 cut(s)	171, 359
PspGI	CCWGG	2 cut(s)	345, 506
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	36, 175
PspPPI	RGGWCCY	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	319, 590
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	150
SatI	GCNGC	4 cut(s)	357, 468, 543, 582
Sau3AI	GATC	4 cut(s)	15, 147, 319, 590
Sau96I	GGNCC	2 cut(s)	36, 175
SchI	GAGTC	2 cut(s)	64, 115
ScrFI	CCNGG	2 cut(s)	347, 508
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	2 cut(s)	36, 175
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	309, 493
SspMI	CTAG	1 cut(s)	486
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	345, 506
TaaI	ACNGT	2 cut(s)	218, 443
TaiI	ACGT	2 cut(s)	190, 210
TaqI	TCGA	1 cut(s)	529
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	4 cut(s)	356, 467, 542, 581
TspDTI	ATGAA	3 cut(s)	168, 294, 594
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	2 cut(s)	36, 175
XagI	CCTNNNNNAGG	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	485
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.