Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010227

Physical Location & Seq

Genomic Coordinates Forward (+)

5480183 .. 5480509

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCTCCGCCAGCGCCTCGTCCAGGCACTCCGAACCCGCGGCGGCTCAGCCACCGGTCCGAGCCGGTGGACCAGCCCGGGCCACGAGGAACGAACCAAAGGCTACCTCTTCAATCGGACCCCGCTCCCCCCAGGTCAGTCTCGTAAATGGGAGGACTGGGAGCTCCCCTGCTACGTCACCAGCTTCCTCACCATCGTCATCCTCGGCGTCGGCCTCAACGCTAAGCCCGATCTCACCATCGAGACTTGGGCCCACCAGAAAGCCCTCGAACGGCTCGAGATCGAGCAGGCCAGCCTCTCTGTTGCTGGGTCGGCTGAATCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.06

Weight (kDa)

7.93

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42310 AT3G57785
fragaria_vesca	FvH4_6g22990 FvH4_6g22990
malus_domestica	MD07G1000900.v1.1 MD12G1064300.v1.1 MD14G1064400.v1.1
prunus_persica	Prupe.7G069800_v2.0.a1
pyrus_communis	pycom12g05610
rosa_chinensis	RchiOBHm_Chr3g0480781
rosa_multiflora	Rmu_sc0003902.1_g000009 Rmu_sc0007944.1_g000003
rosa_roxburghii	Rroxscaffold_6G00401070
rosa_rugosa	Rorug03G0186400 Rorug07G0300800
rosa_samantha	Rh3AG237900 Rh3BG271500 Rh3CG267400 Rh3DG263500 Rh7BG426900
rosa_wichuraiana	Rw3G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	1 cut(s)	39
AciI	CCGC	5 cut(s)	7, 37, 39, 42, 122
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	22, 270
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	21, 130
AluBI	AGCT	2 cut(s)	163, 183
AluI	AGCT	2 cut(s)	163, 183
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	144, 236
Ama87I	CYCGRG	2 cut(s)	76, 275
AoxI	GGCC	4 cut(s)	79, 211, 249, 288
ApaI	GGGCCC	1 cut(s)	253
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	6 cut(s)	56, 69, 79, 117, 249, 250
AsuC2I	CCSGG	2 cut(s)	77, 78
AsuHPI	GGTGA	3 cut(s)	169, 181, 226
AvaI	CYCGRG	2 cut(s)	76, 275
AvaII	GGWCC	3 cut(s)	56, 69, 117
BaeGI	GKGCMC	1 cut(s)	253
BanII	GRGCYC	2 cut(s)	165, 253
BauI	CACGAG	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	165
BccI	CCATC	2 cut(s)	200, 245
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	2 cut(s)	23, 132
BcnI	CCSGG	2 cut(s)	77, 78
BcoDI	GTCTC	2 cut(s)	144, 236
BfoI	RGCGCY	1 cut(s)	16
BisI	GCNGC	2 cut(s)	40, 43
BlpI	GCTNAGC	2 cut(s)	46, 222
BlsI	GCNGC	2 cut(s)	41, 44
Bme1390I	CCNGG	4 cut(s)	23, 77, 78, 132
Bme18I	GGWCC	3 cut(s)	56, 69, 117
BmeT110I	CYCGRG	2 cut(s)	76, 275
BmgT120I	GGNCC	6 cut(s)	56, 69, 79, 117, 249, 250
BmiI	GGNNCC	2 cut(s)	119, 251
BmrFI	CCNGG	4 cut(s)	23, 77, 78, 132
BmrI	ACTGGG	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	166
Bpu1102I	GCTNAGC	2 cut(s)	46, 222
BpuMI	CCSGG	2 cut(s)	77, 78
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	4 cut(s)	37, 76, 130, 202
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 270
Bse118I	RCCGGY	2 cut(s)	53, 63
Bse1I	ACTGG	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	23, 132
BseDI	CCNNGG	4 cut(s)	37, 76, 130, 202
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	22, 270
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	81, 213, 251, 290
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	2 cut(s)	76, 275
BsiSI	CCGG	3 cut(s)	54, 64, 77
BslI	CCNNNNNNNGG	2 cut(s)	22, 270
BsmAI	GTCTC	2 cut(s)	144, 236
BsnI	GGCC	4 cut(s)	81, 213, 251, 290
BsoBI	CYCGRG	2 cut(s)	76, 275
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	165, 253
Bsp143I	GATC	2 cut(s)	229, 279
Bsp1720I	GCTNAGC	2 cut(s)	46, 222
BspACI	CCGC	5 cut(s)	7, 37, 39, 42, 122
BspANI	GGCC	4 cut(s)	81, 213, 251, 290
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	119, 251
BsrBI	CCGCTC	1 cut(s)	124
BsrFI	RCCGGY	2 cut(s)	53, 63
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	2 cut(s)	53, 63
BssECI	CCNNGG	4 cut(s)	37, 76, 130, 202
BssMI	GATC	2 cut(s)	229, 279
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	23, 132
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	11, 288, 292
BstDEI	CTNAG	2 cut(s)	46, 222
BstDSI	CCRYGG	1 cut(s)	37
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	2 cut(s)	232, 282
BstMAI	GTCTC	2 cut(s)	144, 236
BstMBI	GATC	2 cut(s)	229, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 311
BstNI	CCWGG	2 cut(s)	23, 132
BstSCI	CCNGG	4 cut(s)	21, 75, 76, 130
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	81, 213, 251, 290
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	198
Cac8I	GCNNGC	3 cut(s)	11, 288, 292
CfoI	GCGC	1 cut(s)	15
Cfr10I	RCCGGY	2 cut(s)	53, 63
Cfr13I	GGNCC	6 cut(s)	56, 69, 79, 117, 249, 250
Cfr42I	CCGCGG	1 cut(s)	40
Cfr9I	CCCGGG	1 cut(s)	76
CpoI	CGGWCCG	1 cut(s)	56
CseI	GACGC	1 cut(s)	196
CspAI	ACCGGT	1 cut(s)	53
CspI	CGGWCCG	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	46, 222
DpnI	GATC	2 cut(s)	231, 281
DpnII	GATC	2 cut(s)	229, 279
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	2 cut(s)	165, 253
Eco47I	GGWCC	3 cut(s)	56, 69, 117
Eco53kI	GAGCTC	1 cut(s)	163
Eco88I	CYCGRG	2 cut(s)	76, 275
EcoICRI	GAGCTC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	21, 130
EcoT38I	GRGCYC	2 cut(s)	165, 253
FauI	CCCGC	2 cut(s)	44, 129
Fnu4HI	GCNGC	2 cut(s)	40, 43
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	2 cut(s)	165, 253
Fsp4HI	GCNGC	2 cut(s)	40, 43
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	2 cut(s)	40, 43
GsaI	CCCAGC	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	4 cut(s)	81, 213, 251, 290
HapII	CCGG	3 cut(s)	54, 64, 77
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	3 cut(s)	54, 64, 77
HphI	GGTGA	3 cut(s)	169, 181, 226
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	4 cut(s)	32, 60, 117, 322
Hpy188III	TCNNGA	2 cut(s)	241, 277
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 311
HpyF3I	CTNAG	2 cut(s)	46, 222
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	207
HspAI	GCGC	1 cut(s)	13
KspI	CCGCGG	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	229, 279
LmnI	GCTCC	4 cut(s)	9, 129, 160, 168
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	231, 281
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	2 cut(s)	229, 279
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	165, 253
MnlI	CCTC	9 cut(s)	26, 79, 116, 145, 197, 212, 224, 275, 305
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	3 cut(s)	54, 64, 77
MspR9I	CCNGG	4 cut(s)	23, 77, 78, 132
MvaI	CCWGG	2 cut(s)	23, 132
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	10, 311
NciI	CCSGG	2 cut(s)	77, 78
NdeII	GATC	2 cut(s)	229, 279
NlaIV	GGNNCC	2 cut(s)	119, 251
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 273
PfeI	GAWTC	1 cut(s)	317
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	41, 44
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	21, 130
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	21, 130
PspN4I	GGNNCC	2 cut(s)	119, 251
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	6 cut(s)	56, 69, 79, 117, 249, 250
Rsr2I	CGGWCCG	1 cut(s)	56
RsrII	CGGWCCG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	165
SacII	CCGCGG	1 cut(s)	40
SatI	GCNGC	2 cut(s)	40, 43
Sau3AI	GATC	2 cut(s)	229, 279
Sau96I	GGNCC	6 cut(s)	56, 69, 79, 117, 249, 250
ScrFI	CCNGG	4 cut(s)	23, 77, 78, 132
SduI	GDGCHC	2 cut(s)	165, 253
SetI	ASST	5 cut(s)	108, 136, 165, 177, 185
Sfr274I	CTCGAG	1 cut(s)	275
Sfr303I	CCGCGG	1 cut(s)	40
SgrBI	CCGCGG	1 cut(s)	40
SinI	GGWCC	3 cut(s)	56, 69, 117
SlaI	CTCGAG	1 cut(s)	275
SmaI	CCCGGG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SrfI	GCCCGGGC	1 cut(s)	78
SsiI	CCGC	5 cut(s)	7, 37, 39, 42, 122
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	4 cut(s)	21, 75, 76, 130
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	4 cut(s)	240, 267, 276, 282
TauI	GCSGC	2 cut(s)	42, 45
TfiI	GAWTC	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspMI	CCCGGG	1 cut(s)	76
VpaK11BI	GGWCC	3 cut(s)	56, 69, 117
XagI	CCTNNNNNAGG	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	275
XmaI	CCCGGG	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.