Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010227

Physical Location & Seq

Genomic Coordinates Forward (+)

24673625 .. 24675227

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG237900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCTCCGCCAGCGCCTCATCCAAACCCTCCGAACCCGCGGCGGCTCCGCCACCGGTCCGAGCCGCTGGACCAGTCCCGGCCACGAAGAACAGCCCAAAGGCTACCTCTTCAACCGAACCCCTCTACCTCCAGGCCAGTCTCGAAAATGGGAGGATTGGGAGCTCCCCTGCTACGTCACCAGCTTCCTCACCATCGTCATCCTCGGCGTCGGACTCAATGCCAAGCCCGATCTCACCATCGAGACCTGGGCCCACCAGAAGGCCCTTGAGCGCCTCGAGATCGAGCAGGCCGGCCTTCCGGCTGAATCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.75

Weight (kDa)

6.74

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42310 AT3G57785
fragaria_vesca	FvH4_6g22990 FvH4_6g22990
malus_domestica	MD07G1000900.v1.1 MD12G1064300.v1.1 MD14G1064400.v1.1
prunus_persica	Prupe.7G069800_v2.0.a1
pyrus_communis	pycom12g05610
rosa_chinensis	RchiOBHm_Chr3g0480781
rosa_multiflora	Rmu_sc0003902.1_g000009 Rmu_sc0007944.1_g000003
rosa_roxburghii	Rroxscaffold_6G00401070
rosa_rugosa	Rorug03G0186400 Rorug07G0300800
rosa_samantha	Rh3AG237900 Rh3BG271500 Rh3CG267400 Rh3DG263500 Rh7BG426900
rosa_wichuraiana	Rw3G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AciI	CCGC	6 cut(s)	7, 37, 39, 42, 48, 64
AcoI	YGGCCR	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	130, 245
AluBI	AGCT	2 cut(s)	163, 183
AluI	AGCT	2 cut(s)	163, 183
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	144, 236
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	6 cut(s)	79, 133, 249, 261, 288, 292
ApaI	GGGCCC	1 cut(s)	253
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	15, 273
AspS9I	GGNCC	5 cut(s)	56, 69, 249, 250, 262
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	3 cut(s)	169, 181, 226
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	56, 69
BaeGI	GKGCMC	1 cut(s)	253
BanII	GRGCYC	2 cut(s)	165, 253
Bbv12I	GWGCWC	1 cut(s)	165
BccI	CCATC	2 cut(s)	200, 245
BciT130I	CCWGG	2 cut(s)	132, 247
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	144, 236
BfoI	RGCGCY	2 cut(s)	16, 274
BisI	GCNGC	3 cut(s)	40, 43, 64
BlsI	GCNGC	3 cut(s)	41, 44, 65
Bme1390I	CCNGG	3 cut(s)	78, 132, 247
Bme18I	GGWCC	2 cut(s)	56, 69
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	5 cut(s)	56, 69, 249, 250, 262
BmiI	GGNNCC	2 cut(s)	46, 251
BmrFI	CCNGG	3 cut(s)	78, 132, 247
BpmI	CTGGAG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	37, 202, 246
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	2 cut(s)	53, 290
Bse1I	ACTGG	2 cut(s)	72, 136
BseBI	CCWGG	2 cut(s)	132, 247
BseDI	CCNNGG	3 cut(s)	37, 202, 246
BseGI	GGATG	2 cut(s)	18, 198
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	72, 136
BseSI	GKGCMC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	6 cut(s)	81, 135, 251, 263, 290, 294
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	4 cut(s)	54, 78, 291, 299
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	144, 236
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	6 cut(s)	81, 135, 251, 263, 290, 294
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	275
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	165, 253
Bsp143I	GATC	2 cut(s)	229, 279
BspACI	CCGC	6 cut(s)	7, 37, 39, 42, 48, 64
BspANI	GGCC	6 cut(s)	81, 135, 251, 263, 290, 294
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	46, 251
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	2 cut(s)	53, 290
BsrI	ACTGG	2 cut(s)	72, 136
BssAI	RCCGGY	2 cut(s)	53, 290
BssECI	CCNNGG	3 cut(s)	37, 202, 246
BssMI	GATC	2 cut(s)	229, 279
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	132, 247
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	11, 288, 292
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	18, 198
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	2 cut(s)	16, 274
BstHHI	GCGC	2 cut(s)	15, 273
BstKTI	GATC	2 cut(s)	232, 282
BstMAI	GTCTC	2 cut(s)	144, 236
BstMBI	GATC	2 cut(s)	229, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	132, 247
BstSCI	CCNGG	3 cut(s)	76, 130, 245
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	39
BsuRI	GGCC	6 cut(s)	81, 135, 251, 263, 290, 294
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	18, 198
Cac8I	GCNNGC	3 cut(s)	11, 288, 292
CfoI	GCGC	2 cut(s)	15, 273
Cfr10I	RCCGGY	2 cut(s)	53, 290
Cfr13I	GGNCC	5 cut(s)	56, 69, 249, 250, 262
Cfr42I	CCGCGG	1 cut(s)	40
CpoI	CGGWCCG	1 cut(s)	56
CseI	GACGC	1 cut(s)	196
CspAI	ACCGGT	1 cut(s)	53
CspI	CGGWCCG	1 cut(s)	56
DpnI	GATC	2 cut(s)	231, 281
DpnII	GATC	2 cut(s)	229, 279
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	2 cut(s)	165, 253
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	56, 69
Eco53kI	GAGCTC	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	130, 245
EcoT38I	GRGCYC	2 cut(s)	165, 253
FaqI	GGGAC	1 cut(s)	60
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	3 cut(s)	40, 43, 64
FokI	GGATG	2 cut(s)	5, 185
FriOI	GRGCYC	2 cut(s)	165, 253
FseI	GGCCGGCC	1 cut(s)	294
Fsp4HI	GCNGC	3 cut(s)	40, 43, 64
GlaI	GCGC	2 cut(s)	14, 272
GluI	GCNGC	3 cut(s)	40, 43, 64
GsuI	CTGGAG	1 cut(s)	114
HaeII	RGCGCY	2 cut(s)	16, 274
HaeIII	GGCC	6 cut(s)	81, 135, 251, 263, 290, 294
HapII	CCGG	4 cut(s)	54, 78, 291, 299
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	15, 273
Hin1I	GRCGYC	1 cut(s)	207
Hin6I	GCGC	2 cut(s)	13, 271
HinP1I	GCGC	2 cut(s)	13, 271
HinfI	GANTC	2 cut(s)	213, 305
HpaII	CCGG	4 cut(s)	54, 78, 291, 299
HphI	GGTGA	3 cut(s)	169, 181, 226
Hpy188I	TCNGA	4 cut(s)	32, 60, 212, 310
Hpy188III	TCNNGA	3 cut(s)	141, 241, 277
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	253, 305
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	207
HspAI	GCGC	2 cut(s)	13, 271
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
KspI	CCGCGG	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	229, 279
LmnI	GCTCC	4 cut(s)	9, 50, 160, 168
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	231, 281
MboI	GATC	2 cut(s)	229, 279
MboII	GAAGA	2 cut(s)	98, 100
MhlI	GDGCHC	2 cut(s)	165, 253
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	9 cut(s)	26, 38, 116, 132, 138, 145, 197, 212, 284
MroNI	GCCGGC	1 cut(s)	290
MspA1I	CMGCKG	2 cut(s)	39, 66
MspI	CCGG	4 cut(s)	54, 78, 291, 299
MspR9I	CCNGG	3 cut(s)	78, 132, 247
MvaI	CCWGG	2 cut(s)	132, 247
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	10
NaeI	GCCGGC	1 cut(s)	292
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	229, 279
NgoMIV	GCCGGC	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	46, 251
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	275
PdiI	GCCGGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	41, 44, 65
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	130, 245
PspGI	CCWGG	2 cut(s)	130, 245
PspN4I	GGNNCC	2 cut(s)	46, 251
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	5 cut(s)	56, 69, 249, 250, 262
RigI	GGCCGGCC	1 cut(s)	294
Rsr2I	CGGWCCG	1 cut(s)	56
RsrII	CGGWCCG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	165
SacII	CCGCGG	1 cut(s)	40
SatI	GCNGC	3 cut(s)	40, 43, 64
Sau3AI	GATC	2 cut(s)	229, 279
Sau96I	GGNCC	5 cut(s)	56, 69, 249, 250, 262
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	3 cut(s)	78, 132, 247
SduI	GDGCHC	2 cut(s)	165, 253
SetI	ASST	6 cut(s)	108, 130, 165, 177, 185, 248
Sfr274I	CTCGAG	1 cut(s)	275
Sfr303I	CCGCGG	1 cut(s)	40
SgrBI	CCGCGG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	56, 69
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	266, 275
SmoI	CTYRAG	2 cut(s)	266, 275
SsiI	CCGC	6 cut(s)	7, 37, 39, 42, 48, 64
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	3 cut(s)	76, 130, 245
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	4 cut(s)	142, 240, 276, 282
TauI	GCSGC	3 cut(s)	42, 45, 66
TfiI	GAWTC	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	56, 69
XhoI	CTCGAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.