Prupe.7G069800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010227
Physical Location & Seq
Reverse (-)
10783238 .. 10783875
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G069800.1

Sequence Viewer

Length: 327 bp
ATGCTCCGCCAGCGCCTCATCCAGACTCTCCGAACTCGCGGCGGTTCAGCCACAGGTCCGAGCCGGTGGACCAGCCCGGGCCACGAGGAGCAACCCAAAGGTTACCTCTTCAACCGGACCCCGCTGTCCCCAGGCCAGACTCGAAAATGGGAGGACTGGGAGCTCCCTTGCTACGTCACCAGCTTCCTCACCATCGTTATCCTTGGCGTCGGCCTCAACGCTAAGCCCGATCTCACCATCGAGACCTGGGCCCACCAGAAAGCCCTCGAACGGCTCGAGATCGAGCAGGCCGGCCTTTCTGTTGCTGGGTCGTCTGAATCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.06

Weight (kDa)

6.73

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AccII CGCG 1 cut(s) 39
AciI CCGC 4 cut(s) 7, 39, 42, 122
AcyI GRCGYC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 2 cut(s) 130, 245
AluBI AGCT 2 cut(s) 163, 183
AluI AGCT 2 cut(s) 163, 183
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 236
Ama87I CYCGRG 2 cut(s) 76, 275
AoxI GGCC 6 cut(s) 79, 133, 211, 249, 288, 292
ApaI GGGCCC 1 cut(s) 253
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 6 cut(s) 56, 69, 79, 117, 249, 250
AsuC2I CCSGG 2 cut(s) 77, 78
AsuHPI GGTGA 3 cut(s) 169, 181, 226
AvaI CYCGRG 2 cut(s) 76, 275
AvaII GGWCC 3 cut(s) 56, 69, 117
BaeGI GKGCMC 1 cut(s) 253
BanII GRGCYC 2 cut(s) 165, 253
BauI CACGAG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 165
BccI CCATC 2 cut(s) 200, 245
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 2 cut(s) 132, 247
BcnI CCSGG 2 cut(s) 77, 78
BcoDI GTCTC 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 16
BisI GCNGC 1 cut(s) 40
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 4 cut(s) 77, 78, 132, 247
Bme18I GGWCC 3 cut(s) 56, 69, 117
BmeT110I CYCGRG 2 cut(s) 76, 275
BmgT120I GGNCC 6 cut(s) 56, 69, 79, 117, 249, 250
BmiI GGNNCC 2 cut(s) 119, 251
BmrFI CCNGG 4 cut(s) 77, 78, 132, 247
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
Bpu1102I GCTNAGC 1 cut(s) 222
BpuMI CCSGG 2 cut(s) 77, 78
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 4 cut(s) 76, 130, 202, 246
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 2 cut(s) 63, 290
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 2 cut(s) 132, 247
BseDI CCNNGG 4 cut(s) 76, 130, 202, 246
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 6 cut(s) 81, 135, 213, 251, 290, 294
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 2 cut(s) 76, 275
BsiSI CCGG 4 cut(s) 64, 77, 115, 291
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 6 cut(s) 81, 135, 213, 251, 290, 294
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 2 cut(s) 76, 275
Bsp120I GGGCCC 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 165, 253
Bsp143I GATC 2 cut(s) 229, 279
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 4 cut(s) 7, 39, 42, 122
BspANI GGCC 6 cut(s) 81, 135, 213, 251, 290, 294
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 119, 251
BspTNI GGTCTC 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 63, 290
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 2 cut(s) 63, 290
BssECI CCNNGG 4 cut(s) 76, 130, 202, 246
BssMI GATC 2 cut(s) 229, 279
BssNI GRCGYC 1 cut(s) 207
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 202
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 132, 247
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 11, 288, 292
BstDEI CTNAG 1 cut(s) 222
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 2 cut(s) 232, 282
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 229, 279
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 132, 247
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 4 cut(s) 75, 76, 130, 245
BstSLI GKGCMC 1 cut(s) 253
BstUI CGCG 1 cut(s) 39
BsuRI GGCC 6 cut(s) 81, 135, 213, 251, 290, 294
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 11, 288, 292
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 2 cut(s) 63, 290
Cfr13I GGNCC 6 cut(s) 56, 69, 79, 117, 249, 250
Cfr9I CCCGGG 1 cut(s) 76
CseI GACGC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 222
DpnI GATC 2 cut(s) 231, 281
DpnII GATC 2 cut(s) 229, 279
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 165, 253
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 3 cut(s) 56, 69, 117
Eco53kI GAGCTC 1 cut(s) 163
Eco88I CYCGRG 2 cut(s) 76, 275
Eco91I GGTNACC 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 130, 245
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 2 cut(s) 165, 253
ErhI CCWWGG 1 cut(s) 202
FaqI GGGAC 1 cut(s) 112
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 2 cut(s) 165, 253
FseI GGCCGGCC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 40
GlaI GCGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 40
GsaI CCCAGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 6 cut(s) 81, 135, 213, 251, 290, 294
HapII CCGG 4 cut(s) 64, 77, 115, 291
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 207
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 3 cut(s) 25, 139, 317
HpaII CCGG 4 cut(s) 64, 77, 115, 291
HphI GGTGA 3 cut(s) 169, 181, 226
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 4 cut(s) 32, 60, 316, 322
Hpy188III TCNNGA 3 cut(s) 22, 241, 277
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 207
HspAI GCGC 1 cut(s) 13
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 229, 279
LmnI GCTCC 4 cut(s) 9, 88, 160, 168
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 101, 175
MalI GATC 2 cut(s) 231, 281
MboI GATC 2 cut(s) 229, 279
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 165, 253
MlyI GAGTC 2 cut(s) 19, 133
MnlI CCTC 7 cut(s) 26, 79, 116, 145, 197, 224, 275
MroNI GCCGGC 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 4 cut(s) 64, 77, 115, 291
MspR9I CCNGG 4 cut(s) 77, 78, 132, 247
MvaI CCWGG 2 cut(s) 132, 247
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 10
NaeI GCCGGC 1 cut(s) 292
NciI CCSGG 2 cut(s) 77, 78
NdeII GATC 2 cut(s) 229, 279
NgoMIV GCCGGC 1 cut(s) 290
NlaIV GGNNCC 2 cut(s) 119, 251
NmuCI GTSAC 1 cut(s) 175
PaeR7I CTCGAG 1 cut(s) 275
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 273
PdiI GCCGGC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 2 cut(s) 19, 133
PpsI GAGTC 2 cut(s) 19, 133
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 130, 245
PspEI GGTNACC 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 130, 245
PspN4I GGNNCC 2 cut(s) 119, 251
PspOMI GGGCCC 1 cut(s) 249
PspPI GGNCC 6 cut(s) 56, 69, 79, 117, 249, 250
RigI GGCCGGCC 1 cut(s) 294
SacI GAGCTC 1 cut(s) 165
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 229, 279
Sau96I GGNCC 6 cut(s) 56, 69, 79, 117, 249, 250
SchI GAGTC 2 cut(s) 19, 133
ScrFI CCNGG 4 cut(s) 77, 78, 132, 247
SduI GDGCHC 2 cut(s) 165, 253
SetI ASST 7 cut(s) 58, 103, 108, 165, 177, 185, 248
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 3 cut(s) 56, 69, 117
SlaI CTCGAG 1 cut(s) 275
SmaI CCCGGG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SrfI GCCCGGGC 1 cut(s) 78
SsiI CCGC 4 cut(s) 7, 39, 42, 122
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 4 cut(s) 75, 76, 130, 245
StyI CCWWGG 1 cut(s) 202
TaiI ACGT 1 cut(s) 177
TaqI TCGA 5 cut(s) 142, 240, 267, 276, 282
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 317
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspMI CCCGGG 1 cut(s) 76
VpaK11BI GGWCC 3 cut(s) 56, 69, 117
XhoI CTCGAG 1 cut(s) 275
XmaI CCCGGG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.