Rh7BG426900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010227
Physical Location & Seq
Forward (+)
48711477 .. 48711782
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG426900.1

Sequence Viewer

Length: 306 bp
ATGCTCCGCCAGCGCCTCATCCAAACCCTCCGAACCCGCGGCTGCTCCGCCACAGGCCCTAGCCGCTGGGCCAGCCCTGACCATGAAGAACAGCCCAAAGGCTACCTCATCCCTCTACCTCCAGGCCAGTCTCGAAAATGGAAGGATTGGGAGCTCCCCTGCTACGTCACAAGCTTCCTCACCATCGTCATCCTCGGCATCGGACTCAATGCCAAGCCCGATCTCACCATCGAGACCTGGGTCCACCAGAAGGCCCTCGAGCTCCTAGAGATCGAGCAGGCCGGCCTTTCGACTGAATCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.44

Weight (kDa)

6.11

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 5 cut(s) 7, 37, 39, 48, 64
AfiI CCNNNNNNNGG 1 cut(s) 250
AjnI CCWGG 2 cut(s) 121, 236
AluBI AGCT 3 cut(s) 154, 174, 262
AluI AGCT 3 cut(s) 154, 174, 262
Alw21I GWGCWC 2 cut(s) 156, 264
Alw26I GTCTC 2 cut(s) 135, 227
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 6 cut(s) 55, 69, 124, 252, 279, 283
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 4 cut(s) 56, 69, 241, 253
AsuHPI GGTGA 2 cut(s) 172, 217
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 2 cut(s) 156, 264
Bbv12I GWGCWC 2 cut(s) 156, 264
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 191, 236
BciT130I CCWGG 2 cut(s) 123, 238
BcoDI GTCTC 2 cut(s) 135, 227
BfaI CTAG 2 cut(s) 60, 266
BfoI RGCGCY 1 cut(s) 16
BisI GCNGC 3 cut(s) 40, 43, 64
BlsI GCNGC 3 cut(s) 41, 44, 65
Bme1390I CCNGG 2 cut(s) 123, 238
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 4 cut(s) 56, 69, 241, 253
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 2 cut(s) 123, 238
BmsI GCATC 1 cut(s) 207
BoxI GACNNNNGTC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 37, 193, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 127
BseBI CCWGG 2 cut(s) 123, 238
BseDI CCNNGG 3 cut(s) 37, 193, 237
BseGI GGATG 3 cut(s) 18, 108, 189
BseLI CCNNNNNNNGG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 6 cut(s) 57, 71, 126, 254, 281, 285
BsiHKAI GWGCWC 2 cut(s) 156, 264
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 2 cut(s) 135, 227
BsnI GGCC 6 cut(s) 57, 71, 126, 254, 281, 285
Bso31I GGTCTC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 156, 264
Bsp143I GATC 2 cut(s) 220, 270
BspACI CCGC 5 cut(s) 7, 37, 39, 48, 64
BspANI GGCC 6 cut(s) 57, 71, 126, 254, 281, 285
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 37, 193, 237
BssMI GATC 2 cut(s) 220, 270
Bst2UI CCWGG 2 cut(s) 123, 238
BstC8I GCNNGC 4 cut(s) 11, 73, 279, 283
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 3 cut(s) 18, 108, 189
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 2 cut(s) 223, 273
BstMAI GTCTC 2 cut(s) 135, 227
BstMBI GATC 2 cut(s) 220, 270
BstMWI GCNNNNNNNGC 3 cut(s) 10, 63, 72
BstNI CCWGG 2 cut(s) 123, 238
BstPAI GACNNNNGTC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 121, 236
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 29
BsuRI GGCC 6 cut(s) 57, 71, 126, 254, 281, 285
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 3 cut(s) 18, 108, 189
Cac8I GCNNGC 4 cut(s) 11, 73, 279, 283
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 4 cut(s) 56, 69, 241, 253
Cfr42I CCGCGG 1 cut(s) 40
CviAII CATG 1 cut(s) 83
DpnI GATC 2 cut(s) 222, 272
DpnII GATC 2 cut(s) 220, 270
EciI GGCGGA 1 cut(s) 37
Ecl136II GAGCTC 2 cut(s) 154, 262
Eco24I GRGCYC 2 cut(s) 156, 264
Eco31I GGTCTC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 2 cut(s) 154, 262
Eco88I CYCGRG 1 cut(s) 257
EcoICRI GAGCTC 2 cut(s) 154, 262
EcoO109I RGGNCCY 2 cut(s) 56, 253
EcoRII CCWGG 2 cut(s) 121, 236
EcoT38I GRGCYC 2 cut(s) 156, 264
FaeI CATG 1 cut(s) 86
FaiI YATR 1 cut(s) 84
FatI CATG 1 cut(s) 82
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 40, 43, 64
FokI GGATG 3 cut(s) 5, 95, 176
FriOI GRGCYC 2 cut(s) 156, 264
FseI GGCCGGCC 1 cut(s) 285
Fsp4HI GCNGC 3 cut(s) 40, 43, 64
FspBI CTAG 2 cut(s) 60, 266
GlaI GCGC 1 cut(s) 14
GluI GCNGC 3 cut(s) 40, 43, 64
GsaI CCCAGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 6 cut(s) 57, 71, 126, 254, 281, 285
HapII CCGG 1 cut(s) 282
HhaI GCGC 1 cut(s) 15
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 2 cut(s) 204, 296
HpaII CCGG 1 cut(s) 282
HphI GGTGA 2 cut(s) 172, 217
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 32, 203, 301
Hpy188III TCNNGA 2 cut(s) 132, 232
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 136, 244
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 63, 72
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 1 cut(s) 13
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 220, 270
LmnI GCTCC 5 cut(s) 9, 50, 151, 159, 267
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 207
MaeI CTAG 2 cut(s) 60, 266
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 222, 272
MboI GATC 2 cut(s) 220, 270
MboII GAAGA 1 cut(s) 98
MhlI GDGCHC 2 cut(s) 156, 264
MlyI GAGTC 1 cut(s) 198
MnlI CCTC 8 cut(s) 26, 38, 116, 123, 129, 188, 203, 266
MroNI GCCGGC 1 cut(s) 281
MspA1I CMGCKG 2 cut(s) 39, 66
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 123, 238
MvaI CCWGG 2 cut(s) 123, 238
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 10, 63, 72
NaeI GCCGGC 1 cut(s) 283
NdeII GATC 2 cut(s) 220, 270
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 242
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 166
PaeR7I CTCGAG 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 3 cut(s) 41, 44, 65
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PshAI GACNNNNGTC 1 cut(s) 239
Psp124BI GAGCTC 2 cut(s) 156, 264
Psp6I CCWGG 2 cut(s) 121, 236
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 2 cut(s) 121, 236
PspN4I GGNNCC 1 cut(s) 242
PspPI GGNCC 4 cut(s) 56, 69, 241, 253
PspXI VCTCGAGB 1 cut(s) 257
RigI GGCCGGCC 1 cut(s) 285
SacI GAGCTC 2 cut(s) 156, 264
SacII CCGCGG 1 cut(s) 40
SatI GCNGC 3 cut(s) 40, 43, 64
Sau3AI GATC 2 cut(s) 220, 270
Sau96I GGNCC 4 cut(s) 56, 69, 241, 253
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 2 cut(s) 123, 238
SduI GDGCHC 2 cut(s) 156, 264
SetI ASST 7 cut(s) 108, 121, 156, 168, 176, 239, 264
SfaNI GCATC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 257
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SinI GGWCC 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SsiI CCGC 5 cut(s) 7, 37, 39, 48, 64
SspMI CTAG 2 cut(s) 60, 266
SstI GAGCTC 2 cut(s) 156, 264
StyD4I CCNGG 2 cut(s) 121, 236
TaiI ACGT 1 cut(s) 168
TaqI TCGA 5 cut(s) 133, 231, 258, 273, 290
TauI GCSGC 2 cut(s) 42, 66
TfiI GAWTC 1 cut(s) 296
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 257
XspI CTAG 2 cut(s) 60, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.