AT3G57785

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010227
Physical Location & Seq
Reverse (-)
21404574 .. 21405217
644 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57785.1

Sequence Viewer

Length: 345 bp
ATGGCGTCGACGAAGCCATTGATTGTCGCAGCGAAGACGCTCCGAAACCGGATCCACTTCCGATCTGGATCCACATCTACTGGTCCAAGCCGGTGGGCGACACCGGGTCACGAAGAACGACCCAAAGGATATTTCATGAACCGGACTCCGCCGCCTCCAGGACAGTCGCGCAAGTGGGAAGATTGGGAGCTTCCATGTTACATCACAAGCTTCCTCACGATTGTAATCCTCGGAGTGGGTCTCAATGCCAAACCTGATCTTTCAATCGAGACCTGGGCTCACCAGAAAGCTCTTGAGCGCCTCGAGATGGAGAAGCTTGCATCTGCCGGAGATTCATCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

9.51

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 169
AciI CCGC 2 cut(s) 149, 152
AclWI GGATC 4 cut(s) 46, 59, 63, 76
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 158, 235, 307
AgsI TTSAA 1 cut(s) 264
AhdI GACNNNNNGTC 1 cut(s) 105
AjnI CCWGG 2 cut(s) 157, 272
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 4 cut(s) 190, 210, 290, 316
AluI AGCT 4 cut(s) 190, 210, 290, 316
Alw26I GTCTC 2 cut(s) 245, 263
AlwI GGATC 4 cut(s) 46, 59, 63, 76
Ama87I CYCGRG 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 29
AspLEI GCGC 2 cut(s) 171, 300
AspS9I GGNCC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 83
BamHI GGATCC 2 cut(s) 51, 68
BanII GRGCYC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 2 cut(s) 159, 274
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 245, 263
BfoI RGCGCY 1 cut(s) 301
BisI GCNGC 2 cut(s) 30, 152
BlsI GCNGC 2 cut(s) 31, 153
Bme1390I CCNGG 3 cut(s) 105, 159, 274
Bme18I GGWCC 1 cut(s) 83
BmeRI GACNNNNNGTC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 2 cut(s) 53, 70
BmrFI CCNGG 3 cut(s) 105, 159, 274
BmsI GCATC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 225, 257
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 105
BsaBI GATNNNNATC 3 cut(s) 67, 73, 224
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 245, 263
BsaJI CCNNGG 2 cut(s) 229, 273
BsaWI WCCGGW 2 cut(s) 48, 141
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 235, 307
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 85
Bse8I GATNNNNATC 3 cut(s) 67, 73, 224
BseBI CCWGG 2 cut(s) 159, 274
BseDI CCNNGG 2 cut(s) 229, 273
BseJI GATNNNNATC 3 cut(s) 67, 73, 224
BseLI CCNNNNNNNGG 3 cut(s) 158, 235, 307
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 5 cut(s) 49, 91, 104, 142, 327
BslI CCNNNNNNNGG 3 cut(s) 158, 235, 307
BsmAI GTCTC 2 cut(s) 245, 263
Bso31I GGTCTC 2 cut(s) 245, 263
BsoBI CYCGRG 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 4 cut(s) 51, 62, 68, 256
BspACI CCGC 2 cut(s) 149, 152
BspFNI CGCG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 53, 70
BspPI GGATC 4 cut(s) 46, 59, 63, 76
BspTNI GGTCTC 2 cut(s) 245, 263
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 229, 273
BssMI GATC 4 cut(s) 51, 62, 68, 256
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 159, 274
Bst4CI ACNGT 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 318
BstFNI CGCG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 2 cut(s) 171, 300
BstKTI GATC 4 cut(s) 54, 65, 71, 259
BstMAI GTCTC 2 cut(s) 245, 263
BstMBI GATC 4 cut(s) 51, 62, 68, 256
BstNI CCWGG 2 cut(s) 159, 274
BstSCI CCNGG 3 cut(s) 103, 157, 272
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 51, 68
BstXI CCANNNNNNTGG 1 cut(s) 93
BstYI RGATCY 2 cut(s) 51, 68
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 135
CfoI GCGC 2 cut(s) 171, 300
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 83
CseI GACGC 1 cut(s) 46
CviAII CATG 2 cut(s) 136, 195
CviJI RGCY 7 cut(s) 16, 90, 190, 210, 278, 290, 316
CviKI_1 RGCY 7 cut(s) 16, 90, 190, 210, 278, 290, 316
DpnI GATC 4 cut(s) 53, 64, 70, 258
DpnII GATC 4 cut(s) 51, 62, 68, 256
DriI GACNNNNNGTC 1 cut(s) 105
Eam1105I GACNNNNNGTC 1 cut(s) 105
EciI GGCGGA 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 280
Eco31I GGTCTC 2 cut(s) 245, 263
Eco47I GGWCC 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 157, 272
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 2 cut(s) 139, 198
FaiI YATR 2 cut(s) 137, 196
FatI CATG 2 cut(s) 135, 194
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 30, 152
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 2 cut(s) 30, 152
GlaI GCGC 2 cut(s) 170, 299
GluI GCNGC 2 cut(s) 30, 152
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 301
HapII CCGG 5 cut(s) 49, 91, 104, 142, 327
HgaI GACGC 1 cut(s) 46
HhaI GCGC 2 cut(s) 171, 300
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 139, 198
Hin6I GCGC 2 cut(s) 169, 298
HinP1I GCGC 2 cut(s) 169, 298
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 2 cut(s) 208, 314
HinfI GANTC 2 cut(s) 145, 332
HpaII CCGG 5 cut(s) 49, 91, 104, 142, 327
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 44, 62, 233
Hpy188III TCNNGA 7 cut(s) 66, 110, 136, 217, 268, 293, 304
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 2 cut(s) 10, 13
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 139, 198
HspAI GCGC 2 cut(s) 169, 298
Kzo9I GATC 4 cut(s) 51, 62, 68, 256
LmnI GCTCC 2 cut(s) 45, 187
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 107, 197
MalI GATC 4 cut(s) 53, 64, 70, 258
MboI GATC 4 cut(s) 51, 62, 68, 256
MboII GAAGA 3 cut(s) 46, 125, 191
MflI RGATCY 2 cut(s) 51, 68
MhlI GDGCHC 1 cut(s) 280
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 4 cut(s) 165, 224, 239, 311
MseI TTAA 1 cut(s) 343
MspI CCGG 5 cut(s) 49, 91, 104, 142, 327
MspR9I CCNGG 3 cut(s) 105, 159, 274
MvaI CCWGG 2 cut(s) 159, 274
MvnI CGCG 1 cut(s) 169
NciI CCSGG 1 cut(s) 105
NdeII GATC 4 cut(s) 51, 62, 68, 256
NlaIII CATG 2 cut(s) 139, 198
NlaIV GGNNCC 2 cut(s) 53, 70
NmuCI GTSAC 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 302
PagI TCATGA 1 cut(s) 135
PfeI GAWTC 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 2 cut(s) 31, 153
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 157, 272
PspGI CCWGG 2 cut(s) 157, 272
PspN4I GGNNCC 2 cut(s) 53, 70
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 2 cut(s) 51, 68
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 343
SatI GCNGC 2 cut(s) 30, 152
Sau3AI GATC 4 cut(s) 51, 62, 68, 256
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 105, 159, 274
SduI GDGCHC 1 cut(s) 280
SetI ASST 6 cut(s) 192, 212, 256, 275, 292, 318
SfaNI GCATC 1 cut(s) 329
Sfr274I CTCGAG 1 cut(s) 302
SgrDI CGTCGACG 1 cut(s) 7
SinI GGWCC 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 302
SmlI CTYRAG 2 cut(s) 293, 302
SmoI CTYRAG 2 cut(s) 293, 302
SsiI CCGC 2 cut(s) 149, 152
StyD4I CCNGG 3 cut(s) 103, 157, 272
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 3 cut(s) 8, 267, 303
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 3 cut(s) 124, 152, 324
VpaK11BI GGWCC 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XhoI CTCGAG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.