AT2G42390

Glucosidase II beta subunit-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008797
Physical Location & Seq
Reverse (-)
17651106 .. 17652643
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42390.1

Sequence Viewer

Length: 639 bp
ATGCTGCTGCAATGCGTCGTGTTGTGTTCGTCACTCGCCGTCGTCGTCATCTCCGTCGCTTCGACCTCTCCCCTCGTTGGTGTTCACCCTTTAGATGAAAAGTATTTCGACTCAGATGTTATCAAATGCAAAGATGGCTCCAAATCTTTCACAAGAGATCGTCTCAACGACAACTTCTGCGATTGTCTCGACGGCACCGATGAGCCTGGAACTTCGGCATGTCCAAATGGCAAATTTTACTGTAGGAACATTGGAAGTTCTCCAAAGTTCGTTTACTCTTCTCGTGTGAATGATCGAATCTGTGATTGCTGCGATGGAAGCGACGAGTACGAAAGTAGCATTCATTGTCCCAACACTTGTATAATGGGTGGTAACGTTAACTACATCTACAAACCTAGAGCCAACCTTAAATCTATACACTTGCAACTCGGTTCAACGCCTCATCCAAAGGAGTTTTATACTATAGGAAATCTTCAGGACATGGTCAAGAATCTACAAGGTATGAAGCTTGTTTTCGCTCTTCAGATGGTTTTTATCGGTTTCTTAGTGATCTTATGGATGCTTAGGAGTCGTGCTCGGTCTAAGAGACGACGCTATCTGCTGAAGAATGTACCTCCCATTAATAGATCAGCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
PRKCSH-like

Protein Analysis

212

Amino Acids

23.75

Weight (kDa)

8.81

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRKCSH-like PF12999 9 - 121 8.3e-31 Glucosidase II beta subunit-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AclI AACGTT 1 cut(s) 375
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 3 cut(s) 458, 506, 623
AfaI GTAC 2 cut(s) 329, 612
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 435
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 508, 632
AluI AGCT 2 cut(s) 508, 632
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 3 cut(s) 167, 191, 580
ApeKI GCWGC 3 cut(s) 4, 7, 309
ApoI RAATTY 1 cut(s) 233
AseI ATTAAT 1 cut(s) 621
AsuHPI GGTGA 1 cut(s) 77
BanI GGYRCC 1 cut(s) 194
BauI CACGAG 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 1 cut(s) 296
BccI CCATC 3 cut(s) 128, 308, 520
BceAI ACGGC 2 cut(s) 23, 208
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 3 cut(s) 167, 191, 580
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 2 cut(s) 241, 462
BisI GCNGC 3 cut(s) 5, 8, 310
BlsI GCNGC 3 cut(s) 6, 9, 311
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 139, 196
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 549
BplI GAGNNNNNCTC 4 cut(s) 147, 179, 559, 591
Bpu10I CCTNAGC 1 cut(s) 563
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 442, 564
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 577
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 3 cut(s) 167, 191, 580
BsmBI CGTCTC 2 cut(s) 167, 580
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 4 cut(s) 157, 292, 549, 626
BspCNI CTCAG 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 139, 196
BspQI GCTCTTC 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 17
BssMI GATC 4 cut(s) 157, 292, 549, 626
BssSI CACGAG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 2 cut(s) 283, 525
BstDEI CTNAG 4 cut(s) 112, 544, 563, 582
BstF5I GGATG 2 cut(s) 442, 564
BstKTI GATC 4 cut(s) 160, 295, 552, 629
BstMAI GTCTC 3 cut(s) 167, 191, 580
BstMBI GATC 4 cut(s) 157, 292, 549, 626
BstMWI GCNNNNNNNGC 2 cut(s) 135, 318
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 2 cut(s) 241, 462
BstV1I GCAGC 1 cut(s) 296
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 2 cut(s) 442, 564
CseI GACGC 2 cut(s) 4, 600
Csp6I GTAC 2 cut(s) 328, 611
CviAII CATG 2 cut(s) 219, 481
CviJI RGCY 5 cut(s) 138, 205, 401, 508, 632
CviKI_1 RGCY 5 cut(s) 138, 205, 401, 508, 632
CviQI GTAC 2 cut(s) 328, 611
DdeI CTNAG 4 cut(s) 112, 544, 563, 582
DpnI GATC 4 cut(s) 159, 294, 551, 628
DpnII GATC 4 cut(s) 157, 292, 549, 626
Eam1104I CTCTTC 2 cut(s) 283, 525
EarI CTCTTC 2 cut(s) 283, 525
Eco57I CTGAAG 3 cut(s) 458, 506, 623
EcoRII CCWGG 1 cut(s) 205
Esp3I CGTCTC 2 cut(s) 167, 580
FaeI CATG 2 cut(s) 222, 484
FaiI YATR 8 cut(s) 220, 362, 416, 459, 464, 482, 503, 556
FaqI GGGAC 1 cut(s) 333
FatI CATG 2 cut(s) 218, 480
Fnu4HI GCNGC 3 cut(s) 5, 8, 310
FokI GGATG 2 cut(s) 429, 571
Fsp4HI GCNGC 3 cut(s) 5, 8, 310
FspBI CTAG 1 cut(s) 396
GluI GCNGC 3 cut(s) 5, 8, 310
HgaI GACGC 2 cut(s) 4, 600
Hin1II CATG 2 cut(s) 222, 484
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 4 cut(s) 110, 297, 490, 568
HpaI GTTAAC 1 cut(s) 379
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 3 cut(s) 85, 274, 379
Hpy188I TCNGA 2 cut(s) 115, 525
Hpy188III TCNNGA 3 cut(s) 188, 476, 487
Hpy8I GTNNAC 3 cut(s) 85, 274, 379
Hpy99I CGWCG 7 cut(s) 20, 44, 47, 59, 194, 326, 594
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 10, 129, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 318
HpyF3I CTNAG 4 cut(s) 112, 544, 563, 582
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 2 cut(s) 222, 484
KspAI GTTAAC 1 cut(s) 379
Kzo9I GATC 4 cut(s) 157, 292, 549, 626
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 3 cut(s) 192, 219, 461
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 549
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 30, 371
MalI GATC 4 cut(s) 159, 294, 551, 628
MboI GATC 4 cut(s) 157, 292, 549, 626
MboII GAAGA 4 cut(s) 270, 464, 512, 616
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 1 cut(s) 233
MlyI GAGTC 2 cut(s) 104, 577
MnlI CCTC 4 cut(s) 76, 83, 450, 624
MseI TTAA 3 cut(s) 378, 408, 621
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 339
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 135, 318
NdeII GATC 4 cut(s) 157, 292, 549, 626
NlaIII CATG 2 cut(s) 222, 484
NlaIV GGNNCC 2 cut(s) 139, 196
NmuCI GTSAC 1 cut(s) 30
NspI RCATGY 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 525
PcsI WCGNNNNNNNCGW 3 cut(s) 42, 51, 195
PctI GAATGC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 297, 490
PflFI GACNNNGTC 1 cut(s) 482
PkrI GCNGC 3 cut(s) 6, 9, 311
PleI GAGTC 2 cut(s) 104, 576
PpsI GAGTC 2 cut(s) 104, 576
PshBI ATTAAT 1 cut(s) 621
Psp1406I AACGTT 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 139, 196
PsyI GACNNNGTC 1 cut(s) 482
RsaI GTAC 2 cut(s) 329, 612
RsaNI GTAC 2 cut(s) 328, 611
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 3 cut(s) 378, 408, 621
SatI GCNGC 3 cut(s) 5, 8, 310
Sau3AI GATC 4 cut(s) 157, 292, 549, 626
SchI GAGTC 2 cut(s) 104, 577
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 577
SetI ASST 8 cut(s) 68, 378, 397, 408, 502, 510, 616, 634
SfaNI GCATC 1 cut(s) 549
SfcI CTRYAG 2 cut(s) 241, 462
Sse9I AATT 1 cut(s) 233
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 1 cut(s) 378
TaqI TCGA 4 cut(s) 62, 108, 189, 295
TaqII GACCGA 1 cut(s) 567
TasI AATT 1 cut(s) 233
TfiI GAWTC 2 cut(s) 297, 490
Tru1I TTAA 3 cut(s) 378, 408, 621
Tru9I TTAA 3 cut(s) 378, 408, 621
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 3 cut(s) 4, 7, 309
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 111, 332, 518
TspGWI ACGGA 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 482
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 222
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.