Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005514.1

Orthogroup ID

OG0008797

Physical Location & Seq

Genomic Coordinates Forward (+)

90008 .. 93926

Gene Structure 3919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005514.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atggagacgagtttcatatggtcagtctccgcctgtttctttctggtctcgtccttctcctttgttcgctcattctccaatccatctcttcttggagttcatccactcgatgaaaagtactttgctccggaggtgatcaagtgcaaggacgattccaagtcgttcaccagagaccgtctcaatgataatttctgtgactgtgttgatgggactgacgagcctgggacttctgcttgtcctgcaggcaaattttattgtcgtaatattggaagtacaccacagttcatattttcttctcgagttaatgatcgtatttgtgattgctgcgatggaagtgatgagaatgatggtagtctcaattgtccaaatacatgcatcatgggtgggaatgttgagtacaaaactgaccaccgcttctctagagttcaggatcgagggtatgttgacaaaaagcaaaccgaaaatagagtcagtctggatgacttcgttcagaagcttaaaggtttgaagataataataatcgtacaattagtgattgctagtgtttttgtggtttgccggatattccatcgtcatgccagatcaaaacgaagacgctatcaaaatggtatttgcagtattttttctggtcctataccaatatttggccgacgtgcttcctcaggatctgtgtatgggtttcaagaaaacgaagtgctggaggatttattgaatcgaattcctccgataactattccgatttcgactcctgtgagcagaacgatgaagattcggagtgtgattgatgtgagtgaggagtacgagagtattgtcaagagctttgttgtgggtatgggatcggcgggcggagttacggaggttgtggcgatgcacaagaaattgatttatggactgatcgcgctgtacttgaatattaatagcctgaaaaatgaaggagaacaacgacaccggcggcgacggcgggtatgtgaggacggaccaaatagatctgaagagcttggacgagcagcttcagaagcatctgagcagggcatggactatggagaagaacaagaacagagaccagcaggaacaacaaatctgaatattaggttgttcaaagaaatagtcataccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH-like

Protein Analysis

372

Amino Acids

41.83

Weight (kDa)

7.88

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42390
fragaria_vesca	FvH4_6g26960 FvH4_6g26960 FvH4_6g26960 FvH4_6g26960
malus_domestica	MD02G1242400.v1.1
prunus_persica	Prupe.3G125900_v2.0.a1 Prupe.3G125900_v2.0.a1 Prupe.3G125900_v2.0.a1 Prupe.3G125900_v2.0.a1
pyrus_communis	pycom02g20910
rosa_chinensis	RchiOBHm_Chr2g0128801
rosa_laevigata	RLG00000019025
rosa_multiflora	Rmu_sc0005514.1_g000021
rosa_roxburghii	Rroxscaffold_2G00115260
rosa_rugosa	Rorug02G0280800 Rorug02G0280900 Rorug02G0281000
rosa_samantha	Rh2AG333900 Rh2BG341800 Rh2CG320700 Rh2DG358500
rosa_wichuraiana	Rw2G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccII	CGCG	1 cut(s)	899
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	6 cut(s)	30, 412, 842, 846, 952, 961
AclWI	GGATC	3 cut(s)	438, 673, 844
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	2 cut(s)	248, 717
AcuI	CTGAAG	2 cut(s)	996, 1011
AfaI	GTAC	6 cut(s)	119, 274, 398, 525, 800, 905
AfiI	CCNNNNNNNGG	1 cut(s)	644
AgsI	TTSAA	5 cut(s)	508, 683, 712, 910, 1099
AjiI	CACGTC	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	4 cut(s)	496, 819, 997, 1010
AluI	AGCT	4 cut(s)	496, 819, 997, 1010
Alw26I	GTCTC	6 cut(s)	31, 52, 165, 182, 359, 1054
AlwI	GGATC	3 cut(s)	438, 673, 844
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	297
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	1 cut(s)	646
ApeKI	GCWGC	2 cut(s)	324, 1007
ApoI	RAATTY	2 cut(s)	248, 717
ArsI	GACNNNNNNTTYG	3 cut(s)	453, 485, 1092
AseI	ATTAAT	1 cut(s)	915
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	2 cut(s)	629, 977
AsuHPI	GGTGA	2 cut(s)	145, 157
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	629, 977
AxyI	CCTNAGG	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	311, 1019
BccI	CCATC	5 cut(s)	91, 200, 323, 341, 576
BceAI	ACGGC	1 cut(s)	974
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	6 cut(s)	31, 52, 165, 182, 359, 1054
BfaI	CTAG	2 cut(s)	420, 540
BfmI	CTRYAG	1 cut(s)	240
BglII	AGATCT	1 cut(s)	986
BisI	GCNGC	3 cut(s)	325, 953, 1008
BlsI	GCNGC	3 cut(s)	326, 954, 1009
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	2 cut(s)	629, 977
BmeT110I	CYCGRG	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	653
BmgT120I	GGNCC	2 cut(s)	629, 977
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	384, 858, 1028
BpiI	GAAGAC	1 cut(s)	598
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BpmI	CTGGAG	1 cut(s)	719
BsaI	GGTCTC	3 cut(s)	52, 165, 1054
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse118I	RCCGGY	1 cut(s)	948
Bse21I	CCTNAGG	1 cut(s)	661
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	100, 484
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMII	CTCAG	2 cut(s)	675, 1014
BseRI	GAGGAG	1 cut(s)	809
BseXI	GCAGC	2 cut(s)	311, 1019
Bsh1236I	CGCG	1 cut(s)	899
BshFI	GGCC	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	128, 559, 949
BslFI	GGGAC	2 cut(s)	223, 238
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	6 cut(s)	31, 52, 165, 182, 359, 1054
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	223, 238
BsnI	GGCC	1 cut(s)	648
Bso31I	GGTCTC	3 cut(s)	52, 165, 1054
BsoBI	CYCGRG	1 cut(s)	297
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	8 cut(s)	135, 307, 430, 581, 665, 836, 894, 986
BspACI	CCGC	6 cut(s)	30, 412, 842, 846, 952, 961
BspANI	GGCC	1 cut(s)	648
BspCNI	CTCAG	2 cut(s)	674, 1015
BspEI	TCCGGA	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	899
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	3 cut(s)	438, 673, 844
BspQI	GCTCTTC	1 cut(s)	987
BspTNI	GGTCTC	3 cut(s)	52, 165, 1054
BsrFI	RCCGGY	1 cut(s)	948
BssAI	RCCGGY	1 cut(s)	948
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	8 cut(s)	135, 307, 430, 581, 665, 836, 894, 986
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	176, 200, 282
Bst6I	CTCTTC	2 cut(s)	93, 987
BstC8I	GCNNGC	2 cut(s)	244, 844
BstDEI	CTNAG	2 cut(s)	661, 1023
BstF5I	GGATG	2 cut(s)	100, 484
BstFNI	CGCG	1 cut(s)	899
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	8 cut(s)	138, 310, 433, 584, 668, 839, 897, 989
BstMAI	GTCTC	6 cut(s)	31, 52, 165, 182, 359, 1054
BstMBI	GATC	8 cut(s)	135, 307, 430, 581, 665, 836, 894, 986
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 958, 1016
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	899
BstV1I	GCAGC	2 cut(s)	311, 1019
BstV2I	GAAGAC	1 cut(s)	598
BstX2I	RGATCY	2 cut(s)	665, 986
BstYI	RGATCY	2 cut(s)	665, 986
Bsu36I	CCTNAGG	1 cut(s)	661
BsuRI	GGCC	1 cut(s)	648
BtgZI	GCGATG	2 cut(s)	342, 881
BtrI	CACGTC	1 cut(s)	653
BtsCI	GGATG	2 cut(s)	100, 484
Cac8I	GCNNGC	2 cut(s)	244, 844
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	1 cut(s)	901
Cfr10I	RCCGGY	1 cut(s)	948
Cfr13I	GGNCC	2 cut(s)	629, 977
CseI	GACGC	1 cut(s)	603
Csp6I	GTAC	6 cut(s)	118, 273, 397, 524, 799, 904
CviAII	CATG	5 cut(s)	372, 379, 575, 1033, 1116
CviJI	RGCY	7 cut(s)	220, 496, 648, 819, 921, 997, 1010
CviKI_1	RGCY	7 cut(s)	220, 496, 648, 819, 921, 997, 1010
CviQI	GTAC	6 cut(s)	118, 273, 397, 524, 799, 904
DdeI	CTNAG	2 cut(s)	661, 1023
DpnI	GATC	8 cut(s)	137, 309, 432, 583, 667, 838, 896, 988
DpnII	GATC	8 cut(s)	135, 307, 430, 581, 665, 836, 894, 986
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	2 cut(s)	93, 987
EarI	CTCTTC	2 cut(s)	93, 987
EciI	GGCGGA	2 cut(s)	19, 861
Eco31I	GGTCTC	3 cut(s)	52, 165, 1054
Eco47I	GGWCC	2 cut(s)	629, 977
Eco57I	CTGAAG	2 cut(s)	996, 1011
Eco81I	CCTNAGG	1 cut(s)	661
Eco88I	CYCGRG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	717
EcoRII	CCWGG	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	5 cut(s)	375, 382, 578, 1036, 1119
FaqI	GGGAC	2 cut(s)	223, 238
FatI	CATG	5 cut(s)	371, 378, 574, 1032, 1115
FauI	CCCGC	2 cut(s)	835, 954
FauNDI	CATATG	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	325, 953, 1008
FokI	GGATG	2 cut(s)	87, 491
Fsp4HI	GCNGC	3 cut(s)	325, 953, 1008
FspBI	CTAG	2 cut(s)	420, 540
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	3 cut(s)	325, 953, 1008
GsuI	CTGGAG	1 cut(s)	719
HaeIII	GGCC	1 cut(s)	648
HapII	CCGG	3 cut(s)	128, 559, 949
HgaI	GACGC	1 cut(s)	603
HhaI	GCGC	1 cut(s)	901
Hin1II	CATG	5 cut(s)	375, 382, 578, 1036, 1119
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	5 cut(s)	152, 468, 712, 745, 769
HpaII	CCGG	3 cut(s)	128, 559, 949
HphI	GGTGA	2 cut(s)	145, 157
Hpy166II	GTNNAC	3 cut(s)	165, 275, 445
Hpy188I	TCNGA	8 cut(s)	492, 726, 738, 774, 991, 1015, 1024, 1083
Hpy188III	TCNNGA	8 cut(s)	128, 297, 420, 428, 476, 663, 683, 814
Hpy8I	GTNNAC	3 cut(s)	165, 275, 445
Hpy99I	CGWCG	2 cut(s)	654, 960
HpyAV	CCTTC	2 cut(s)	64, 926
HpyCH4III	ACNGT	3 cut(s)	176, 200, 282
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	5 cut(s)	144, 242, 375, 615, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 958, 1016
HpyF3I	CTNAG	2 cut(s)	661, 1023
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	5 cut(s)	375, 382, 578, 1036, 1119
HspAI	GCGC	1 cut(s)	899
Kpn2I	TCCGGA	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	8 cut(s)	135, 307, 430, 581, 665, 836, 894, 986
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	311, 1019
LweI	GCATC	3 cut(s)	384, 858, 1028
MaeI	CTAG	2 cut(s)	420, 540
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	2 cut(s)	194, 850
MalI	GATC	8 cut(s)	137, 309, 432, 583, 667, 838, 896, 988
MboI	GATC	8 cut(s)	135, 307, 430, 581, 665, 836, 894, 986
MboII	GAAGA	7 cut(s)	80, 285, 520, 603, 778, 1004, 1058
MfeI	CAATTG	1 cut(s)	358
MflI	RGATCY	2 cut(s)	665, 986
MluCI	AATT	6 cut(s)	187, 248, 358, 527, 717, 878
MlyI	GAGTC	2 cut(s)	477, 739
MnlI	CCTC	8 cut(s)	124, 428, 670, 694, 732, 787, 850, 964
Mph1103I	ATGCAT	1 cut(s)	377
MroI	TCCGGA	1 cut(s)	127
MseI	TTAA	3 cut(s)	303, 498, 915
MslI	CAYNNNNRTG	1 cut(s)	573
MspI	CCGG	3 cut(s)	128, 559, 949
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	899
MwoI	GCNNNNNNNGC	3 cut(s)	239, 958, 1016
NdeI	CATATG	1 cut(s)	17
NdeII	GATC	8 cut(s)	135, 307, 430, 581, 665, 836, 894, 986
NlaIII	CATG	5 cut(s)	375, 382, 578, 1036, 1119
NmuCI	GTSAC	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	377
NspI	RCATGY	1 cut(s)	375
PaeR7I	CTCGAG	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	987
PfeI	GAWTC	3 cut(s)	152, 712, 769
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	3 cut(s)	326, 954, 1009
PleI	GAGTC	2 cut(s)	476, 739
PpsI	GAGTC	2 cut(s)	476, 739
PshBI	ATTAAT	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	629, 977
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	2 cut(s)	665, 986
RsaI	GTAC	6 cut(s)	119, 274, 398, 525, 800, 905
RsaNI	GTAC	6 cut(s)	118, 273, 397, 524, 799, 904
RseI	CAYNNNNRTG	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	987
SaqAI	TTAA	3 cut(s)	303, 498, 915
SatI	GCNGC	3 cut(s)	325, 953, 1008
Sau3AI	GATC	8 cut(s)	135, 307, 430, 581, 665, 836, 894, 986
Sau96I	GGNCC	2 cut(s)	629, 977
SbfI	CCTGCAGG	1 cut(s)	244
ScaI	AGTACT	1 cut(s)	119
SchI	GAGTC	2 cut(s)	477, 739
ScrFI	CCNGG	1 cut(s)	222
SdaI	CCTGCAGG	1 cut(s)	244
SetI	ASST	9 cut(s)	135, 498, 505, 655, 821, 861, 999, 1012, 1094
SfaNI	GCATC	3 cut(s)	384, 858, 1028
SfcI	CTRYAG	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	297
SgrAI	CRCCGGYG	1 cut(s)	948
SinI	GGWCC	2 cut(s)	629, 977
SlaI	CTCGAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse8387I	CCTGCAGG	1 cut(s)	244
Sse9I	AATT	6 cut(s)	187, 248, 358, 527, 717, 878
SsiI	CCGC	6 cut(s)	30, 412, 842, 846, 952, 961
SspI	AATATT	4 cut(s)	265, 642, 913, 1087
SspMI	CTAG	2 cut(s)	420, 540
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	176, 200, 282
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	5 cut(s)	108, 298, 433, 715, 743
TasI	AATT	6 cut(s)	187, 248, 358, 527, 717, 878
TatI	WGTACW	4 cut(s)	117, 272, 396, 903
TauI	GCSGC	1 cut(s)	955
TfiI	GAWTC	3 cut(s)	152, 712, 769
Tru1I	TTAA	3 cut(s)	303, 498, 915
Tru9I	TTAA	3 cut(s)	303, 498, 915
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	324, 1007
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	6 cut(s)	4, 89, 126, 274, 779, 945
TspGWI	ACGGA	2 cut(s)	869, 990
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	629, 977
VspI	ATTAAT	1 cut(s)	915
XapI	RAATTY	2 cut(s)	248, 717
XbaI	TCTAGA	1 cut(s)	419
XceI	RCATGY	1 cut(s)	375
XhoI	CTCGAG	1 cut(s)	297
XspI	CTAG	2 cut(s)	420, 540
ZrmI	AGTACT	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.