Prupe.3G125900_v2.0.a1

Glucosidase 2 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0008797
Physical Location & Seq
Reverse (-)
11595145 .. 11597872
2728 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G125900.2

Sequence Viewer

Length: 696 bp
ATGGATGCGAGTTTTATACTCATCACCTGTTTTCTTCTGGCCTCGTCCTTCACCATTGTTCACTCTCTCTCCAAACCACCTCTTCTTGGAGTTCACCCACTCGATGAGCAGTACTTTGCTTCAGAAGTGATCAAGTGCAAGGACAACTCCAAGTCCTTCACCAGAGATCGCCTCAATGACAATTTCTGTGATTGTGTTGACGGAACCGACGAGCCTGGAACTTCCGCTTGTCCTGCAGGCAAATTTTATTGTAGAAATATAGGAAGTACACCACAATTCCTATTTTCATCTCGAGTTAACGATCATTTTTGTGATTGCTGTGATGGAAGCGACGAGTATGATGGTAGTGTCAATTGTCCAAACACATGCATAATGGGCGGGAATATTGAGTACAAAACTGACCATCGCTTCTCAAGAGTTGGGGGTCTAGTTGGGGATCTAGGGCATGTCGGTGCAAAACAAGCCAAAAATGGAGTTAGTTTGGATGACTTGATTCAGAAGCTAAAAGGTTTGAAGATATTAATAATCATACAAGTAGTTATTACTATTGTTGTCGTGGTTTTCCGGATACTCCGTCGTCGTGCCAGATCTAAAAGAAGGCGTCACCACAAAGTAATTCAACATTTGTTATTCTGCTTTTGGTTTTATACCAGCATGATGGCTGATTTTCTAATGGGTTCCTCCAAGTATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
PRKCSH-like

Protein Analysis

232

Amino Acids

25.92

Weight (kDa)

8.58

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 564
AciI CCGC 2 cut(s) 225, 378
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 601
AfaI GTAC 3 cut(s) 113, 268, 392
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 514, 620
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 502
AluI AGCT 1 cut(s) 502
AlwI GGATC 1 cut(s) 444
Ama87I CYCGRG 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 564
AoxI GGCC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 242
AseI ATTAAT 1 cut(s) 521
AsuHPI GGTGA 5 cut(s) 16, 43, 86, 151, 596
AvaI CYCGRG 1 cut(s) 291
BccI CCATC 4 cut(s) 317, 335, 411, 652
BciT130I CCWGG 1 cut(s) 216
BciVI GTATCC 1 cut(s) 561
BclI TGATCA 1 cut(s) 129
BfaI CTAG 2 cut(s) 428, 440
BfmI CTRYAG 1 cut(s) 234
BfuI GTATCC 1 cut(s) 561
BglII AGATCT 1 cut(s) 587
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 1 cut(s) 216
BmeT110I CYCGRG 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 205, 679
BmrFI CCNGG 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 156, 188
BpuEI CTTGAG 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 601
BsaWI WCCGGW 1 cut(s) 564
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 86
BseAI TCCGGA 1 cut(s) 564
BseBI CCWGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 10, 490
BseLI CCNNNNNNNGG 1 cut(s) 86
BshFI GGCC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 1 cut(s) 565
BslI CCNNNNNNNGG 1 cut(s) 86
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 291
Bsp13I TCCGGA 1 cut(s) 564
Bsp143I GATC 5 cut(s) 129, 166, 301, 436, 587
BspACI CCGC 2 cut(s) 225, 378
BspANI GGCC 1 cut(s) 41
BspEI TCCGGA 1 cut(s) 564
BspLI GGNNCC 2 cut(s) 205, 679
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 444
BssMI GATC 5 cut(s) 129, 166, 301, 436, 587
BssNI GRCGYC 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 216
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 601
BstC8I GCNNGC 1 cut(s) 238
BstF5I GGATG 2 cut(s) 10, 490
BstKTI GATC 5 cut(s) 132, 169, 304, 439, 590
BstMBI GATC 5 cut(s) 129, 166, 301, 436, 587
BstMWI GCNNNNNNNGC 3 cut(s) 233, 375, 461
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 2 cut(s) 369, 449
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 234
BstX2I RGATCY 2 cut(s) 436, 587
BstXI CCANNNNNNTGG 1 cut(s) 658
BstYI RGATCY 2 cut(s) 436, 587
BsuI GTATCC 1 cut(s) 561
BsuRI GGCC 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 389
BtsCI GGATG 2 cut(s) 10, 490
Cac8I GCNNGC 1 cut(s) 238
CseI GACGC 1 cut(s) 590
Csp6I GTAC 3 cut(s) 112, 267, 391
CviAII CATG 3 cut(s) 366, 446, 655
CviJI RGCY 5 cut(s) 41, 214, 464, 502, 662
CviKI_1 RGCY 5 cut(s) 41, 214, 464, 502, 662
CviQI GTAC 3 cut(s) 112, 267, 391
DpnI GATC 5 cut(s) 131, 168, 303, 438, 589
DpnII GATC 5 cut(s) 129, 166, 301, 436, 587
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 371
FaeI CATG 3 cut(s) 369, 449, 658
FatI CATG 3 cut(s) 365, 445, 654
FauI CCCGC 1 cut(s) 371
FbaI TGATCA 1 cut(s) 129
FokI GGATG 2 cut(s) 17, 497
FspBI CTAG 2 cut(s) 428, 440
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 565
HgaI GACGC 1 cut(s) 590
Hin1I GRCGYC 1 cut(s) 601
Hin1II CATG 3 cut(s) 369, 449, 658
HincII GTYRAC 2 cut(s) 199, 298
HindII GTYRAC 2 cut(s) 199, 298
HinfI GANTC 1 cut(s) 493
HpaI GTTAAC 1 cut(s) 298
HpaII CCGG 1 cut(s) 565
HphI GGTGA 5 cut(s) 16, 43, 86, 151, 596
Hpy166II GTNNAC 5 cut(s) 61, 94, 199, 269, 298
Hpy188I TCNGA 2 cut(s) 124, 498
Hpy188III TCNNGA 3 cut(s) 291, 414, 565
Hpy8I GTNNAC 5 cut(s) 61, 94, 199, 269, 298
Hpy99I CGWCG 4 cut(s) 212, 335, 579, 582
HpyAV CCTTC 3 cut(s) 58, 166, 591
HpyCH4V TGCA 4 cut(s) 138, 236, 369, 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 375, 461
Hsp92I GRCGYC 1 cut(s) 601
Hsp92II CATG 3 cut(s) 369, 449, 658
Kpn2I TCCGGA 1 cut(s) 564
Ksp22I TGATCA 1 cut(s) 129
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 5 cut(s) 129, 166, 301, 436, 587
MaeI CTAG 2 cut(s) 428, 440
MaeIII GTNAC 1 cut(s) 602
MalI GATC 5 cut(s) 131, 168, 303, 438, 589
MboI GATC 5 cut(s) 129, 166, 301, 436, 587
MboII GAAGA 3 cut(s) 26, 74, 526
MfeI CAATTG 1 cut(s) 352
MflI RGATCY 2 cut(s) 436, 587
MluCI AATT 5 cut(s) 181, 242, 275, 352, 615
MnlI CCTC 4 cut(s) 52, 90, 182, 691
Mph1103I ATGCAT 1 cut(s) 371
MroI TCCGGA 1 cut(s) 564
MseI TTAA 2 cut(s) 297, 521
MslI CAYNNNNRTG 2 cut(s) 309, 450
MspI CCGG 1 cut(s) 565
MspR9I CCNGG 1 cut(s) 216
MunI CAATTG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 233, 375, 461
NdeII GATC 5 cut(s) 129, 166, 301, 436, 587
NlaIII CATG 3 cut(s) 369, 449, 658
NlaIV GGNNCC 2 cut(s) 205, 679
NmuCI GTSAC 1 cut(s) 602
NsiI ATGCAT 1 cut(s) 371
NspI RCATGY 2 cut(s) 369, 449
PaeR7I CTCGAG 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 205, 679
PstI CTGCAG 1 cut(s) 238
PsuI RGATCY 2 cut(s) 436, 587
RsaI GTAC 3 cut(s) 113, 268, 392
RsaNI GTAC 3 cut(s) 112, 267, 391
RseI CAYNNNNRTG 2 cut(s) 309, 450
SaqAI TTAA 2 cut(s) 297, 521
Sau3AI GATC 5 cut(s) 129, 166, 301, 436, 587
SbfI CCTGCAGG 1 cut(s) 238
ScaI AGTACT 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 216
SdaI CCTGCAGG 1 cut(s) 238
SetI ASST 4 cut(s) 29, 82, 504, 511
SfcI CTRYAG 1 cut(s) 234
Sfr274I CTCGAG 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 291
SmiMI CAYNNNNRTG 2 cut(s) 309, 450
SmlI CTYRAG 2 cut(s) 291, 412
SmoI CTYRAG 2 cut(s) 291, 412
Sse8387I CCTGCAGG 1 cut(s) 238
Sse9I AATT 5 cut(s) 181, 242, 275, 352, 615
SsiI CCGC 2 cut(s) 225, 378
SspI AATATT 1 cut(s) 385
SspMI CTAG 2 cut(s) 428, 440
StyD4I CCNGG 1 cut(s) 214
TaqI TCGA 2 cut(s) 102, 292
TasI AATT 5 cut(s) 181, 242, 275, 352, 615
TatI WGTACW 3 cut(s) 111, 266, 390
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 2 cut(s) 297, 521
Tru9I TTAA 2 cut(s) 297, 521
TseFI GTSAC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 2 cut(s) 216, 563
VspI ATTAAT 1 cut(s) 521
XapI RAATTY 1 cut(s) 242
XceI RCATGY 2 cut(s) 369, 449
XhoI CTCGAG 1 cut(s) 291
XspI CTAG 2 cut(s) 428, 440
ZrmI AGTACT 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.