Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008797

Physical Location & Seq

Genomic Coordinates Reverse (-)

18964788 .. 18966696

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGACGAGTTTCATCCGTCTTGTCTCCGTGTGTTACCTACTCACCTCCTCCTTCACCTCTCCTCATTCTCTCCCCATCCCACCTCTTGTTGGAGTTCACCCACTCGATGAAAAATACTATGGTTCAGAGGTGATCAACTGCAGGGATGGCTCCAAATCCTTCACTAGAGACCGTCTCAATGATGATTTCTGTGACTGCCTTGACGGAACCGATGAGCCTGGGACTTCCGCTTGCCATGCAGGAAAATTCTATTGTTTGAATAGCGGAAGTACTCCGCGCTTCCTATTTTCTTCTCGAGTTAACGATCAGGTTTGTGTGTTGAGGATGGGCTTTCAGTCTGAATTCCGAAGCTCTCTAAATTTTGGCATGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH-like

Protein Analysis

126

Amino Acids

13.94

Weight (kDa)

5.48

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42390
fragaria_vesca	FvH4_6g26960 FvH4_6g26960 FvH4_6g26960 FvH4_6g26960
malus_domestica	MD02G1242400.v1.1
prunus_persica	Prupe.3G125900_v2.0.a1 Prupe.3G125900_v2.0.a1 Prupe.3G125900_v2.0.a1 Prupe.3G125900_v2.0.a1
pyrus_communis	pycom02g20910
rosa_chinensis	RchiOBHm_Chr2g0128801
rosa_laevigata	RLG00000019025
rosa_multiflora	Rmu_sc0005514.1_g000021
rosa_roxburghii	Rroxscaffold_2G00115260
rosa_rugosa	Rorug02G0280800 Rorug02G0280900 Rorug02G0281000
rosa_samantha	Rh2AG333900 Rh2BG341800 Rh2CG320700 Rh2DG358500
rosa_wichuraiana	Rw2G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	280
AciI	CCGC	3 cut(s)	231, 267, 278
AcsI	RAATTY	3 cut(s)	248, 344, 361
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	1 cut(s)	354
AluI	AGCT	1 cut(s)	354
Alw26I	GTCTC	3 cut(s)	31, 165, 182
Ama87I	CYCGRG	1 cut(s)	297
ApoI	RAATTY	3 cut(s)	248, 344, 361
AspLEI	GCGC	1 cut(s)	282
AsuHPI	GGTGA	4 cut(s)	37, 49, 92, 145
AvaI	CYCGRG	1 cut(s)	297
BccI	CCATC	3 cut(s)	86, 143, 322
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	3 cut(s)	31, 165, 182
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	142
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	297
BmiI	GGNNCC	2 cut(s)	154, 211
BmrFI	CCNGG	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	4 cut(s)	15, 78, 154, 333
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseRI	GAGGAG	2 cut(s)	40, 54
Bsh1236I	CGCG	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	3 cut(s)	31, 165, 182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	238
Bso31I	GGTCTC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	135, 307
BspACI	CCGC	3 cut(s)	231, 267, 278
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	154, 211
BspMAI	CTGCAG	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	135, 307
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	235
BstF5I	GGATG	4 cut(s)	15, 78, 154, 333
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	138, 310
BstMAI	GTCTC	3 cut(s)	31, 165, 182
BstMBI	GATC	2 cut(s)	135, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 239
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	280
BtsCI	GGATG	4 cut(s)	15, 78, 154, 333
Cac8I	GCNNGC	1 cut(s)	235
CfoI	GCGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	2 cut(s)	239, 370
CviJI	RGCY	4 cut(s)	153, 220, 333, 354
CviKI_1	RGCY	4 cut(s)	153, 220, 333, 354
CviQI	GTAC	1 cut(s)	273
DpnI	GATC	2 cut(s)	137, 309
DpnII	GATC	2 cut(s)	135, 307
Eco31I	GGTCTC	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	2 cut(s)	242, 373
FaiI	YATR	4 cut(s)	123, 240, 371, 376
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	238, 369
FbaI	TGATCA	1 cut(s)	135
FokI	GGATG	4 cut(s)	2, 65, 161, 340
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	242, 373
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HpaI	GTTAAC	1 cut(s)	304
HphI	GGTGA	4 cut(s)	37, 49, 92, 145
Hpy166II	GTNNAC	2 cut(s)	100, 304
Hpy188I	TCNGA	3 cut(s)	130, 343, 350
Hpy188III	TCNNGA	1 cut(s)	297
Hpy8I	GTNNAC	2 cut(s)	100, 304
HpyAV	CCTTC	2 cut(s)	64, 172
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	144, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 239
Hsp92II	CATG	2 cut(s)	242, 373
HspAI	GCGC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	135
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	135, 307
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	5 cut(s)	130, 207, 228, 234, 296
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	35, 194
MalI	GATC	2 cut(s)	137, 309
MboI	GATC	2 cut(s)	135, 307
MboII	GAAGA	1 cut(s)	285
MluCI	AATT	3 cut(s)	248, 344, 361
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	58, 61, 70, 75, 96, 124, 318
MseI	TTAA	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	2 cut(s)	150, 239
NdeII	GATC	2 cut(s)	135, 307
NlaIII	CATG	2 cut(s)	242, 373
NlaIV	GGNNCC	2 cut(s)	154, 211
NmuCI	GTSAC	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	154, 211
PstI	CTGCAG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	135, 307
ScaI	AGTACT	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	7 cut(s)	42, 50, 62, 88, 135, 315, 356
SfcI	CTRYAG	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	248, 344, 361
SsiI	CCGC	3 cut(s)	231, 267, 278
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	108, 298
TasI	AATT	3 cut(s)	248, 344, 361
TatI	WGTACW	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	4, 126
TspGWI	ACGGA	3 cut(s)	8, 19, 222
XapI	RAATTY	3 cut(s)	248, 344, 361
XhoI	CTCGAG	1 cut(s)	297
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.