RLG00000019025

Glucosidase 2 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008797
Physical Location & Seq
Forward (+)
44947238 .. 44949158
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019025

Sequence Viewer

Length: 585 bp
ATGGGGACGAGTTTCATATGGTCCGTTCTTCTGGTTTCGTCCTTCTCCTTTGTTCGCTCATTCTCTAATCCATCTCTTCTTGGAGTTCATCCACTCGATGAACAGTACTTTGCCCCAGAAGTGATCAAGTGCAAGGACGACTCCAAGTCTTTCACCAGAGACCGTCTCAATGATAATTTCTGTGACTGTGTTGATGGGACTGACGAGCCTGGGACTTCTGCTTGTCCTGCAGGCAAATTTTATTGTCGGAATATTGGAAGTACACCACAGTTCATATTTTCTTCTCGAGTTAATGATCGTATTTGTGATTGCTGCGATGGAAGTGATGAGAATGATGGTAGTCTCAATTGTCCAAATACATGCATCATGGGCGGGAATGTTGAGTACAAAACTGACCACCGCTTCTCTAGAGTCCGGGATCGAGGGTATGTTGACAAAAAGCAAACCGAAAATAGAGTCAGTCTGGATGACTTTGTTCAGAAGCTTAAAGGTTTGAAGATAATAATAATTATCAAAACGAAGACGTTATCGTTAAAATATTTTTTCAGGTCCTATGACAATATATGGCTAACGTGCTTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
PRKCSH-like

Protein Analysis

195

Amino Acids

22.08

Weight (kDa)

6.7

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRKCSH-like PF12999 20 - 131 2e-31 Glucosidase II beta subunit-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 372, 400
AclWI GGATC 1 cut(s) 426
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 3 cut(s) 107, 262, 386
AgsI TTSAA 1 cut(s) 496
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 484
AluI AGCT 1 cut(s) 484
Alw26I GTCTC 3 cut(s) 153, 170, 347
AlwI GGATC 1 cut(s) 426
Ama87I CYCGRG 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 236
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
AspS9I GGNCC 2 cut(s) 21, 549
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 21, 549
BbsI GAAGAC 1 cut(s) 527
BbvI GCAGC 1 cut(s) 299
BccI CCATC 4 cut(s) 79, 188, 311, 329
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 123
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 3 cut(s) 153, 170, 347
BfaI CTAG 2 cut(s) 408, 583
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 210, 416
Bme18I GGWCC 2 cut(s) 21, 549
BmeRI GACNNNNNGTC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 21, 549
BmrFI CCNGG 2 cut(s) 210, 416
BmsI GCATC 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 527
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpuMI CCSGG 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 88, 472
BseXI GCAGC 1 cut(s) 299
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 415
BslFI GGGAC 3 cut(s) 19, 211, 226
BsmAI GTCTC 3 cut(s) 153, 170, 347
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 3 cut(s) 19, 211, 226
Bso31I GGTCTC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 285
Bsp143I GATC 3 cut(s) 123, 295, 418
BspACI CCGC 2 cut(s) 372, 400
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 3 cut(s) 123, 295, 418
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 4 cut(s) 105, 164, 188, 270
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 232
BstF5I GGATG 2 cut(s) 88, 472
BstKTI GATC 3 cut(s) 126, 298, 421
BstMAI GTCTC 3 cut(s) 153, 170, 347
BstMBI GATC 3 cut(s) 123, 295, 418
BstMWI GCNNNNNNNGC 2 cut(s) 227, 369
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 208, 414
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 527
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 88, 472
Cac8I GCNNGC 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 21, 549
Csp6I GTAC 3 cut(s) 106, 261, 385
CviAII CATG 2 cut(s) 360, 367
CviJI RGCY 3 cut(s) 208, 484, 568
CviKI_1 RGCY 3 cut(s) 208, 484, 568
CviQI GTAC 3 cut(s) 106, 261, 385
DpnI GATC 3 cut(s) 125, 297, 420
DpnII GATC 3 cut(s) 123, 295, 418
DriI GACNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 81
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 21, 549
Eco88I CYCGRG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 208
EcoT22I ATGCAT 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 2 cut(s) 363, 370
FaiI YATR 9 cut(s) 17, 19, 275, 361, 368, 429, 555, 563, 565
FaqI GGGAC 3 cut(s) 19, 211, 226
FatI CATG 2 cut(s) 359, 366
FauI CCCGC 1 cut(s) 365
FauNDI CATATG 1 cut(s) 17
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 2 cut(s) 75, 479
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 2 cut(s) 408, 583
GluI GCNGC 1 cut(s) 313
HapII CCGG 1 cut(s) 415
Hin1II CATG 2 cut(s) 363, 370
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 3 cut(s) 140, 411, 456
HpaII CCGG 1 cut(s) 415
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 263, 433
Hpy188I TCNGA 2 cut(s) 249, 480
Hpy188III TCNNGA 3 cut(s) 285, 408, 464
Hpy8I GTNNAC 2 cut(s) 263, 433
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 4 cut(s) 105, 164, 188, 270
HpyCH4IV ACGT 2 cut(s) 524, 572
HpyCH4V TGCA 3 cut(s) 132, 230, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 369
HpySE526I ACGT 2 cut(s) 524, 572
Hsp92II CATG 2 cut(s) 363, 370
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 3 cut(s) 123, 295, 418
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 372
MaeI CTAG 2 cut(s) 408, 583
MaeII ACGT 2 cut(s) 524, 572
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 125, 297, 420
MboI GATC 3 cut(s) 123, 295, 418
MboII GAAGA 5 cut(s) 20, 68, 273, 508, 532
MfeI CAATTG 1 cut(s) 346
MluCI AATT 4 cut(s) 175, 236, 346, 507
MlyI GAGTC 3 cut(s) 134, 420, 465
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 1 cut(s) 416
Mph1103I ATGCAT 1 cut(s) 365
MseI TTAA 3 cut(s) 291, 486, 533
MspI CCGG 1 cut(s) 415
MspR9I CCNGG 2 cut(s) 210, 416
MunI CAATTG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 227, 369
NciI CCSGG 1 cut(s) 416
NdeI CATATG 1 cut(s) 17
NdeII GATC 3 cut(s) 123, 295, 418
NlaIII CATG 2 cut(s) 363, 370
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 285
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 3 cut(s) 134, 419, 464
PpsI GAGTC 3 cut(s) 134, 419, 464
PpuMI RGGWCCY 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspPI GGNCC 2 cut(s) 21, 549
PspPPI RGGWCCY 1 cut(s) 549
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 3 cut(s) 107, 262, 386
RsaNI GTAC 3 cut(s) 106, 261, 385
SaqAI TTAA 3 cut(s) 291, 486, 533
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 3 cut(s) 123, 295, 418
Sau96I GGNCC 2 cut(s) 21, 549
SbfI CCTGCAGG 1 cut(s) 232
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 3 cut(s) 134, 420, 465
ScrFI CCNGG 2 cut(s) 210, 416
SdaI CCTGCAGG 1 cut(s) 232
SetI ASST 5 cut(s) 486, 493, 527, 551, 575
SfaNI GCATC 1 cut(s) 372
SfcI CTRYAG 1 cut(s) 228
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 21, 549
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse8387I CCTGCAGG 1 cut(s) 232
Sse9I AATT 4 cut(s) 175, 236, 346, 507
SsiI CCGC 2 cut(s) 372, 400
SspI AATATT 2 cut(s) 253, 539
SspMI CTAG 2 cut(s) 408, 583
StyD4I CCNGG 2 cut(s) 208, 414
TaaI ACNGT 4 cut(s) 105, 164, 188, 270
TaiI ACGT 2 cut(s) 527, 575
TaqI TCGA 3 cut(s) 96, 286, 421
TasI AATT 4 cut(s) 175, 236, 346, 507
TatI WGTACW 3 cut(s) 105, 260, 384
Tru1I TTAA 3 cut(s) 291, 486, 533
Tru9I TTAA 3 cut(s) 291, 486, 533
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 4, 77, 114, 262
TspGWI ACGGA 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 21, 549
XapI RAATTY 1 cut(s) 236
XbaI TCTAGA 1 cut(s) 407
XceI RCATGY 1 cut(s) 363
XhoI CTCGAG 1 cut(s) 285
XspI CTAG 2 cut(s) 408, 583
ZrmI AGTACT 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.