AT2G42430

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012742
Physical Location & Seq
Forward (+)
17663353 .. 17665337
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42430.1

Sequence Viewer

Length: 738 bp
ATGGCATCTTCCGGTAACGGTACAACGGCGGGGACAGGTTCACCATGCGGTGCATGCAAGTTCTTGAGGAGGAAGTGCGCATCCGATTGTATATTTGCACCGTACTTCTCATCGGAGCAAGGAGCAGCAAGATTCGCAGCTATTCACAAGGTGTTTGGAGCAAGCAACGTTTCTAAGCTCTTGCTTAATGTTCCAATCCATGATCGATGTGAAGCTGTCGTCACCATCGCCTACGAAGCTCAGGCTCGTCTTCATGACCCTGTTTATGGATGTGTCTCTCATATCTTTGCCCTCCAACAACAGGTGGCTTTCTTGCAATCACAAGTCATGCAAATGAAGGCACAGATAGCTGGCCACCAGACGTCAGCCGCCGGAGATCTAAGACACAGCTCGGAAAGTACCAACCAGTTTATGACGTGGCAACAAACTAGTGTCTCTCCGATCGGTAGTGCATACTCAACACCGTATAACCATCATCAACCTTACTACGGTCATGTAAACCCTAACAATCCGGTCTCGCCACAGAGCTCGCTAGAAGAATCTTTCAGCAACACGAGCAGTGACGTCACCACAACAGCCAACGTGCGAGAGACTCATCATCAAACCGGAGGAGGAGTATACGGTCACGATGGAATAGGGTTTCACGAAGGATATCCTAACAAGAAGAGATCAGTGAGTTATTGTAGTAGCGATTTAGGTGAGCTTCAGGCTTTGGCTCTTAGAATGATGAAGAACTAA

Protein Analysis

245

Amino Acids

26.47

Weight (kDa)

7.7

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 15 - 113 3.8e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012742)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42430
fragaria_vesca FvH4_2g21970
malus_domestica MD05G1200900.v1.1 MD10G1187700.v1.1
prunus_persica Prupe.8G227500_v2.0.a1 Prupe.8G227500_v2.0.a1
pyrus_communis pycom05g18770 pycom10g16220
rosa_chinensis RchiOBHm_Chr6g0288851
rosa_laevigata RLG00000012362
rosa_multiflora Rmu_sc0005314.1_g000014
rosa_roxburghii Rroxscaffold_7G00179840
rosa_rugosa Rorug06G0198500
rosa_samantha Rh6AG309900 Rh6BG315800 Rh6CG323300 Rh6DG309000
rosa_wichuraiana Rw6G026790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 365, 567
Acc16I TGCGCA 1 cut(s) 79
AccI GTMKAC 1 cut(s) 618
AciI CCGC 3 cut(s) 29, 48, 369
AclI AACGTT 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 689
AcyI GRCGYC 2 cut(s) 362, 564
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 3 cut(s) 22, 104, 400
AfiI CCNNNNNNNGG 3 cut(s) 266, 301, 488
AhlI ACTAGT 1 cut(s) 428
AjiI CACGTC 1 cut(s) 417
AluBI AGCT 8 cut(s) 140, 178, 215, 239, 350, 390, 528, 703
AluI AGCT 8 cut(s) 140, 178, 215, 239, 350, 390, 528, 703
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 4 cut(s) 280, 439, 520, 584
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 125, 137
AspLEI GCGC 1 cut(s) 80
AsuHPI GGTGA 4 cut(s) 33, 214, 559, 710
BalI TGGCCA 1 cut(s) 354
BanII GRGCYC 1 cut(s) 530
BauI CACGAG 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 2 cut(s) 137, 149
BccI CCATC 3 cut(s) 233, 480, 623
BceAI ACGGC 1 cut(s) 42
BcoDI GTCTC 4 cut(s) 280, 439, 520, 584
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 2 cut(s) 429, 533
BglII AGATCT 1 cut(s) 376
BisI GCNGC 3 cut(s) 126, 138, 369
BlsI GCNGC 3 cut(s) 127, 139, 370
BmgBI CACGTC 1 cut(s) 417
BmsI GCATC 2 cut(s) 14, 89
BpiI GAAGAC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 85
Bsa29I ATCGAT 1 cut(s) 205
BsaHI GRCGYC 2 cut(s) 362, 564
BsaI GGTCTC 1 cut(s) 520
BsaWI WCCGGW 3 cut(s) 11, 511, 605
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 301, 488
Bse1I ACTGG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 205
BseGI GGATG 2 cut(s) 80, 275
BseLI CCNNNNNNNGG 3 cut(s) 266, 301, 488
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 406
BseRI GAGGAG 3 cut(s) 82, 624, 627
BseXI GCAGC 2 cut(s) 137, 149
Bsh1285I CGRYCG 1 cut(s) 444
BshFI GGCC 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 444
BsiHKAI GWGCWC 1 cut(s) 530
BsiSI CCGG 4 cut(s) 12, 372, 512, 606
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 266, 301, 488
BsmAI GTCTC 4 cut(s) 280, 439, 520, 584
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 1 cut(s) 354
Bso31I GGTCTC 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 4 cut(s) 202, 376, 441, 668
BspACI CCGC 3 cut(s) 29, 48, 369
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 253
BspDI ATCGAT 1 cut(s) 205
BspHI TCATGA 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 520
BsrI ACTGG 1 cut(s) 406
BssMI GATC 4 cut(s) 202, 376, 441, 668
BssNAI GTATAC 1 cut(s) 619
BssNI GRCGYC 2 cut(s) 362, 564
BssSI CACGAG 1 cut(s) 553
Bst1107I GTATAC 1 cut(s) 619
Bst2BI CACGAG 1 cut(s) 553
Bst4CI ACNGT 5 cut(s) 20, 102, 465, 491, 623
Bst6I CTCTTC 1 cut(s) 659
BstACI GRCGYC 2 cut(s) 362, 564
BstC8I GCNNGC 4 cut(s) 55, 163, 352, 530
BstDEI CTNAG 4 cut(s) 174, 240, 380, 719
BstF5I GGATG 2 cut(s) 80, 275
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 4 cut(s) 205, 379, 444, 671
BstMAI GTCTC 4 cut(s) 280, 439, 520, 584
BstMBI GATC 4 cut(s) 202, 376, 441, 668
BstMCI CGRYCG 1 cut(s) 444
BstMWI GCNNNNNNNGC 5 cut(s) 54, 134, 236, 347, 555
BstNSI RCATGY 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 137, 149
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BstZ17I GTATAC 1 cut(s) 619
Bsu15I ATCGAT 1 cut(s) 205
BsuRI GGCC 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 205
BtgZI GCGATG 1 cut(s) 211
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 2 cut(s) 80, 275
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 2 cut(s) 565, 678
Cac8I GCNNGC 4 cut(s) 55, 163, 352, 530
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 80
ClaI ATCGAT 1 cut(s) 205
Csp6I GTAC 3 cut(s) 21, 103, 399
CviAII CATG 6 cut(s) 45, 54, 200, 254, 328, 494
CviQI GTAC 3 cut(s) 21, 103, 399
DdeI CTNAG 4 cut(s) 174, 240, 380, 719
DpnI GATC 4 cut(s) 204, 378, 443, 670
DpnII GATC 4 cut(s) 202, 376, 441, 668
DraIII CACNNNGTG 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Ecl136II GAGCTC 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 530
Eco31I GGTCTC 1 cut(s) 520
Eco32I GATATC 1 cut(s) 653
Eco53kI GAGCTC 1 cut(s) 528
Eco57I CTGAAG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 528
EcoRV GATATC 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 530
FaeI CATG 6 cut(s) 48, 57, 203, 257, 331, 497
FaqI GGGAC 1 cut(s) 46
FatI CATG 6 cut(s) 44, 53, 199, 253, 327, 493
FauI CCCGC 1 cut(s) 22
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 3 cut(s) 126, 138, 369
FokI GGATG 2 cut(s) 67, 282
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 3 cut(s) 126, 138, 369
FspAI RTGCGCAY 1 cut(s) 79
FspBI CTAG 2 cut(s) 429, 533
FspI TGCGCA 1 cut(s) 79
GlaI GCGC 1 cut(s) 79
GluI GCNGC 3 cut(s) 126, 138, 369
HaeIII GGCC 1 cut(s) 354
HapII CCGG 4 cut(s) 12, 372, 512, 606
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 2 cut(s) 362, 564
Hin1II CATG 6 cut(s) 48, 57, 203, 257, 331, 497
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 3 cut(s) 132, 539, 592
HpaII CCGG 4 cut(s) 12, 372, 512, 606
HphI GGTGA 4 cut(s) 33, 214, 559, 710
Hpy166II GTNNAC 3 cut(s) 41, 499, 619
Hpy188I TCNGA 4 cut(s) 85, 115, 394, 441
Hpy188III TCNNGA 4 cut(s) 64, 254, 626, 644
Hpy8I GTNNAC 3 cut(s) 41, 499, 619
HpyAV CCTTC 2 cut(s) 331, 641
HpyCH4III ACNGT 5 cut(s) 20, 102, 465, 491, 623
HpyCH4IV ACGT 5 cut(s) 168, 362, 416, 564, 582
HpyCH4V TGCA 6 cut(s) 53, 57, 98, 316, 331, 452
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 134, 236, 347, 555
HpyF3I CTNAG 4 cut(s) 174, 240, 380, 719
HpySE526I ACGT 5 cut(s) 168, 362, 416, 564, 582
Hsp92I GRCGYC 2 cut(s) 362, 564
Hsp92II CATG 6 cut(s) 48, 57, 203, 257, 331, 497
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 4 cut(s) 202, 376, 441, 668
LmnI GCTCC 3 cut(s) 115, 122, 158
Lsp1109I GCAGC 2 cut(s) 137, 149
LweI GCATC 2 cut(s) 14, 89
MaeI CTAG 2 cut(s) 429, 533
MaeII ACGT 5 cut(s) 168, 362, 416, 564, 582
MaeIII GTNAC 5 cut(s) 14, 220, 560, 565, 623
MalI GATC 4 cut(s) 204, 378, 443, 670
MboI GATC 4 cut(s) 202, 376, 441, 668
MboII GAAGA 3 cut(s) 242, 548, 676
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 530
MlsI TGGCCA 1 cut(s) 354
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 5 cut(s) 60, 63, 302, 602, 605
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 354
MspI CCGG 4 cut(s) 12, 372, 512, 606
MwoI GCNNNNNNNGC 5 cut(s) 54, 134, 236, 347, 555
NdeII GATC 4 cut(s) 202, 376, 441, 668
NlaIII CATG 6 cut(s) 48, 57, 203, 257, 331, 497
NmuCI GTSAC 4 cut(s) 220, 560, 565, 623
NsbI TGCGCA 1 cut(s) 79
NspI RCATGY 1 cut(s) 57
PaeI GCATGC 1 cut(s) 57
PagI TCATGA 1 cut(s) 253
PfeI GAWTC 2 cut(s) 132, 539
PkrI GCNGC 3 cut(s) 127, 139, 370
Ple19I CGATCG 1 cut(s) 444
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
Psp124BI GAGCTC 1 cut(s) 530
Psp1406I AACGTT 1 cut(s) 168
PsuI RGATCY 1 cut(s) 376
PvuI CGATCG 1 cut(s) 444
RsaI GTAC 3 cut(s) 22, 104, 400
RsaNI GTAC 3 cut(s) 21, 103, 399
RseI CAYNNNNRTG 1 cut(s) 332
SacI GAGCTC 1 cut(s) 530
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 3 cut(s) 126, 138, 369
Sau3AI GATC 4 cut(s) 202, 376, 441, 668
SchI GAGTC 1 cut(s) 586
SduI GDGCHC 1 cut(s) 530
SfaNI GCATC 2 cut(s) 14, 89
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SpeI ACTAGT 1 cut(s) 428
SphI GCATGC 1 cut(s) 57
SsiI CCGC 3 cut(s) 29, 48, 369
SspMI CTAG 2 cut(s) 429, 533
SstI GAGCTC 1 cut(s) 530
TaaI ACNGT 5 cut(s) 20, 102, 465, 491, 623
TaiI ACGT 5 cut(s) 171, 365, 419, 567, 585
TaqI TCGA 1 cut(s) 205
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 2 cut(s) 132, 539
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 565, 678
TseFI GTSAC 4 cut(s) 220, 560, 565, 623
TseI GCWGC 2 cut(s) 125, 137
Tsp45I GTSAC 4 cut(s) 220, 560, 565, 623
TspDTI ATGAA 2 cut(s) 242, 350
TspRI CASTG 2 cut(s) 565, 678
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 618
XspI CTAG 2 cut(s) 429, 533
ZraI GACGTC 2 cut(s) 363, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.