Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Reverse (-)

31960257 .. 31964124

Gene Structure 3868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0198500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGGAAAGCATCATTTCCGCCTGGTTTTCGGTTTTCTCCAACTGATGTTGAGCTTGTGAAATACTATTTGAAGAGGAAAGTAATGGGGAAAAGACTTCATGTTAAAGTCATTGCCGAGGTTGACATTTACAAGTACGCTCCTTGGGATCTTCCAGACAAATCTTGTTGGCGATTTGGAGATCTAAAATGGTACTTCTTTTCTCCTATAGAAAAGAAATATGCAACTGGGGCTAGAGTGAATCGTGCCACTGAAGCTGGGTACTGGAAAATGTCAGGAAAGGATAGATCTGTTAATTACAATGGTGAAGTGGTCGGCTGGATCAAGTCTTTAGTTTTTTACACAGGTCGACCTTCACTAGGAGAACGGACAGATTGGGTTTTGCATGAGTATAGGCTTGAAGATAAGGGCGTGCCTCTGGAATCATATGTTTTATGTGTACTTTTCCAAAAGGAAGGGCAAGGGCCAAAAAATGGTGCACAATATGGTGCACCCTTTAAAGAGGAAGATTGGACTGATGATGAGGTTGAAATCTGTTTAGACACAGTCCCACATGCAAATAGGCCTGAGCCAGACCTTGTTCTGCCTAGGGGATATAATAGTTCCAGTCTTACTAGCACAGATTGCCCTGAGGGTATGTGCATAGGCCCTTCATCTGAATCCTGCATATCAGATGTTGTACCACCTTCTTGCAATATTTTCTGCTCAGTTCCCAGTAATTCTGTTACAACAGAGAAGCAGTCTGTTTCAGCCGGTGCTGATATCCTGTCCATGTTAGATTGCTTTGTGGAAGAAAGCACTTTCCTTATCAATGGCAATGACAAAAATAAGGAGCTTGATAACCTGATTCATTCTGGAAATACAAGTACCACACAGAAGCTTGATATTCTGAATTCTAGAAATGCAAATGCTACAGAGGAGCGTGATAATATTCCTCATTCTGGAAATGCGAATGCTACAGATCATTTTAATAGAAGTGATATTTATAGAGATTTAGCAGACTTGGGCAACTTGGGTAGAGTTGAAGACGGGCATGGTTCTGTGTATACCATGGACGAGATTTTCGAGCTAGTTGATCTTGACAAACCGTTGAACTGCGATACTTCCATGTATAATTTACCATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

376

Amino Acids

42.12

Weight (kDa)

4.95

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	1.5e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccI	GTMKAC	2 cut(s)	349, 1046
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	156, 329
AcsI	RAATTY	1 cut(s)	892
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	6 cut(s)	137, 194, 263, 441, 681, 868
AfiI	CCNNNNNNNGG	3 cut(s)	359, 473, 941
AgsI	TTSAA	5 cut(s)	73, 401, 530, 1025, 1093
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	55, 257, 835, 880, 1069
AluI	AGCT	5 cut(s)	55, 257, 835, 880, 1069
Alw21I	GWGCWC	2 cut(s)	481, 493
Alw44I	GTGCAC	2 cut(s)	477, 489
AlwI	GGATC	2 cut(s)	156, 329
AoxI	GGCC	3 cut(s)	464, 563, 646
ApaLI	GTGCAC	2 cut(s)	477, 489
ApoI	RAATTY	1 cut(s)	892
ArsI	GACNNNNNNTTYG	2 cut(s)	1046, 1078
AspA2I	CCTAGG	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	464, 647
AsuHPI	GGTGA	1 cut(s)	317
AvrII	CCTAGG	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	630
BaeGI	GKGCMC	2 cut(s)	481, 493
BbsI	GAAGAC	1 cut(s)	1032
Bbv12I	GWGCWC	2 cut(s)	481, 493
BccI	CCATC	1 cut(s)	1129
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	6 cut(s)	234, 359, 588, 615, 897, 1070
BfmI	CTRYAG	3 cut(s)	207, 912, 957
BglII	AGATCT	2 cut(s)	181, 287
BlnI	CCTAGG	1 cut(s)	587
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	464, 647
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	2 cut(s)	237, 708
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	2 cut(s)	237, 708
BpiI	GAAGAC	1 cut(s)	1032
Bpu10I	CCTNAGC	1 cut(s)	567
BsaJI	CCNNGG	4 cut(s)	117, 143, 587, 1050
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 473, 941
Bse118I	RCCGGY	1 cut(s)	752
Bse1I	ACTGG	4 cut(s)	232, 269, 606, 714
Bse21I	CCTNAGG	1 cut(s)	630
Bse3DI	GCAATG	2 cut(s)	111, 823
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	117, 143, 587, 1050
BseLI	CCNNNNNNNGG	3 cut(s)	359, 473, 941
BseMI	GCAATG	2 cut(s)	111, 823
BseMII	CTCAG	3 cut(s)	558, 621, 720
BseNI	ACTGG	4 cut(s)	232, 269, 606, 714
BseRI	GAGGAG	1 cut(s)	932
BseSI	GKGCMC	2 cut(s)	481, 493
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	3 cut(s)	466, 565, 648
BsiHKAI	GWGCWC	2 cut(s)	481, 493
BsiSI	CCGG	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	359, 473, 941
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	958
BsnI	GGCC	3 cut(s)	466, 565, 648
Bsp1286I	GDGCHC	2 cut(s)	481, 493
Bsp143I	GATC	6 cut(s)	148, 181, 287, 321, 961, 1075
Bsp19I	CCATGG	1 cut(s)	1050
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	3 cut(s)	466, 565, 648
BspCNI	CTCAG	3 cut(s)	559, 622, 719
BspPI	GGATC	2 cut(s)	156, 329
BsrDI	GCAATG	2 cut(s)	111, 823
BsrFI	RCCGGY	1 cut(s)	752
BsrI	ACTGG	4 cut(s)	232, 269, 606, 714
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	4 cut(s)	117, 143, 587, 1050
BssMI	GATC	6 cut(s)	148, 181, 287, 321, 961, 1075
BssNAI	GTATAC	1 cut(s)	1047
BssT1I	CCWWGG	3 cut(s)	143, 587, 1050
Bst1107I	GTATAC	1 cut(s)	1047
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	547, 1089
Bst6I	CTCTTC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	3 cut(s)	567, 630, 706
BstDSI	CCRYGG	1 cut(s)	1050
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstKTI	GATC	6 cut(s)	151, 184, 290, 324, 964, 1078
BstMBI	GATC	6 cut(s)	148, 181, 287, 321, 961, 1075
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	3 cut(s)	207, 912, 957
BstSLI	GKGCMC	2 cut(s)	481, 493
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	3 cut(s)	148, 181, 287
BstYI	RGATCY	3 cut(s)	148, 181, 287
BstZ17I	GTATAC	1 cut(s)	1047
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	466, 565, 648
BtgI	CCRYGG	1 cut(s)	1050
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	752
Cfr13I	GGNCC	2 cut(s)	464, 647
Csp6I	GTAC	6 cut(s)	136, 193, 262, 440, 680, 867
CviAII	CATG	7 cut(s)	101, 386, 554, 772, 1034, 1051, 1108
CviQI	GTAC	6 cut(s)	136, 193, 262, 440, 680, 867
DdeI	CTNAG	3 cut(s)	567, 630, 706
DpnI	GATC	6 cut(s)	150, 183, 289, 323, 963, 1077
DpnII	GATC	6 cut(s)	148, 181, 287, 321, 961, 1075
DraI	TTTAAA	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	3 cut(s)	143, 587, 1050
Eco147I	AGGCCT	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	630
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	3 cut(s)	143, 587, 1050
ErhI	CCWWGG	3 cut(s)	143, 587, 1050
FaeI	CATG	7 cut(s)	104, 389, 557, 775, 1037, 1054, 1111
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	7 cut(s)	100, 385, 553, 771, 1033, 1050, 1107
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	349, 1046
FspBI	CTAG	6 cut(s)	234, 359, 588, 615, 897, 1070
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	466, 565, 648
HapII	CCGG	1 cut(s)	753
Hin1II	CATG	7 cut(s)	104, 389, 557, 775, 1037, 1054, 1111
HincII	GTYRAC	2 cut(s)	124, 350
HindII	GTYRAC	2 cut(s)	124, 350
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	4 cut(s)	241, 422, 659, 847
HpaII	CCGG	1 cut(s)	753
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	6 cut(s)	124, 350, 440, 479, 491, 1047
Hpy188I	TCNGA	3 cut(s)	658, 673, 891
Hpy188III	TCNNGA	7 cut(s)	155, 276, 419, 855, 897, 942, 1079
Hpy8I	GTNNAC	6 cut(s)	124, 350, 440, 479, 491, 1047
HpyAV	CCTTC	4 cut(s)	363, 449, 660, 696
HpyCH4III	ACNGT	2 cut(s)	547, 1089
HpyCH4V	TGCA	9 cut(s)	224, 385, 479, 491, 557, 642, 666, 693, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
HpyF3I	CTNAG	3 cut(s)	567, 630, 706
Hsp92II	CATG	7 cut(s)	104, 389, 557, 775, 1037, 1054, 1111
Kzo9I	GATC	6 cut(s)	148, 181, 287, 321, 961, 1075
LmnI	GCTCC	3 cut(s)	145, 832, 919
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	6 cut(s)	234, 359, 588, 615, 897, 1070
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	6 cut(s)	150, 183, 289, 323, 963, 1077
MboI	GATC	6 cut(s)	148, 181, 287, 321, 961, 1075
MboII	GAAGA	7 cut(s)	85, 143, 413, 518, 803, 1037, 1116
MflI	RGATCY	3 cut(s)	148, 181, 287
MhlI	GDGCHC	2 cut(s)	481, 493
MluCI	AATT	4 cut(s)	295, 718, 892, 1114
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	69, 112, 426, 496, 517, 625, 910, 945
MseI	TTAA	4 cut(s)	105, 294, 498, 969
MspI	CCGG	1 cut(s)	753
MspR9I	CCNGG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	958
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
NcoI	CCATGG	1 cut(s)	1050
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	6 cut(s)	148, 181, 287, 321, 961, 1075
NlaIII	CATG	7 cut(s)	104, 389, 557, 775, 1037, 1054, 1111
NmeAIII	GCCGAG	1 cut(s)	142
NspI	RCATGY	1 cut(s)	557
PceI	AGGCCT	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	1062
PctI	GAATGC	1 cut(s)	958
PfeI	GAWTC	4 cut(s)	241, 422, 659, 847
PflFI	GACNNNGTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	464, 647
PsuI	RGATCY	3 cut(s)	148, 181, 287
PsyI	GACNNNGTC	1 cut(s)	545
RsaI	GTAC	6 cut(s)	137, 194, 263, 441, 681, 868
RsaNI	GTAC	6 cut(s)	136, 193, 262, 440, 680, 867
SalI	GTCGAC	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	105, 294, 498, 969
Sau3AI	GATC	6 cut(s)	148, 181, 287, 321, 961, 1075
Sau96I	GGNCC	2 cut(s)	464, 647
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	481, 493
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	3 cut(s)	207, 912, 957
Sse9I	AATT	4 cut(s)	295, 718, 892, 1114
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	2 cut(s)	697, 931
SspMI	CTAG	6 cut(s)	234, 359, 588, 615, 897, 1070
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	3 cut(s)	143, 587, 1050
TaaI	ACNGT	2 cut(s)	547, 1089
TaqI	TCGA	2 cut(s)	349, 1065
TasI	AATT	4 cut(s)	295, 718, 892, 1114
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	4 cut(s)	241, 422, 659, 847
Tru1I	TTAA	4 cut(s)	105, 294, 498, 969
Tru9I	TTAA	4 cut(s)	105, 294, 498, 969
TscAI	CASTG	1 cut(s)	256
TspDTI	ATGAA	4 cut(s)	89, 642, 839, 1116
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	473
VneI	GTGCAC	2 cut(s)	477, 489
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	892
XbaI	TCTAGA	1 cut(s)	896
XceI	RCATGY	1 cut(s)	557
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	2 cut(s)	349, 1046
XspI	CTAG	6 cut(s)	234, 359, 588, 615, 897, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.