Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Forward (+)

20384712 .. 20386007

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G227400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTGAGAGGGTGTATTTTTGCTCCTTATTTCTGCCATGAACAGGGAGCTACCCATTTTTCTGCCATCCACAAGGTTTTTGGCGCAAGCAATGTGTCGAAGCTTTTAGCTCACCTTCCGTTGAGCGATCGTTGCGAAGCCGCGGTGACAATATCATATGAAGCTCAAGCCAGACTTCAAGATCCCATATATGGCTGTGTTTCACATATTTTTGCTCTCCAACAGCAGGTGGTCAACTTACAAGCACAGTTAGCTTCCCTCAAGGATCAAGCAGCTCAAAGCTTTGTCAATGGCTCTGCTGTAGCAAACCCTAATGAGAAATTTTATGGGAAACTTCCTTCTCACACTGAGGAAGCTCAAAGTTGGTTTCATGAGTTGGAAAATTCATCAAACTCCATGCCACAGTTCAATTCAACCCACATCAAGAATCCTGGAACTACATCATACTATGAGAATGAAATTATGAATTCAAATAACTCTGTTAATGGGAGTTACGAAAATTCAGTGAATATCCCAGAAGAAAATGTTTCATATGGCAGCTTCGAAGAGGGCACTTCTCATTCCATGTCTTCTTTTGGCATGCAAACAAATTACAACAGGCAATGGGGTTTTCAGGATGCTGATGAACTTCAATCAGTGGCTTTCAGCTACATTCACCAGCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

240

Amino Acids

26.43

Weight (kDa)

5.84

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	268
AccII	CGCG	1 cut(s)	194
AciI	CCGC	2 cut(s)	192, 194
AclWI	GGATC	2 cut(s)	227, 324
AcsI	RAATTY	4 cut(s)	371, 433, 517, 550
AfiI	CCNNNNNNNGG	3 cut(s)	94, 242, 277
AgsI	TTSAA	5 cut(s)	230, 460, 465, 522, 683
AjnI	CCWGG	1 cut(s)	481
AlwI	GGATC	2 cut(s)	227, 324
ApeKI	GCWGC	2 cut(s)	323, 588
ApoI	RAATTY	4 cut(s)	371, 433, 517, 550
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	155, 208, 698
AsuII	TTCGAA	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	612
BbvI	GCAGC	2 cut(s)	335, 600
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	3 cut(s)	192, 324, 589
BlsI	GCNGC	3 cut(s)	193, 325, 590
Bme1390I	CCNGG	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	594
BpuEI	CTTGAG	3 cut(s)	61, 201, 296
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 242, 277
Bse3DI	GCAATG	2 cut(s)	148, 659
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	117, 673
BseLI	CCNNNNNNNGG	3 cut(s)	94, 242, 277
BseMI	GCAATG	2 cut(s)	148, 659
BseMII	CTCAG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	2 cut(s)	335, 600
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	94, 242, 277
BsmI	GAATGC	1 cut(s)	712
Bsp119I	TTCGAA	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp143I	GATC	3 cut(s)	178, 232, 316
BspACI	CCGC	2 cut(s)	192, 194
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	194
BspHI	TCATGA	2 cut(s)	421, 716
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	227, 324
BspT104I	TTCGAA	1 cut(s)	594
BsrDI	GCAATG	2 cut(s)	148, 659
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	178, 232, 316
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	300, 456
Bst6I	CTCTTC	1 cut(s)	591
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	31, 139, 632
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	117, 673
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	181, 235, 319
BstMBI	GATC	3 cut(s)	178, 232, 316
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 302
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	605
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	335, 600
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	117, 673
BtsIMutI	CAGTG	3 cut(s)	396, 561, 693
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	31, 139, 632
CciI	TCATGA	2 cut(s)	421, 716
CfoI	GCGC	1 cut(s)	137
Cfr42I	CCGCGG	1 cut(s)	195
CviAII	CATG	6 cut(s)	89, 422, 448, 616, 631, 717
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	3 cut(s)	180, 234, 318
DpnII	GATC	3 cut(s)	178, 232, 316
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	481
FaeI	CATG	6 cut(s)	92, 425, 451, 619, 634, 720
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	6 cut(s)	88, 421, 447, 615, 630, 716
FauNDI	CATATG	2 cut(s)	208, 583
Fnu4HI	GCNGC	3 cut(s)	192, 324, 589
FokI	GGATG	2 cut(s)	104, 680
Fsp4HI	GCNGC	3 cut(s)	192, 324, 589
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	3 cut(s)	192, 324, 589
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	6 cut(s)	92, 425, 451, 619, 634, 720
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	2 cut(s)	152, 331
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	3 cut(s)	155, 208, 698
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188III	TCNNGA	6 cut(s)	40, 230, 422, 475, 665, 717
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	176, 399
HpyCH4III	ACNGT	2 cut(s)	300, 456
HpyCH4V	TGCA	2 cut(s)	33, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 302
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	6 cut(s)	92, 425, 451, 619, 634, 720
HspAI	GCGC	1 cut(s)	135
KspI	CCGCGG	1 cut(s)	195
Kzo9I	GATC	3 cut(s)	178, 232, 316
LmnI	GCTCC	3 cut(s)	26, 79, 98
LpnPI	CCDG	9 cut(s)	43, 80, 235, 263, 468, 495, 579, 634, 650
Lsp1109I	GCAGC	2 cut(s)	335, 600
LweI	GCATC	1 cut(s)	658
MaeIII	GTNAC	2 cut(s)	196, 542
MalI	GATC	3 cut(s)	180, 234, 318
MboI	GATC	3 cut(s)	178, 232, 316
MboII	GAAGA	4 cut(s)	57, 581, 608, 612
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	605
MluCI	AATT	7 cut(s)	371, 433, 460, 510, 517, 550, 640
MmeI	TCCRAC	2 cut(s)	295, 408
MnlI	CCTC	4 cut(s)	53, 320, 394, 592
MseI	TTAA	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	183, 302
NdeI	CATATG	2 cut(s)	208, 583
NdeII	GATC	3 cut(s)	178, 232, 316
NlaIII	CATG	6 cut(s)	92, 425, 451, 619, 634, 720
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	634
NspV	TTCGAA	1 cut(s)	594
PaeI	GCATGC	1 cut(s)	634
PagI	TCATGA	2 cut(s)	421, 716
PaqCI	CACCTGC	1 cut(s)	268
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	478
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	193, 325, 590
Ple19I	CGATCG	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	232
PvuI	CGATCG	1 cut(s)	181
SacII	CCGCGG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	3 cut(s)	192, 324, 589
Sau3AI	GATC	3 cut(s)	178, 232, 316
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	605
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	351
Sfr303I	CCGCGG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	594
SgrBI	CCGCGG	1 cut(s)	195
SmlI	CTYRAG	3 cut(s)	40, 216, 311
SmoI	CTYRAG	3 cut(s)	40, 216, 311
SphI	GCATGC	1 cut(s)	634
Sse9I	AATT	7 cut(s)	371, 433, 460, 510, 517, 550, 640
SsiI	CCGC	2 cut(s)	192, 194
StyD4I	CCNGG	1 cut(s)	481
TaaI	ACNGT	2 cut(s)	300, 456
TaqI	TCGA	2 cut(s)	149, 594
TasI	AATT	7 cut(s)	371, 433, 460, 510, 517, 550, 640
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	3 cut(s)	403, 561, 693
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	323, 588
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	9 cut(s)	105, 225, 410, 426, 522, 530, 570, 690, 705
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	3 cut(s)	403, 561, 693
XapI	RAATTY	4 cut(s)	371, 433, 517, 550
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.