Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Forward (+)

18122395 .. 18123527

Gene Structure 1133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGACTGGCTCTGGTTCTCCCTGTGGAGCCTGCAAGTTCTTGAGAAGAAGATGTGTGAGGGGTTGTATTTTTGCACCTTATTTCTGCCATGAAAATGGCGCTACCCATTTCGCTGCCATCCATAAGGTTTTCGGCGCAAGCAATGTGTCGAAGCTGCTGGCTCACCTTCCGGTGAGTGACCGTTGCGAAGCAGCGGTAACGATCTCGTATGAGGCTCAGGCCAGGCTCCAAGATCCCATTTATGGCTGTGTTTCACATATTTTTGCTCTCCAACAACAGGTTGTCAACCTACAGGCACAATTAGCTTCCATCAAGGATCAAGCACCTCAAAGCTTTGTGAATGGCTCTGAAGCTGTAGCAAACCCTAACCAGAATTGCTTTCCTGATTTAGAAAATTCATCTAACTCAGTGCCCCAAGTAAATTCTGACTACCATATCAATTACGGTGGAACAGCATCATACCATGAGAACGGAATTATGAGTTCAAACTCCATTGGGAGTAGTAATTATGATCAAAACTCAGGAATTAGGGATGAAAATGCATCCTATGGAAGCTTTGAAGAGGTGTCTCCTCCCCTGCAGTCTTCTTTCAACATGCAAATGAATAACAGGCAATATTGGGGTCATTATGATCGGGATGTGGATGAGCTTCAATCTATGGCTTTCAGCTATCAGCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

228

Amino Acids

24.98

Weight (kDa)

5.64

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 105	4.9e-35	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	227, 324
AcsI	RAATTY	2 cut(s)	394, 421
AcuI	CTGAAG	1 cut(s)	369
AfiI	CCNNNNNNNGG	2 cut(s)	242, 277
AgsI	TTSAA	4 cut(s)	486, 560, 592, 653
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	7 cut(s)	154, 305, 333, 353, 555, 649, 669
AluI	AGCT	7 cut(s)	154, 305, 333, 353, 555, 649, 669
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	2 cut(s)	227, 324
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	3 cut(s)	113, 154, 191
ApoI	RAATTY	2 cut(s)	394, 421
AspLEI	GCGC	2 cut(s)	101, 137
AsuHPI	GGTGA	2 cut(s)	155, 184
BaeGI	GKGCMC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	576
BbvI	GCAGC	3 cut(s)	100, 141, 203
BccI	CCATC	2 cut(s)	125, 317
BciT130I	CCWGG	1 cut(s)	223
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	573
BfmI	CTRYAG	3 cut(s)	290, 354, 578
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	3 cut(s)	114, 155, 192
BlsI	GCNGC	3 cut(s)	115, 156, 193
Bme1390I	CCNGG	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	28, 227
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	464, 551
BpiI	GAAGAC	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 277
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	223
BseGI	GGATG	5 cut(s)	117, 538, 542, 643, 649
BseLI	CCNNNNNNNGG	2 cut(s)	242, 277
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	230, 420, 534
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	100, 141, 203
BshFI	GGCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	242, 277
BsmAI	GTCTC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	5 cut(s)	201, 232, 316, 511, 631
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	3 cut(s)	229, 419, 533
BspLI	GGNNCC	2 cut(s)	28, 227
BspMAI	CTGCAG	1 cut(s)	582
BspPI	GGATC	2 cut(s)	227, 324
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	5 cut(s)	201, 232, 316, 511, 631
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	182, 446
Bst6I	CTCTTC	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	31, 139, 159
BstDEI	CTNAG	3 cut(s)	216, 406, 520
BstF5I	GGATG	5 cut(s)	117, 538, 542, 643, 649
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	101, 137
BstKTI	GATC	5 cut(s)	204, 235, 319, 514, 634
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	5 cut(s)	201, 232, 316, 511, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	3 cut(s)	290, 354, 578
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	100, 141, 203
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	5 cut(s)	117, 538, 542, 643, 649
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	3 cut(s)	31, 139, 159
CfoI	GCGC	2 cut(s)	101, 137
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	3 cut(s)	89, 464, 595
DdeI	CTNAG	3 cut(s)	216, 406, 520
DpnI	GATC	5 cut(s)	203, 234, 318, 513, 633
DpnII	GATC	5 cut(s)	201, 232, 316, 511, 631
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	544
FaeI	CATG	3 cut(s)	92, 467, 598
FatI	CATG	3 cut(s)	88, 463, 594
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	114, 155, 192
FokI	GGATG	5 cut(s)	104, 529, 545, 650, 656
Fsp4HI	GCNGC	3 cut(s)	114, 155, 192
GlaI	GCGC	2 cut(s)	100, 136
GluI	GCNGC	3 cut(s)	114, 155, 192
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	2 cut(s)	101, 137
Hin1II	CATG	3 cut(s)	92, 467, 598
Hin6I	GCGC	2 cut(s)	99, 135
HinP1I	GCGC	2 cut(s)	99, 135
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	2 cut(s)	331, 553
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	155, 184
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	349, 427
Hpy188III	TCNNGA	5 cut(s)	40, 383, 522, 635, 681
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	182, 446
HpyCH4V	TGCA	5 cut(s)	33, 74, 542, 580, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	3 cut(s)	216, 406, 520
Hsp92II	CATG	3 cut(s)	92, 467, 598
HspAI	GCGC	2 cut(s)	99, 135
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	201, 232, 316, 511, 631
LmnI	GCTCC	2 cut(s)	26, 231
Lsp1109I	GCAGC	3 cut(s)	100, 141, 203
LweI	GCATC	2 cut(s)	464, 551
MaeIII	GTNAC	2 cut(s)	176, 196
MalI	GATC	5 cut(s)	203, 234, 318, 513, 633
MboI	GATC	5 cut(s)	201, 232, 316, 511, 631
MboII	GAAGA	4 cut(s)	57, 60, 572, 576
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	8 cut(s)	299, 373, 394, 421, 439, 474, 505, 525
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	5 cut(s)	51, 205, 336, 556, 582
Mph1103I	ATGCAT	1 cut(s)	544
MslI	CAYNNNNRTG	2 cut(s)	93, 599
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	5 cut(s)	201, 232, 316, 511, 631
NlaIII	CATG	3 cut(s)	92, 467, 598
NlaIV	GGNNCC	2 cut(s)	28, 227
NmuCI	GTSAC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	598
PctI	GAATGC	1 cut(s)	676
PkrI	GCNGC	3 cut(s)	115, 156, 193
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	28, 227
PstI	CTGCAG	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	232
RseI	CAYNNNNRTG	2 cut(s)	93, 599
SatI	GCNGC	3 cut(s)	114, 155, 192
Sau3AI	GATC	5 cut(s)	201, 232, 316, 511, 631
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	464, 551
SfcI	CTRYAG	3 cut(s)	290, 354, 578
SmiMI	CAYNNNNRTG	2 cut(s)	93, 599
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	8 cut(s)	299, 373, 394, 421, 439, 474, 505, 525
SsiI	CCGC	1 cut(s)	194
SspI	AATATT	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	182, 446
TaqI	TCGA	1 cut(s)	149
TasI	AATT	8 cut(s)	299, 373, 394, 421, 439, 474, 505, 525
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	113, 154, 191
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	105, 387, 549, 617
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	414
XapI	RAATTY	2 cut(s)	394, 421
XceI	RCATGY	1 cut(s)	598
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.