Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Forward (+)

28252676 .. 28253520

Gene Structure 845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1187600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACAGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTGAGAGGGTGTATTTTTGCACCTTACTTCTGCCATGAACAAGGTGCTACCCATTTCTCGGCCATCCACAAGGTTTTTGGCGCAAGCAATGTGTCGAAGCTGCTTGCTCACCTTCCGGTGAGTGATCGTTGTGAAGCGGCCGTGACGATATCATATGAAGCTCAAGCGAGGCTTCAAGATCCCATTTATGGTTGTGTTTCACATATTTTTGCTCTCCAACAGCAGGTGGTCAGCTTACAAGCACAATTAGCTTCCCTTAAGGATCAAGCAGCTCAATGCTTTCTCAATGGCTCTGCTGTAGCTAACCCTAATGAGAAATTTTATGGGAAGGCTCCTTCTCACACAGAAGAAGCTCATAGTTGGTTTCATGAGTTAGAAAATTCATCAAACCCTTTGCCAAAATTGATCAATTCCAATGATGCTGGAACCACATCATACTATGAGAATGGAATGATGAATTCATATAACTCTGTTAATGGGAGTTACGAAAATTCAATGAATATCCCAGATGAAAATGTCTCTTCGTATGGCAGCTTTGAAGAGGGCACTTCTCATTCCATGTCTTCCTTTGACATGCAAACGAATTACAATAGGCAATGGGGTTTTCAGGATGCTGATGAACTTCAGCCAGTGGCTTTCAGATACACTGACCTGCATTCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

240

Amino Acids

26.44

Weight (kDa)

5.76

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 105	8.3e-35	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	2 cut(s)	268, 714
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	2 cut(s)	227, 324
AcoI	YGGCCR	2 cut(s)	114, 192
AcsI	RAATTY	4 cut(s)	371, 433, 511, 544
AcuI	CTGAAG	1 cut(s)	662
AfiI	CCNNNNNNNGG	3 cut(s)	112, 242, 277
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	230, 549, 593
AluBI	AGCT	8 cut(s)	154, 215, 288, 305, 326, 356, 407, 588
AluI	AGCT	8 cut(s)	154, 215, 288, 305, 326, 356, 407, 588
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	2 cut(s)	227, 324
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	114, 192
ApeKI	GCWGC	3 cut(s)	154, 323, 585
ApoI	RAATTY	4 cut(s)	371, 433, 511, 544
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	155, 184
BaeGI	GKGCMC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	609
BbvI	GCAGC	3 cut(s)	141, 335, 597
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	577
BfmI	CTRYAG	1 cut(s)	351
BfrI	CTTAAG	1 cut(s)	311
BfuAI	ACCTGC	2 cut(s)	268, 714
BisI	GCNGC	4 cut(s)	155, 192, 324, 586
BlsI	GCNGC	4 cut(s)	156, 193, 325, 587
BmiI	GGNNCC	3 cut(s)	28, 387, 481
BmsI	GCATC	2 cut(s)	463, 655
BpiI	GAAGAC	1 cut(s)	609
BpuEI	CTTGAG	2 cut(s)	61, 201
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 242, 277
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	2 cut(s)	148, 656
BseGI	GGATG	2 cut(s)	117, 670
BseLI	CCNNNNNNNGG	3 cut(s)	112, 242, 277
BseMI	GCAATG	2 cut(s)	148, 656
BseNI	ACTGG	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	602
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	141, 335, 597
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	116, 194
BsiEI	CGRYCG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	112, 242, 277
BsmAI	GTCTC	1 cut(s)	577
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	116, 194
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp143I	GATC	4 cut(s)	178, 232, 316, 459
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	116, 194
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	28, 387, 481
BspMI	ACCTGC	2 cut(s)	268, 714
BspPI	GGATC	2 cut(s)	227, 324
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	2 cut(s)	148, 656
BsrI	ACTGG	1 cut(s)	683
BssMI	GATC	4 cut(s)	178, 232, 316, 459
Bst6I	CTCTTC	2 cut(s)	580, 588
BstAFI	CTTAAG	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	31, 139, 159
BstF5I	GGATG	2 cut(s)	117, 670
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	4 cut(s)	181, 235, 319, 462
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	4 cut(s)	178, 232, 316, 459
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	631
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	602
BstV1I	GCAGC	3 cut(s)	141, 335, 597
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	116, 194
BtsCI	GGATG	2 cut(s)	117, 670
BtsIMutI	CAGTG	2 cut(s)	690, 699
BveI	ACCTGC	2 cut(s)	268, 714
Cac8I	GCNNGC	3 cut(s)	31, 139, 159
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	1 cut(s)	137
CviAII	CATG	4 cut(s)	89, 422, 613, 628
DpnI	GATC	4 cut(s)	180, 234, 318, 461
DpnII	GATC	4 cut(s)	178, 232, 316, 459
EaeI	YGGCCR	2 cut(s)	114, 192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	580, 588
EarI	CTCTTC	2 cut(s)	580, 588
EclXI	CGGCCG	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	662
EcoRI	GAATTC	1 cut(s)	511
EcoRV	GATATC	1 cut(s)	204
FaeI	CATG	4 cut(s)	92, 425, 616, 631
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	4 cut(s)	88, 421, 612, 627
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	155, 192, 324, 586
FokI	GGATG	2 cut(s)	104, 677
Fsp4HI	GCNGC	4 cut(s)	155, 192, 324, 586
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	4 cut(s)	155, 192, 324, 586
HaeIII	GGCC	2 cut(s)	116, 194
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	92, 425, 616, 631
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	155, 184
Hpy188I	TCNGA	1 cut(s)	695
Hpy188III	TCNNGA	5 cut(s)	40, 230, 422, 662, 714
HpyAV	CCTTC	3 cut(s)	176, 376, 399
HpyCH4V	TGCA	4 cut(s)	33, 74, 631, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
Hsp92II	CATG	4 cut(s)	92, 425, 616, 631
HspAI	GCGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	4 cut(s)	178, 232, 316, 459
LmnI	GCTCC	2 cut(s)	26, 391
LpnPI	CCDG	7 cut(s)	43, 183, 263, 462, 573, 647, 696
Lsp1109I	GCAGC	3 cut(s)	141, 335, 597
LweI	GCATC	2 cut(s)	463, 655
MaeIII	GTNAC	2 cut(s)	196, 536
MalI	GATC	4 cut(s)	180, 234, 318, 461
MboI	GATC	4 cut(s)	178, 232, 316, 459
MboII	GAAGA	5 cut(s)	57, 413, 567, 605, 609
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	602
MluCI	AATT	8 cut(s)	299, 371, 433, 455, 463, 511, 544, 637
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	3 cut(s)	53, 216, 589
MseI	TTAA	2 cut(s)	312, 528
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	709
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	4 cut(s)	178, 232, 316, 459
NlaIII	CATG	4 cut(s)	92, 425, 616, 631
NlaIV	GGNNCC	3 cut(s)	28, 387, 481
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	631
PagI	TCATGA	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	268
PctI	GAATGC	1 cut(s)	709
PkrI	GCNGC	4 cut(s)	156, 193, 325, 587
PspN4I	GGNNCC	3 cut(s)	28, 387, 481
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	312, 528
SatI	GCNGC	4 cut(s)	155, 192, 324, 586
Sau3AI	GATC	4 cut(s)	178, 232, 316, 459
SduI	GDGCHC	1 cut(s)	602
SfaNI	GCATC	2 cut(s)	463, 655
SfcI	CTRYAG	1 cut(s)	351
SmlI	CTYRAG	3 cut(s)	40, 216, 311
SmoI	CTYRAG	3 cut(s)	40, 216, 311
Sse9I	AATT	8 cut(s)	299, 371, 433, 455, 463, 511, 544, 637
SsiI	CCGC	1 cut(s)	191
TaqI	TCGA	1 cut(s)	149
TasI	AATT	8 cut(s)	299, 371, 433, 455, 463, 511, 544, 637
TauI	GCSGC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	312, 528
Tru9I	TTAA	2 cut(s)	312, 528
TscAI	CASTG	2 cut(s)	690, 706
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	154, 323, 585
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	9 cut(s)	105, 225, 410, 426, 504, 524, 566, 579, 687
TspRI	CASTG	2 cut(s)	690, 706
Vha464I	CTTAAG	1 cut(s)	311
XapI	RAATTY	4 cut(s)	371, 433, 511, 544
XceI	RCATGY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.