Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Forward (+)

21582820 .. 21583520

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACAGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTATTAGGGGTTGCATTTTTGCACCTTACTTCTGCGATGAACAAGGCGCCACCCACTTCGCGGCCATCCACAAGGTTTTCGGGGCAAGCAATGTGGCGAAATTGCTTGCTCAACTCCCCTTGAGTGATCGATGCAGAGCCGCGCTTACAATCTCATACGAAGCTCAAGCTAGGGTTCAAGATCCTATTTATGGCTGTGTTTCCCATATTTTTTCTCTCCAACAACAGGTTATCAGTTTAGAAGCACAACTAGCTTCAGTCAAGGAACAAGCAGCTAAAGGCTACTCCAGCAGTAACTTCCAAGGTTGGCATCAGTCGGAAAATTCCAACATACTGATGCCACAAAGTGTGATTAATGAATCAGTGACACCATTGTACTCCGGAAACAAGAATCCTAACTCTTTCGGGGCAAACGCAAATTTCATGATTCCAGAAGTACTTGATGACATGTACGGAGATCCTTCTAATTCCATGTGCTCATTAGACATGCAGATGAGCAATAGGTCATGGGGTTTTGATCAAGATCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

195

Amino Acids

21.28

Weight (kDa)

5.92

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AccII	CGCG	2 cut(s)	113, 194
AccIII	TCCGGA	1 cut(s)	431
AciI	CCGC	2 cut(s)	113, 192
AclWI	GGATC	2 cut(s)	227, 503
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	373, 469
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	3 cut(s)	428, 489, 503
AfiI	CCNNNNNNNGG	3 cut(s)	112, 242, 277
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	1 cut(s)	230
AluBI	AGCT	4 cut(s)	215, 221, 305, 326
AluI	AGCT	4 cut(s)	215, 221, 305, 326
Alw21I	GWGCWC	1 cut(s)	530
AlwI	GGATC	2 cut(s)	227, 503
AlwNI	CAGNNNCTG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	431
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	373, 469
AseI	ATTAAT	1 cut(s)	405
AspLEI	GCGC	2 cut(s)	101, 196
BanI	GGYRCC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	568
BfaI	CTAG	2 cut(s)	222, 302
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	3 cut(s)	114, 192, 324
BlsI	GCNGC	3 cut(s)	115, 193, 325
BmcAI	AGTACT	1 cut(s)	489
BmiI	GGNNCC	2 cut(s)	28, 100
BmsI	GCATC	3 cut(s)	173, 370, 378
BpmI	CTGGAG	1 cut(s)	322
BpuEI	CTTGAG	3 cut(s)	61, 193, 201
Bsa29I	ATCGAT	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 242, 277
Bse3DI	GCAATG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	573
BseAI	TCCGGA	1 cut(s)	431
BseCI	ATCGAT	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	3 cut(s)	112, 242, 277
BseMI	GCAATG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	335
Bsh1236I	CGCG	2 cut(s)	113, 194
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	112, 242, 277
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp13I	TCCGGA	1 cut(s)	431
Bsp143I	GATC	5 cut(s)	178, 232, 508, 568, 574
BspACI	CCGC	2 cut(s)	113, 192
BspANI	GGCC	1 cut(s)	116
BspDI	ATCGAT	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	431
BspFNI	CGCG	2 cut(s)	113, 194
BspHI	TCATGA	2 cut(s)	474, 577
BspLI	GGNNCC	2 cut(s)	28, 100
BspPI	GGATC	2 cut(s)	227, 503
BspT107I	GGYRCC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	5 cut(s)	178, 232, 508, 568, 574
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	3 cut(s)	31, 139, 159
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	2 cut(s)	113, 194
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	101, 196
BstKTI	GATC	5 cut(s)	181, 235, 511, 571, 577
BstMBI	GATC	5 cut(s)	178, 232, 508, 568, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 339
BstNSI	RCATGY	2 cut(s)	502, 541
BstUI	CGCG	2 cut(s)	113, 194
BstV1I	GCAGC	1 cut(s)	335
BstX2I	RGATCY	2 cut(s)	232, 508
BstYI	RGATCY	2 cut(s)	232, 508
Bsu15I	ATCGAT	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	3 cut(s)	31, 139, 159
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	2 cut(s)	474, 577
CfoI	GCGC	2 cut(s)	101, 196
ClaI	ATCGAT	1 cut(s)	181
Csp6I	GTAC	3 cut(s)	427, 488, 502
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviAII	CATG	6 cut(s)	475, 499, 523, 538, 558, 578
CviJI	RGCY	9 cut(s)	29, 116, 191, 215, 221, 246, 305, 326, 333
CviKI_1	RGCY	9 cut(s)	29, 116, 191, 215, 221, 246, 305, 326, 333
CviQI	GTAC	3 cut(s)	427, 488, 502
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	5 cut(s)	180, 234, 510, 570, 576
DpnII	GATC	5 cut(s)	178, 232, 508, 568, 574
DraIII	CACNNNGTG	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	352
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	6 cut(s)	478, 502, 526, 541, 561, 581
FatI	CATG	6 cut(s)	474, 498, 522, 537, 557, 577
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	3 cut(s)	114, 192, 324
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	114, 192, 324
FspBI	CTAG	2 cut(s)	222, 302
GlaI	GCGC	2 cut(s)	100, 195
GluI	GCNGC	3 cut(s)	114, 192, 324
GsuI	CTGGAG	1 cut(s)	322
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	432
HhaI	GCGC	2 cut(s)	101, 196
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	6 cut(s)	478, 502, 526, 541, 561, 581
Hin6I	GCGC	2 cut(s)	99, 194
HinP1I	GCGC	2 cut(s)	99, 194
HinfI	GANTC	3 cut(s)	410, 442, 478
HpaII	CCGG	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	7 cut(s)	40, 230, 432, 475, 482, 572, 578
HpyAV	CCTTC	1 cut(s)	522
HpyCH4V	TGCA	5 cut(s)	33, 66, 74, 186, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 339
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	478, 502, 526, 541, 561, 581
HspAI	GCGC	2 cut(s)	99, 194
KasI	GGCGCC	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	178, 232, 508, 568, 574
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	5 cut(s)	43, 263, 352, 445, 495
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	3 cut(s)	173, 370, 378
MaeI	CTAG	2 cut(s)	222, 302
MaeIII	GTNAC	2 cut(s)	344, 415
MalI	GATC	5 cut(s)	180, 234, 510, 570, 576
MboI	GATC	5 cut(s)	178, 232, 508, 568, 574
MboII	GAAGA	1 cut(s)	57
MflI	RGATCY	2 cut(s)	232, 508
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	4 cut(s)	152, 373, 469, 517
Mly113I	GGCGCC	1 cut(s)	99
MmeI	TCCRAC	3 cut(s)	295, 348, 402
MroI	TCCGGA	1 cut(s)	431
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	386, 542
MspI	CCGG	1 cut(s)	432
MvnI	CGCG	2 cut(s)	113, 194
MwoI	GCNNNNNNNGC	2 cut(s)	302, 339
NarI	GGCGCC	1 cut(s)	99
NdeII	GATC	5 cut(s)	178, 232, 508, 568, 574
NlaIII	CATG	6 cut(s)	478, 502, 526, 541, 561, 581
NlaIV	GGNNCC	2 cut(s)	28, 100
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	2 cut(s)	502, 541
PagI	TCATGA	2 cut(s)	474, 577
PciI	ACATGT	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	410, 442, 478
PkrI	GCNGC	3 cut(s)	115, 193, 325
PluTI	GGCGCC	1 cut(s)	102
PscI	ACATGT	1 cut(s)	498
PshBI	ATTAAT	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	28, 100
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	232, 508
RsaI	GTAC	3 cut(s)	428, 489, 503
RsaNI	GTAC	3 cut(s)	427, 488, 502
RseI	CAYNNNNRTG	2 cut(s)	386, 542
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	114, 192, 324
Sau3AI	GATC	5 cut(s)	178, 232, 508, 568, 574
ScaI	AGTACT	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	530
SfaNI	GCATC	3 cut(s)	173, 370, 378
SfoI	GGCGCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	386, 542
SmlI	CTYRAG	3 cut(s)	40, 172, 216
SmoI	CTYRAG	3 cut(s)	40, 172, 216
Sse9I	AATT	4 cut(s)	152, 373, 469, 517
SsiI	CCGC	2 cut(s)	113, 192
SspDI	GGCGCC	1 cut(s)	98
SspMI	CTAG	2 cut(s)	222, 302
StyI	CCWWGG	1 cut(s)	352
TaqI	TCGA	1 cut(s)	181
TasI	AATT	4 cut(s)	152, 373, 469, 517
TatI	WGTACW	2 cut(s)	426, 487
TauI	GCSGC	2 cut(s)	116, 194
TfiI	GAWTC	3 cut(s)	410, 442, 478
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	105, 423, 463
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	1 cut(s)	420
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	2 cut(s)	373, 469
XceI	RCATGY	2 cut(s)	502, 541
XspI	CTAG	2 cut(s)	222, 302
ZrmI	AGTACT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.