Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Reverse (-)

21548484 .. 21549572

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGACTAGTTCCAGCTCTAGCTCTGGCTCTCCTTGTGGTGCTTGTAAGTTCCTTAGGAGGAAATGTGCAAAGGGATGTGTGTTTGCTCCATACTTTTGTCATGAACAAGGAGCTTCACACTTTGCAGCCATTCACAAGGTCTTTGGAGCTAGCAATGCTTCTAAGTTGCTCTCTCATCTTCCCATTAGCGATCGCTGTGAAGCCGCTATTACAATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCCATCTATGGCTGTGTTTCTCATATCTTTGCTCTCCAACAACAGGTTGTGAATTTACAAGCAGAACTTGAGATTCTAAAGCAACAAGCAGCACAAAGCATGATTTTTGCTGATTCACCAACATCAGAAAACCCTAATAGTTACTATGGAGACACTACTAAGGCTCCTTATCATCATGATCATCAAAATATTTATCATCATCATGATCAGACCCATTTGGTTTACCAAACTGGAAGTTCTGGGACGGTTCAACACGGGGATGCCACAGAGAGTAGTTACCACAACGAAACCTCCTCAGGCATGGGGGAATTCTCCATCTACTCTGACTTGGAACAACACCTGAACACTTTCAATCAGGATCATCTCAAAGAGCTTCAATCAGCAAATTTTGGCTACATCTCCTTCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

218

Amino Acids

24.06

Weight (kDa)

6.01

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	11 - 109	5.4e-34	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	239, 612
AcsI	RAATTY	3 cut(s)	298, 554, 631
AfiI	CCNNNNNNNGG	2 cut(s)	254, 289
AgsI	TTSAA	4 cut(s)	242, 497, 598, 623
AhlI	ACTAGT	1 cut(s)	5
AluBI	AGCT	7 cut(s)	15, 21, 113, 149, 227, 233, 619
AluI	AGCT	7 cut(s)	15, 21, 113, 149, 227, 233, 619
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	239, 612
ApeKI	GCWGC	2 cut(s)	125, 335
ApoI	RAATTY	3 cut(s)	298, 554, 631
AsiSI	GCGATCGC	1 cut(s)	193
Asp700I	GAANNNNTTC	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	354
AsuNHI	GCTAGC	1 cut(s)	149
AxyI	CCTNAGG	2 cut(s)	53, 541
BauI	CACGAG	1 cut(s)	652
BbvI	GCAGC	2 cut(s)	137, 347
BccI	CCATC	2 cut(s)	257, 569
BclI	TGATCA	2 cut(s)	424, 451
BcoDI	GTCTC	1 cut(s)	390
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	4 cut(s)	6, 18, 150, 234
BisI	GCNGC	3 cut(s)	126, 204, 336
BlsI	GCNGC	3 cut(s)	127, 205, 337
BmiI	GGNNCC	1 cut(s)	411
BmsI	GCATC	1 cut(s)	496
BmtI	GCTAGC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	213, 335
BsaXI	ACNNNNNCTCC	6 cut(s)	49, 79, 394, 424, 521, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 289
Bse1I	ACTGG	1 cut(s)	481
Bse21I	CCTNAGG	2 cut(s)	53, 541
Bse3DI	GCAATG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	80, 511
BseLI	CCNNNNNNNGG	2 cut(s)	254, 289
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	529
BseXI	GCAGC	2 cut(s)	137, 347
Bsh1285I	CGRYCG	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	2 cut(s)	254, 289
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	502
Bsp143I	GATC	5 cut(s)	190, 244, 424, 451, 604
BspACI	CCGC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	554
BspHI	TCATGA	3 cut(s)	100, 421, 448
BspLI	GGNNCC	1 cut(s)	411
BspOI	GCTAGC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	239, 612
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	481
BssMI	GATC	5 cut(s)	190, 244, 424, 451, 604
BssSI	CACGAG	1 cut(s)	652
Bst2BI	CACGAG	1 cut(s)	652
Bst4CI	ACNGT	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	4 cut(s)	53, 162, 405, 541
BstF5I	GGATG	2 cut(s)	80, 511
BstKTI	GATC	5 cut(s)	193, 247, 427, 454, 607
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	5 cut(s)	190, 244, 424, 451, 604
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	137, 347
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu36I	CCTNAGG	2 cut(s)	53, 541
BtsCI	GGATG	2 cut(s)	80, 511
Cac8I	GCNNGC	1 cut(s)	151
CciI	TCATGA	3 cut(s)	100, 421, 448
CviAII	CATG	5 cut(s)	101, 346, 422, 449, 547
DdeI	CTNAG	4 cut(s)	53, 162, 405, 541
DpnI	GATC	5 cut(s)	192, 246, 426, 453, 606
DpnII	GATC	5 cut(s)	190, 244, 424, 451, 604
Eco81I	CCTNAGG	2 cut(s)	53, 541
EcoRI	GAATTC	1 cut(s)	554
FaeI	CATG	5 cut(s)	104, 349, 425, 452, 550
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 297, 329
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	5 cut(s)	100, 345, 421, 448, 546
FbaI	TGATCA	2 cut(s)	424, 451
Fnu4HI	GCNGC	3 cut(s)	126, 204, 336
FokI	GGATG	2 cut(s)	87, 518
Fsp4HI	GCNGC	3 cut(s)	126, 204, 336
FspBI	CTAG	4 cut(s)	6, 18, 150, 234
GluI	GCNGC	3 cut(s)	126, 204, 336
Hin1II	CATG	5 cut(s)	104, 349, 425, 452, 550
HinfI	GANTC	2 cut(s)	319, 359
HphI	GGTGA	1 cut(s)	354
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	3 cut(s)	373, 456, 571
Hpy188III	TCNNGA	6 cut(s)	101, 242, 422, 449, 602, 654
Hpy8I	GTNNAC	1 cut(s)	469
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	2 cut(s)	68, 125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	4 cut(s)	53, 162, 405, 541
Hsp92II	CATG	5 cut(s)	104, 349, 425, 452, 550
Ksp22I	TGATCA	2 cut(s)	424, 451
Kzo9I	GATC	5 cut(s)	190, 244, 424, 451, 604
LmnI	GCTCC	4 cut(s)	91, 110, 146, 415
LpnPI	CCDG	8 cut(s)	9, 25, 275, 462, 471, 528, 587, 599
Lsp1109I	GCAGC	2 cut(s)	137, 347
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	4 cut(s)	6, 18, 150, 234
MaeIII	GTNAC	2 cut(s)	386, 521
MalI	GATC	5 cut(s)	192, 246, 426, 453, 606
MboI	GATC	5 cut(s)	190, 244, 424, 451, 604
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	3 cut(s)	298, 554, 631
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	3 cut(s)	51, 547, 550
MroXI	GAANNNNTTC	1 cut(s)	593
MslI	CAYNNNNRTG	2 cut(s)	447, 504
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	5 cut(s)	190, 244, 424, 451, 604
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	5 cut(s)	104, 349, 425, 452, 550
NlaIV	GGNNCC	1 cut(s)	411
PagI	TCATGA	3 cut(s)	100, 421, 448
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	319, 359
PkrI	GCNGC	3 cut(s)	127, 205, 337
Ple19I	CGATCG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	244
PvuI	CGATCG	1 cut(s)	193
RgaI	GCGATCGC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	447, 504
SatI	GCNGC	3 cut(s)	126, 204, 336
Sau3AI	GATC	5 cut(s)	190, 244, 424, 451, 604
SfaAI	GCGATCGC	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	496
SgfI	GCGATCGC	1 cut(s)	193
SmiMI	CAYNNNNRTG	2 cut(s)	447, 504
SmlI	CTYRAG	2 cut(s)	228, 314
SmoI	CTYRAG	2 cut(s)	228, 314
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	3 cut(s)	298, 554, 631
SsiI	CCGC	1 cut(s)	204
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	4 cut(s)	6, 18, 150, 234
TaaI	ACNGT	1 cut(s)	493
TasI	AATT	3 cut(s)	298, 554, 631
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	319, 359
TseI	GCWGC	2 cut(s)	125, 335
TspDTI	ATGAA	2 cut(s)	117, 237
XapI	RAATTY	3 cut(s)	298, 554, 631
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	4 cut(s)	6, 18, 150, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.