Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Forward (+)

20376706 .. 20377659

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G227300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACAGGTTCTGGTTCTCCTTGTGGAGCTTGCAAGTTCTTGAGAAGAAAATGTATTAGAGGTTGCATTTTTGCACCTTATTTCTGCCATGAACAGGGTGCCACTCATTTCGCCGCGATCCACAAGGTTTTTGGGGCAAGCAACGTGTCGAAATTGCTTGCTCAACTTCCGGTGAGCGATCGATGCAGAGCTGCACTCACAATTTCATATGAAGCTCAAGCCAGGGTTCAAGACCCTATTTATGGCTGTGTTTCCCATATTTTTGCTCTCCAGCAGCAGGTTATTAGTTTACAAGCACAACTAGCTTCTGTCAAGGAACAAGCAGCTAAAGGCTTTTCCAATGCGAACCCAATTGAGAAGTACAATATGAATGTGCAGAGTTGGCCTCAGTCGGAAAGTTCAAACATATTGATGCCACAAAGTATGAACCTCAACAACATTAATGATTCAATGCTGCCATTTTACTCCGAAAACAAGAATTCGAATTCTTTTGAGGGTGACCGAAATTTCATGATTCCGGAAGTACTAAATGACATGTACGGCAGCTATGGAGATGGAGAGGCTTCTAATTCAATGTCCTCACTAGACATGCAGATGAGCAATATGCAATGGGGTTTCGATCAAGATCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

212

Amino Acids

23.4

Weight (kDa)

5.54

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	98
AccII	CGCG	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	3 cut(s)	478, 484, 505
AfaI	GTAC	3 cut(s)	362, 525, 539
AfiI	CCNNNNNNNGG	3 cut(s)	94, 242, 277
AflIII	ACRYGT	2 cut(s)	144, 534
AgsI	TTSAA	4 cut(s)	230, 402, 450, 573
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	6 cut(s)	29, 191, 215, 305, 326, 546
AluI	AGCT	6 cut(s)	29, 191, 215, 305, 326, 546
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	5 cut(s)	191, 274, 323, 454, 543
ApoI	RAATTY	3 cut(s)	478, 484, 505
AseI	ATTAAT	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	184, 509
AsuII	TTCGAA	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	98
BbvI	GCAGC	5 cut(s)	178, 286, 335, 441, 555
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	556
BciT130I	CCWGG	1 cut(s)	223
BfaI	CTAG	2 cut(s)	302, 584
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	6 cut(s)	114, 192, 275, 324, 455, 544
BlsI	GCNGC	6 cut(s)	115, 193, 276, 325, 456, 545
BmcAI	AGTACT	1 cut(s)	525
Bme1390I	CCNGG	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	173, 402
BplI	GAGNNNNNCTC	4 cut(s)	180, 212, 370, 402
BpmI	CTGGAG	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	482
BpuEI	CTTGAG	2 cut(s)	61, 201
Bsa29I	ATCGAT	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	2 cut(s)	169, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 242, 277
Bse3DI	GCAATG	1 cut(s)	614
Bse8I	GATNNNNATC	1 cut(s)	624
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	3 cut(s)	94, 242, 277
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	1 cut(s)	401
BseXI	GCAGC	5 cut(s)	178, 286, 335, 441, 555
BsgI	GTGCAG	2 cut(s)	177, 395
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	385
BshNI	GGYRCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	170, 518
BslI	CCNNNNNNNGG	3 cut(s)	94, 242, 277
BsnI	GGCC	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	482
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	4 cut(s)	117, 178, 619, 625
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	112
BspT104I	TTCGAA	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	614
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	117, 178, 619, 625
Bst2UI	CCWGG	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	482
BstC8I	GCNNGC	3 cut(s)	31, 139, 159
BstDEI	CTNAG	1 cut(s)	387
BstEII	GGTNACC	1 cut(s)	497
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	4 cut(s)	120, 181, 622, 628
BstMBI	GATC	4 cut(s)	117, 178, 619, 625
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 302, 382
BstNI	CCWGG	1 cut(s)	223
BstNSI	RCATGY	2 cut(s)	538, 592
BstPI	GGTNACC	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	5 cut(s)	178, 286, 335, 441, 555
Bsu15I	ATCGAT	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	385
BsuTUI	ATCGAT	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	31, 139, 159
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	510
ClaI	ATCGAT	1 cut(s)	181
Csp6I	GTAC	3 cut(s)	361, 524, 538
CviAII	CATG	4 cut(s)	89, 511, 535, 589
CviQI	GTAC	3 cut(s)	361, 524, 538
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	4 cut(s)	119, 180, 621, 627
DpnII	GATC	4 cut(s)	117, 178, 619, 625
Eco91I	GGTNACC	1 cut(s)	497
EcoO65I	GGTNACC	1 cut(s)	497
EcoRI	GAATTC	2 cut(s)	478, 484
EcoRII	CCWGG	1 cut(s)	221
FaeI	CATG	4 cut(s)	92, 514, 538, 592
FatI	CATG	4 cut(s)	88, 510, 534, 588
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	6 cut(s)	114, 192, 275, 324, 455, 544
Fsp4HI	GCNGC	6 cut(s)	114, 192, 275, 324, 455, 544
FspBI	CTAG	2 cut(s)	302, 584
GluI	GCNGC	6 cut(s)	114, 192, 275, 324, 455, 544
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	2 cut(s)	170, 518
Hin1II	CATG	4 cut(s)	92, 514, 538, 592
HinfI	GANTC	2 cut(s)	446, 514
HpaII	CCGG	2 cut(s)	170, 518
HphI	GGTGA	2 cut(s)	184, 509
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	394, 469
Hpy188III	TCNNGA	6 cut(s)	40, 230, 511, 518, 623, 629
Hpy8I	GTNNAC	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	8 cut(s)	33, 66, 74, 186, 194, 376, 592, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 302, 382
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	92, 514, 538, 592
Kpn2I	TCCGGA	1 cut(s)	517
Kzo9I	GATC	4 cut(s)	117, 178, 619, 625
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	8 cut(s)	80, 183, 208, 235, 263, 284, 531, 614
Lsp1109I	GCAGC	5 cut(s)	178, 286, 335, 441, 555
LweI	GCATC	2 cut(s)	173, 402
MaeI	CTAG	2 cut(s)	302, 584
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	4 cut(s)	119, 180, 621, 627
MboI	GATC	4 cut(s)	117, 178, 619, 625
MboII	GAAGA	1 cut(s)	57
MfeI	CAATTG	1 cut(s)	351
MluCI	AATT	7 cut(s)	152, 201, 351, 478, 484, 505, 568
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	53, 396, 440, 487, 553, 589
MroI	TCCGGA	1 cut(s)	517
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	2 cut(s)	410, 593
MspI	CCGG	2 cut(s)	170, 518
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	183, 302, 382
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	4 cut(s)	117, 178, 619, 625
NlaIII	CATG	4 cut(s)	92, 514, 538, 592
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	2 cut(s)	538, 592
NspV	TTCGAA	1 cut(s)	482
PagI	TCATGA	1 cut(s)	510
PciI	ACATGT	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	446, 514
PkrI	GCNGC	6 cut(s)	115, 193, 276, 325, 456, 545
Ple19I	CGATCG	1 cut(s)	181
PscI	ACATGT	1 cut(s)	534
PshBI	ATTAAT	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	221
PspEI	GGTNACC	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	3 cut(s)	362, 525, 539
RsaNI	GTAC	3 cut(s)	361, 524, 538
RseI	CAYNNNNRTG	2 cut(s)	410, 593
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	6 cut(s)	114, 192, 275, 324, 455, 544
Sau3AI	GATC	4 cut(s)	117, 178, 619, 625
ScaI	AGTACT	1 cut(s)	525
ScrFI	CCNGG	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	173, 402
SfuI	TTCGAA	1 cut(s)	482
SmiMI	CAYNNNNRTG	2 cut(s)	410, 593
SmlI	CTYRAG	2 cut(s)	40, 216
SmoI	CTYRAG	2 cut(s)	40, 216
Sse9I	AATT	7 cut(s)	152, 201, 351, 478, 484, 505, 568
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	302, 584
StyD4I	CCNGG	1 cut(s)	221
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	4 cut(s)	149, 181, 482, 618
TaqII	GACCGA	1 cut(s)	516
TasI	AATT	7 cut(s)	152, 201, 351, 478, 484, 505, 568
TatI	WGTACW	2 cut(s)	360, 523
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	446, 514
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	5 cut(s)	191, 274, 323, 454, 543
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	6 cut(s)	105, 195, 225, 383, 440, 499
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	3 cut(s)	478, 484, 505
XceI	RCATGY	2 cut(s)	538, 592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XspI	CTAG	2 cut(s)	302, 584
ZrmI	AGTACT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.