Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Forward (+)

51973777 .. 51974714

Gene Structure 938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25912

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATCACCTCCACTCTTCCCCTAGTGTTTATATACATGGTGAAAAGAATGCTAGCTGCGAACAAGTATCTTCAGCTAAGAGAGAGCAGAAACCACACAAAAACTCCCCCAATTAACCAAGAGATCCTCATCAAGATCATGACTGGCTCTGGTTCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTGAGGGGTTGTATTTTTGCACCTTATTTCTGCCATGAAAATGGCGCTACCCATTTTGCTGCCATCCATAAGGTTTTCGGCGCAAGCAATGTGTCGAAGCTGCTGGCTCACCTTCCGGTGAGTGATCGTTGTGAAGCTGCAGTGACTATCTCATATGAAGCTCAGGCCAGGCTCCAAGATCCCATATATGGCTGTGTTTCACATATTTTTGCTCTCCAACAACAGGTTGTCAACCTCCAGGCACAATTAGCTTCCCTCAAGGATCAAGCATCTCAAAGCTTTGTGAATGGCTCTGCAGCTGTAGCAAACCCTAACGAGAATTGGTTTCCTGATTTAGAGAATTCATCTAACTCAGTGCCCCAAGTCAATTCAAATTACCATATCAATAATGGTGGAACAACATCATACTATGAGAACGGAATTATGAGTTCAAACTCCATTGGGAGTAGTAATAATGATCAAAACTCAGGAATCCGGGATGAAAATGCGTCCTATGGAAGCTTTGAAGAGGTGTCTCCTTCCCTGTCTTCTTTCAACATGCAAATGAATAACAGGCAATATTGGGGTAATTATGATCGGGACGTGGATGAGCTTCAATCTATGGCTTTCAGCTATGTTGATCAGCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

274

Amino Acids

30.39

Weight (kDa)

6.44

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	53 - 151	5.8e-35	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	118, 365, 462
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	380, 415
AgsI	TTSAA	5 cut(s)	564, 624, 698, 727, 788
AjiI	CACGTC	1 cut(s)	775
AjnI	CCWGG	2 cut(s)	359, 429
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	3 cut(s)	118, 365, 462
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	5 cut(s)	56, 251, 292, 329, 488
ApoI	RAATTY	1 cut(s)	532
AspLEI	GCGC	2 cut(s)	239, 275
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	3 cut(s)	52, 293, 322
AsuNHI	GCTAGC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	711
BbvI	GCAGC	5 cut(s)	43, 238, 279, 316, 500
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	2 cut(s)	361, 431
BclI	TGATCA	3 cut(s)	3, 649, 811
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	2 cut(s)	23, 53
BfmI	CTRYAG	3 cut(s)	330, 486, 492
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	5 cut(s)	57, 252, 293, 330, 489
BlsI	GCNGC	5 cut(s)	58, 253, 294, 331, 490
Bme1390I	CCNGG	3 cut(s)	361, 431, 668
BmgBI	CACGTC	1 cut(s)	775
BmiI	GGNNCC	2 cut(s)	166, 365
BmrFI	CCNGG	3 cut(s)	361, 431, 668
BmsI	GCATC	1 cut(s)	470
BmtI	GCTAGC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	711
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	199, 434
BpuMI	CCSGG	1 cut(s)	668
BsaBI	GATNNNNATC	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 415
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	361, 431
BseGI	GGATG	3 cut(s)	255, 676, 784
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	2 cut(s)	380, 415
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	3 cut(s)	368, 558, 672
BseNI	ACTGG	1 cut(s)	148
BseSI	GKGCMC	1 cut(s)	552
BseXI	GCAGC	5 cut(s)	43, 238, 279, 316, 500
BshFI	GGCC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	308, 667
BslFI	GGGAC	1 cut(s)	785
BslI	CCNNNNNNNGG	2 cut(s)	380, 415
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	1 cut(s)	785
BsmI	GAATGC	2 cut(s)	54, 817
BsnI	GGCC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	9 cut(s)	3, 123, 135, 316, 370, 454, 649, 766, 811
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	3 cut(s)	367, 557, 671
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	166, 365
BspMAI	CTGCAG	2 cut(s)	334, 490
BspOI	GCTAGC	1 cut(s)	56
BspPI	GGATC	3 cut(s)	118, 365, 462
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	9 cut(s)	3, 123, 135, 316, 370, 454, 649, 766, 811
Bst2UI	CCWGG	2 cut(s)	361, 431
Bst6I	CTCTTC	2 cut(s)	21, 693
BstC8I	GCNNGC	4 cut(s)	54, 169, 277, 297
BstDEI	CTNAG	4 cut(s)	77, 354, 544, 658
BstF5I	GGATG	3 cut(s)	255, 676, 784
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	239, 275
BstKTI	GATC	9 cut(s)	6, 126, 138, 319, 373, 457, 652, 769, 814
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	9 cut(s)	3, 123, 135, 316, 370, 454, 649, 766, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 494
BstNI	CCWGG	2 cut(s)	361, 431
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	3 cut(s)	359, 429, 666
BstSFI	CTRYAG	3 cut(s)	330, 486, 492
BstSLI	GKGCMC	1 cut(s)	552
BstV1I	GCAGC	5 cut(s)	43, 238, 279, 316, 500
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	2 cut(s)	123, 370
BstXI	CCANNNNNNTGG	1 cut(s)	233
BstYI	RGATCY	2 cut(s)	123, 370
BsuRI	GGCC	1 cut(s)	359
BtrI	CACGTC	1 cut(s)	775
BtsCI	GGATG	3 cut(s)	255, 676, 784
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	339, 552
Cac8I	GCNNGC	4 cut(s)	54, 169, 277, 297
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	2 cut(s)	239, 275
CseI	GACGC	1 cut(s)	669
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	4 cut(s)	37, 139, 227, 730
DdeI	CTNAG	4 cut(s)	77, 354, 544, 658
DpnI	GATC	9 cut(s)	5, 125, 137, 318, 372, 456, 651, 768, 813
DpnII	GATC	9 cut(s)	3, 123, 135, 316, 370, 454, 649, 766, 811
Eam1104I	CTCTTC	2 cut(s)	21, 693
EarI	CTCTTC	2 cut(s)	21, 693
Eco57I	CTGAAG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	359, 429
FaeI	CATG	4 cut(s)	40, 142, 230, 733
FaqI	GGGAC	1 cut(s)	785
FatI	CATG	4 cut(s)	36, 138, 226, 729
FauNDI	CATATG	1 cut(s)	346
FbaI	TGATCA	3 cut(s)	3, 649, 811
Fnu4HI	GCNGC	5 cut(s)	57, 252, 293, 330, 489
FokI	GGATG	3 cut(s)	242, 683, 791
Fsp4HI	GCNGC	5 cut(s)	57, 252, 293, 330, 489
FspBI	CTAG	2 cut(s)	23, 53
GlaI	GCGC	2 cut(s)	238, 274
GluI	GCNGC	5 cut(s)	57, 252, 293, 330, 489
GsuI	CTGGAG	1 cut(s)	413
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	308, 667
HgaI	GACGC	1 cut(s)	669
HhaI	GCGC	2 cut(s)	239, 275
Hin1II	CATG	4 cut(s)	40, 142, 230, 733
Hin6I	GCGC	2 cut(s)	237, 273
HinP1I	GCGC	2 cut(s)	237, 273
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	2 cut(s)	469, 691
HinfI	GANTC	1 cut(s)	663
HpaII	CCGG	2 cut(s)	308, 667
HphI	GGTGA	3 cut(s)	52, 293, 322
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188III	TCNNGA	7 cut(s)	133, 139, 178, 521, 660, 770, 822
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	314, 720
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	5 cut(s)	171, 212, 332, 488, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 494
HpyF3I	CTNAG	4 cut(s)	77, 354, 544, 658
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	4 cut(s)	40, 142, 230, 733
HspAI	GCGC	2 cut(s)	237, 273
Ksp22I	TGATCA	3 cut(s)	3, 649, 811
Kzo9I	GATC	9 cut(s)	3, 123, 135, 316, 370, 454, 649, 766, 811
LmnI	GCTCC	2 cut(s)	164, 369
Lsp1109I	GCAGC	5 cut(s)	43, 238, 279, 316, 500
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	2 cut(s)	23, 53
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	9 cut(s)	5, 125, 137, 318, 372, 456, 651, 768, 813
MboI	GATC	9 cut(s)	3, 123, 135, 316, 370, 454, 649, 766, 811
MboII	GAAGA	5 cut(s)	8, 62, 195, 710, 711
MflI	RGATCY	2 cut(s)	123, 370
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	8 cut(s)	111, 437, 511, 532, 559, 565, 612, 760
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	6 cut(s)	19, 137, 189, 437, 458, 694
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	2 cut(s)	231, 734
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	2 cut(s)	308, 667
MspR9I	CCNGG	3 cut(s)	361, 431, 668
Mva1269I	GAATGC	2 cut(s)	54, 817
MvaI	CCWGG	2 cut(s)	361, 431
MwoI	GCNNNNNNNGC	2 cut(s)	440, 494
NciI	CCSGG	1 cut(s)	668
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	9 cut(s)	3, 123, 135, 316, 370, 454, 649, 766, 811
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	4 cut(s)	40, 142, 230, 733
NlaIV	GGNNCC	2 cut(s)	166, 365
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	733
PagI	TCATGA	1 cut(s)	138
PctI	GAATGC	2 cut(s)	54, 817
PfeI	GAWTC	1 cut(s)	663
PfoI	TCCNGGA	1 cut(s)	666
PkrI	GCNGC	5 cut(s)	58, 253, 294, 331, 490
Psp6I	CCWGG	2 cut(s)	359, 429
PspGI	CCWGG	2 cut(s)	359, 429
PspN4I	GGNNCC	2 cut(s)	166, 365
PstI	CTGCAG	2 cut(s)	334, 490
PsuI	RGATCY	2 cut(s)	123, 370
PvuII	CAGCTG	1 cut(s)	491
RseI	CAYNNNNRTG	2 cut(s)	231, 734
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	5 cut(s)	57, 252, 293, 330, 489
Sau3AI	GATC	9 cut(s)	3, 123, 135, 316, 370, 454, 649, 766, 811
ScrFI	CCNGG	3 cut(s)	361, 431, 668
SduI	GDGCHC	1 cut(s)	552
SfaNI	GCATC	1 cut(s)	470
SfcI	CTRYAG	3 cut(s)	330, 486, 492
SmiMI	CAYNNNNRTG	2 cut(s)	231, 734
SmlI	CTYRAG	2 cut(s)	178, 449
SmoI	CTYRAG	2 cut(s)	178, 449
Sse9I	AATT	8 cut(s)	111, 437, 511, 532, 559, 565, 612, 760
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	2 cut(s)	23, 53
StyD4I	CCNGG	3 cut(s)	359, 429, 666
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	1 cut(s)	287
TasI	AATT	8 cut(s)	111, 437, 511, 532, 559, 565, 612, 760
TfiI	GAWTC	1 cut(s)	663
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	339, 552
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	5 cut(s)	56, 251, 292, 329, 488
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	5 cut(s)	243, 363, 525, 687, 752
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	2 cut(s)	339, 552
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XspI	CTAG	2 cut(s)	23, 53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.