Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004582

Physical Location & Seq

Genomic Coordinates Forward (+)

54546632 .. 54547287

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG315600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCAGGGTCTGCTGGTTCTCCTTGTGGAGCCTGCAAGTTCCTGAGAAGAAAATGTGCCAGGGGTTGCATTTTTGCACCTTATTTCTGCCATGAACAAGGTGCTACACATTTTGCAGCCATCCACAAGGTATTCGGAGCAAGCAATGTGTCGAAATTGCTTGCTCAACTCCCCATTAATGATCGTTGTAGAGCTGCGCTTACAATTTCGTATGAAGCTCAAGCCAGGGTTCAAGATCCTGTTTATGGCTGTGTTTCCCATATTTTTGCTCTCCAACAACAGGTTATTAATCTACAGGCACAAATAGCTTCAGCCAAGGAACAAGCAGCTAAAAGCAATTCCACTGGCTCTGACAATTCAATGAACCCAAGTTGGCTTCAGTACTCGGAGAATTTAAACATGACGAATCAGCAACATCCCATCTCTTTCGGGAATGACGAAAATTTCATGGTTCCAGAAGTACTAAATGACATATATGGAAGCTTTGGGGAGTCTGCTAATTCCATGAGCTCATTAGATCACATGCAAACAAACAGTATGCAGTGGAGTTTCGATCAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

187

Amino Acids

20.47

Weight (kDa)

6.27

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	8 - 106	1.1e-34	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58190
fragaria_vesca	FvH4_2g21940 FvH4_2g21950
malus_domestica	MD05G1200700.v1.1 MD05G1200800.v1.1 MD10G1187300.v1.1 MD10G1187600.v1.1
prunus_persica	Prupe.8G227300_v2.0.a1 Prupe.8G227400_v2.0.a1
pyrus_communis	pycom05g18750 pycom10g16200
rosa_chinensis	RchiOBHm_Chr6g0288831 RchiOBHm_Chr6g0288841
rosa_laevigata	RLG00000012363 RLG00000012364
rosa_multiflora	Rmu_sc0005314.1_g000015 Rmu_sc0005314.1_g000018
rosa_roxburghii	Rroxscaffold_7G00179850 Rroxscaffold_7G00179860
rosa_rugosa	Rorug06G0198400 Rorug06G0198500
rosa_samantha	Rh6AG309700 Rh6AG309800 Rh6BG315600 Rh6BG315700 Rh6CG323100 Rh6CG323200 Rh6DG308800 Rh6DG308900
rosa_wichuraiana	Rw6G026770 Rw6G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	391, 442
AcuI	CTGAAG	2 cut(s)	294, 362
AfaI	GTAC	2 cut(s)	383, 462
AfiI	CCNNNNNNNGG	2 cut(s)	245, 280
AgsI	TTSAA	2 cut(s)	233, 360
AjnI	CCWGG	2 cut(s)	59, 224
AluBI	AGCT	6 cut(s)	194, 218, 308, 329, 483, 510
AluI	AGCT	6 cut(s)	194, 218, 308, 329, 483, 510
Alw21I	GWGCWC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	11
ApeKI	GCWGC	3 cut(s)	116, 194, 326
ApoI	RAATTY	2 cut(s)	391, 442
AseI	ATTAAT	2 cut(s)	177, 288
AspLEI	GCGC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	3 cut(s)	128, 181, 338
BccI	CCATC	2 cut(s)	128, 428
BciT130I	CCWGG	2 cut(s)	61, 226
BfmI	CTRYAG	1 cut(s)	293
BisI	GCNGC	3 cut(s)	117, 195, 327
BlsI	GCNGC	3 cut(s)	118, 196, 328
BmcAI	AGTACT	2 cut(s)	383, 462
Bme1390I	CCNGG	2 cut(s)	61, 226
BmiI	GGNNCC	2 cut(s)	31, 453
BmrFI	CCNGG	2 cut(s)	61, 226
BpuEI	CTTGAG	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	60, 225, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 280
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	2 cut(s)	61, 226
BseDI	CCNNGG	3 cut(s)	60, 225, 315
BseGI	GGATG	2 cut(s)	120, 415
BseLI	CCNNNNNNNGG	2 cut(s)	245, 280
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	3 cut(s)	128, 181, 338
BsiHKAI	GWGCWC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	245, 280
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp143I	GATC	4 cut(s)	181, 235, 517, 553
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	31, 453
BspPI	GGATC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	60, 225, 315
BssMI	GATC	4 cut(s)	181, 235, 517, 553
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	61, 226
Bst4CI	ACNGT	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	34, 142, 162
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	120, 415
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	184, 238, 520, 556
BstMBI	GATC	4 cut(s)	181, 235, 517, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 305
BstNI	CCWGG	2 cut(s)	61, 226
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	59, 224
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	3 cut(s)	128, 181, 338
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	120, 415
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	2 cut(s)	342, 548
Cac8I	GCNNGC	3 cut(s)	34, 142, 162
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	382, 461
CviAII	CATG	5 cut(s)	92, 400, 448, 505, 523
CviQI	GTAC	2 cut(s)	382, 461
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	4 cut(s)	183, 237, 519, 555
DpnII	GATC	4 cut(s)	181, 235, 517, 553
DraI	TTTAAA	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	512
Eco53kI	GAGCTC	1 cut(s)	510
Eco57I	CTGAAG	2 cut(s)	294, 362
EcoICRI	GAGCTC	1 cut(s)	510
EcoRII	CCWGG	2 cut(s)	59, 224
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	5 cut(s)	95, 403, 451, 508, 526
FatI	CATG	5 cut(s)	91, 399, 447, 504, 522
Fnu4HI	GCNGC	3 cut(s)	117, 195, 327
FokI	GGATG	2 cut(s)	107, 402
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	3 cut(s)	117, 195, 327
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	3 cut(s)	117, 195, 327
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	5 cut(s)	95, 403, 451, 508, 526
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	2 cut(s)	406, 491
Hpy188I	TCNGA	3 cut(s)	137, 352, 388
Hpy188III	TCNNGA	4 cut(s)	43, 233, 430, 455
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4V	TGCA	6 cut(s)	36, 69, 77, 116, 526, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 305
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	5 cut(s)	95, 403, 451, 508, 526
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	181, 235, 517, 553
LmnI	GCTCC	2 cut(s)	29, 137
Lsp1109I	GCAGC	3 cut(s)	128, 181, 338
MalI	GATC	4 cut(s)	183, 237, 519, 555
MboI	GATC	4 cut(s)	181, 235, 517, 553
MboII	GAAGA	1 cut(s)	60
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	7 cut(s)	155, 204, 337, 355, 391, 442, 499
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	298
MseI	TTAA	3 cut(s)	177, 288, 395
MspR9I	CCNGG	2 cut(s)	61, 226
MvaI	CCWGG	2 cut(s)	61, 226
MwoI	GCNNNNNNNGC	2 cut(s)	11, 305
NdeII	GATC	4 cut(s)	181, 235, 517, 553
NlaIII	CATG	5 cut(s)	95, 403, 451, 508, 526
NlaIV	GGNNCC	2 cut(s)	31, 453
NspI	RCATGY	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	3 cut(s)	118, 196, 328
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PshBI	ATTAAT	2 cut(s)	177, 288
Psp124BI	GAGCTC	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	59, 224
PspGI	CCWGG	2 cut(s)	59, 224
PspN4I	GGNNCC	2 cut(s)	31, 453
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	383, 462
RsaNI	GTAC	2 cut(s)	382, 461
SacI	GAGCTC	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	177, 288, 395
SatI	GCNGC	3 cut(s)	117, 195, 327
Sau3AI	GATC	4 cut(s)	181, 235, 517, 553
ScaI	AGTACT	2 cut(s)	383, 462
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	61, 226
SduI	GDGCHC	1 cut(s)	512
SfcI	CTRYAG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	7 cut(s)	155, 204, 337, 355, 391, 442, 499
SstI	GAGCTC	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	59, 224
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	536
TaqI	TCGA	2 cut(s)	152, 552
TasI	AATT	7 cut(s)	155, 204, 337, 355, 391, 442, 499
TatI	WGTACW	2 cut(s)	381, 460
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	177, 288, 395
Tru9I	TTAA	3 cut(s)	177, 288, 395
TscAI	CASTG	2 cut(s)	349, 548
TseI	GCWGC	3 cut(s)	116, 194, 326
TspDTI	ATGAA	4 cut(s)	108, 228, 377, 436
TspRI	CASTG	2 cut(s)	349, 548
VspI	ATTAAT	2 cut(s)	177, 288
XapI	RAATTY	2 cut(s)	391, 442
XceI	RCATGY	1 cut(s)	526
ZrmI	AGTACT	2 cut(s)	383, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.